Wall clock time and date at job start Tue Mar 31 2020 20:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.47129 * 2 1 4 4 C 1.46898 * 111.00430 * 160.59151 * 3 2 1 5 5 C 1.50701 * 109.47287 * 288.23869 * 4 3 2 6 6 O 1.21291 * 119.99727 * 358.84328 * 5 4 3 7 7 N 1.34780 * 119.99933 * 178.84998 * 5 4 3 8 8 C 1.37095 * 119.99679 * 180.02562 * 7 5 4 9 9 H 1.07997 * 120.00292 * 359.97438 * 8 7 5 10 10 C 1.38953 * 119.99792 * 179.97438 * 8 7 5 11 11 N 1.31413 * 119.99922 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99950 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46956 * 90.00130 * 12 10 8 14 14 H 1.48499 * 109.47065 * 210.00017 * 12 10 8 15 15 H 1.48504 * 109.47200 * 330.00083 * 12 10 8 16 16 C 1.46899 * 111.00291 * 284.54861 * 3 2 1 17 17 H 1.09002 * 109.46760 * 49.05628 * 16 3 2 18 18 C 1.52997 * 109.46891 * 289.06053 * 16 3 2 19 19 C 1.52997 * 109.47741 * 169.05534 * 16 3 2 20 20 N 1.46501 * 109.46957 * 304.35469 * 19 16 3 21 21 C 1.34778 * 119.99620 * 184.76179 * 20 19 16 22 22 O 1.21679 * 120.00134 * 359.97438 * 21 20 19 23 23 C 1.46761 * 119.99761 * 180.02562 * 21 20 19 24 24 C 1.36662 * 126.84387 * 179.68630 * 23 21 20 25 25 N 1.33324 * 107.78557 * 179.89240 * 24 23 21 26 26 C 1.30860 * 109.68594 * 0.37466 * 25 24 23 27 27 C 1.50697 * 125.42093 * 179.78659 * 26 25 24 28 28 N 1.34493 * 109.15931 * 359.76646 * 26 25 24 29 29 H 0.96998 * 126.47071 * 180.02562 * 28 26 25 30 30 H 1.09003 * 109.46924 * 185.41592 * 1 2 3 31 31 H 1.08998 * 109.47031 * 305.41009 * 1 2 3 32 32 H 1.08990 * 109.47083 * 65.41626 * 1 2 3 33 33 H 1.08999 * 109.47549 * 239.99864 * 2 1 3 34 34 H 1.09005 * 109.47488 * 119.99624 * 2 1 3 35 35 H 1.09003 * 109.47035 * 48.23686 * 4 3 2 36 36 H 1.09002 * 109.47735 * 168.23404 * 4 3 2 37 37 H 0.96999 * 119.99871 * 359.97438 * 7 5 4 38 38 H 0.96994 * 119.99569 * 179.97438 * 11 10 8 39 39 H 1.09003 * 109.47324 * 179.97438 * 18 16 3 40 40 H 1.09002 * 109.47072 * 299.99384 * 18 16 3 41 41 H 1.09000 * 109.47339 * 59.99658 * 18 16 3 42 42 H 1.09007 * 109.46776 * 64.35448 * 19 16 3 43 43 H 1.08997 * 109.47436 * 184.34918 * 19 16 3 44 44 H 0.96994 * 119.99972 * 4.76004 * 20 19 16 45 45 H 1.07998 * 126.11114 * 359.97438 * 24 23 21 46 46 H 1.08995 * 109.47039 * 269.98251 * 27 26 25 47 47 H 1.09003 * 109.46596 * 29.97719 * 27 26 25 48 48 H 1.08994 * 109.47317 * 149.97737 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4146 1.4502 0.4557 5 6 3.4723 1.1805 1.9373 6 8 2.4496 0.9768 2.5568 7 7 4.6602 1.1659 2.5738 8 6 4.7126 0.9200 3.9215 9 1 3.8021 0.7385 4.4732 10 6 5.9373 0.9044 4.5777 11 7 7.0453 1.1248 3.9064 12 14 6.0088 0.5700 6.4142 13 1 6.1465 -0.8903 6.6465 14 1 7.1756 1.2768 7.0010 15 1 4.7611 1.0577 7.0551 16 6 1.8703 1.9962 -1.3274 17 1 0.8583 1.8253 -1.6943 18 6 2.8762 1.3680 -2.2941 19 6 2.1295 3.5008 -1.2283 20 7 1.2355 4.0853 -0.2256 21 6 1.2177 5.4193 -0.0346 22 8 1.9445 6.1382 -0.6946 23 6 0.3225 6.0048 0.9703 24 6 0.1954 7.3292 1.2822 25 7 -0.7233 7.4351 2.2426 26 6 -1.1733 6.2467 2.5551 27 6 -2.2180 5.9557 3.6014 28 7 -0.5553 5.3264 1.7935 29 1 -0.6991 4.3674 1.8174 30 1 -0.3633 -1.0231 0.0970 31 1 -0.3633 0.5954 0.8376 32 1 -0.3633 0.4275 -0.9344 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 4.0050 0.7019 -0.0731 36 1 3.8178 2.4420 0.2510 37 1 5.4780 1.3286 2.0783 38 1 7.9002 1.1142 4.3645 39 1 2.7651 1.8212 -3.2792 40 1 3.8882 1.5389 -1.9272 41 1 2.6915 0.2961 -2.3648 42 1 3.1654 3.6725 -0.9357 43 1 1.9435 3.9661 -2.1963 44 1 0.6564 3.5122 0.3007 45 1 0.7407 8.1447 0.8305 46 1 -1.7329 5.7929 4.5638 47 1 -2.9014 6.8015 3.6775 48 1 -2.7754 5.0624 3.3197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152392732.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:23 Heat of formation + Delta-G solvation = -13.338150 kcal Electronic energy + Delta-G solvation = -30054.389285 eV Core-core repulsion = 25952.338438 eV Total energy + Delta-G solvation = -4102.050847 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.27329 -39.75907 -38.79122 -37.35909 -34.63036 -33.88948 -32.83934 -32.13251 -31.62599 -31.27033 -30.08495 -27.90609 -26.55043 -26.22016 -24.29829 -23.00005 -22.35657 -20.94335 -20.43498 -20.15847 -18.96952 -18.47374 -17.83741 -16.77489 -16.28763 -16.00538 -15.79415 -15.35944 -14.96735 -14.75795 -14.51517 -14.30065 -14.04520 -13.96562 -13.84208 -13.66997 -13.40241 -13.10149 -12.92255 -12.81664 -12.65286 -12.55936 -12.23836 -12.09316 -11.91665 -11.59513 -11.41679 -11.32454 -11.12378 -10.78302 -10.51362 -10.50781 -10.42951 -10.25862 -10.25428 -10.00771 -9.51862 -9.12573 -8.55537 -8.50768 -8.03268 -7.97520 -6.44966 -3.86012 1.25342 2.72697 2.76939 3.12424 3.14437 3.23679 3.28719 3.37196 3.82384 3.88064 4.18163 4.22428 4.58675 4.72027 4.83559 4.96745 5.02375 5.11012 5.17117 5.20676 5.26447 5.27536 5.32896 5.40835 5.44252 5.55778 5.58387 5.65609 5.68844 5.74375 5.75664 5.77754 5.88178 6.00493 6.04669 6.19579 6.29450 6.35936 6.37673 6.48541 7.07933 7.14626 7.23045 7.47080 7.51284 7.83786 8.02076 8.15422 8.57592 9.14424 9.50908 10.01959 10.72720 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007853 B = 0.003768 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3564.497333 B = 7428.933278 C = 9199.268782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 N -0.509 5.509 4 C 0.041 3.959 5 C 0.444 3.556 6 O -0.579 6.579 7 N -0.564 5.564 8 C -0.299 4.299 9 H 0.102 0.898 10 C 0.023 3.977 11 N -0.900 5.900 12 Si 0.929 3.071 13 H -0.278 1.278 14 H -0.283 1.283 15 H -0.270 1.270 16 C 0.063 3.937 17 H 0.090 0.910 18 C -0.185 4.185 19 C 0.130 3.870 20 N -0.711 5.711 21 C 0.594 3.406 22 O -0.535 6.535 23 C -0.086 4.086 24 C 0.068 3.932 25 N -0.498 5.498 26 C 0.238 3.762 27 C -0.074 4.074 28 N -0.547 5.547 29 H 0.424 0.576 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.030 0.970 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.391 0.609 38 H 0.272 0.728 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.405 0.595 45 H 0.183 0.817 46 H 0.088 0.912 47 H 0.093 0.907 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.335 2.499 -10.068 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.075 4.075 3 N -0.233 5.233 4 C -0.091 4.091 5 C 0.229 3.771 6 O -0.464 6.464 7 N -0.200 5.200 8 C -0.429 4.429 9 H 0.120 0.880 10 C -0.179 4.179 11 N -0.542 5.542 12 Si 0.756 3.244 13 H -0.204 1.204 14 H -0.209 1.209 15 H -0.195 1.195 16 C -0.046 4.046 17 H 0.108 0.892 18 C -0.245 4.245 19 C 0.006 3.994 20 N -0.362 5.362 21 C 0.380 3.620 22 O -0.412 6.412 23 C -0.202 4.202 24 C -0.086 4.086 25 N -0.219 5.219 26 C -0.026 4.026 27 C -0.133 4.133 28 N -0.152 5.152 29 H 0.263 0.737 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.106 0.894 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.224 0.776 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.241 0.759 45 H 0.200 0.800 46 H 0.106 0.894 47 H 0.112 0.888 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.814 3.866 -9.388 17.959 hybrid contribution 1.313 -2.105 -0.073 2.482 sum -13.501 1.761 -9.461 16.580 Atomic orbital electron populations 1.21699 0.95367 1.01282 1.01375 1.22114 0.95810 0.88368 1.01240 1.61787 1.19791 1.19135 1.22581 1.21924 0.89266 1.01954 0.95907 1.19719 0.84581 0.84686 0.88124 1.90490 1.33732 1.54536 1.67607 1.41874 1.06849 1.62133 1.09191 1.19652 0.94473 1.45248 0.83507 0.88018 1.25255 0.94786 0.97353 1.00463 1.69608 0.98131 1.49468 1.36951 0.85881 0.77962 0.78382 0.82196 1.20424 1.20880 1.19467 1.22046 1.00195 0.93083 0.89287 0.89179 1.22402 1.00475 1.01582 1.00010 1.21450 0.94467 0.91742 0.91773 1.45684 1.43483 1.06371 1.40668 1.16840 0.81510 0.82118 0.81520 1.90834 1.41768 1.60739 1.47830 1.21151 1.02501 0.94108 1.02442 1.22622 0.96708 0.94049 0.95234 1.70189 1.13409 1.22491 1.15777 1.23448 0.98371 0.84324 0.96480 1.20312 0.94677 1.03493 0.94796 1.43269 1.31513 1.10846 1.29604 0.73683 0.92767 0.91689 0.93748 0.95188 0.89377 0.93073 0.89427 0.77578 0.91837 0.91782 0.91604 0.91764 0.91191 0.90711 0.75932 0.80007 0.89390 0.88783 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.94 37.16 0.37 -1.19 16 2 C 0.05 0.70 5.12 -3.83 -0.02 0.68 16 3 N -0.51 -6.92 3.41 -228.09 -0.78 -7.70 16 4 C 0.04 0.66 4.15 -4.98 -0.02 0.64 16 5 C 0.44 9.83 7.29 -10.98 -0.08 9.75 16 6 O -0.58 -14.36 14.67 5.55 0.08 -14.28 16 7 N -0.56 -13.88 5.29 -10.96 -0.06 -13.94 16 8 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 9 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 10 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 11 N -0.90 -24.35 13.05 55.50 0.72 -23.62 16 12 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 13 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 15 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 16 C 0.06 0.67 2.39 -67.72 -0.16 0.51 16 17 H 0.09 0.85 6.68 -51.93 -0.35 0.50 16 18 C -0.19 -1.75 8.50 37.16 0.32 -1.43 16 19 C 0.13 1.53 4.92 -4.04 -0.02 1.51 16 20 N -0.71 -8.99 5.41 -61.59 -0.33 -9.33 16 21 C 0.59 8.77 7.79 -12.82 -0.10 8.67 16 22 O -0.53 -9.40 16.90 5.21 0.09 -9.32 16 23 C -0.09 -1.18 7.08 -82.14 -0.58 -1.76 16 24 C 0.07 0.96 11.66 -17.47 -0.20 0.76 16 25 N -0.50 -6.98 11.20 -10.58 -0.12 -7.10 16 26 C 0.24 2.73 8.12 -155.61 -1.26 1.47 16 27 C -0.07 -0.54 10.51 36.00 0.38 -0.16 16 28 N -0.55 -6.15 6.07 -7.02 -0.04 -6.20 16 29 H 0.42 3.80 8.32 -40.82 -0.34 3.46 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.41 6.94 -51.93 -0.36 0.05 16 33 H 0.03 0.36 6.24 -51.93 -0.32 0.03 16 34 H 0.09 1.50 6.43 -51.93 -0.33 1.17 16 35 H 0.05 0.78 7.13 -51.93 -0.37 0.41 16 36 H 0.09 1.39 6.07 -51.93 -0.32 1.08 16 37 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.67 6.68 -51.93 -0.35 0.33 16 41 H 0.06 0.60 6.50 -51.93 -0.34 0.26 16 42 H 0.07 0.94 6.50 -51.92 -0.34 0.60 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.41 4.79 7.33 -40.82 -0.30 4.49 16 45 H 0.18 2.33 8.06 -52.49 -0.42 1.91 16 46 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 392.74 15.07 5.92 5.92 Total: -1.00 -33.41 392.74 -8.10 -41.51 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -6.93 Total: 16.56 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: -1.63 Total: 11.66 kcal Atomic # 7 Polarization: -67.28 SS G_CDS: -0.61 Total: -67.88 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: 0.17 Total: -23.60 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.41 -8.10 -41.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152392732.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.167 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds