Wall clock time and date at job start Tue Mar 31 2020 20:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.47129 * 2 1 4 4 C 1.46898 * 111.00430 * 160.59151 * 3 2 1 5 5 C 1.50701 * 109.47287 * 288.23869 * 4 3 2 6 6 O 1.21291 * 119.99727 * 358.84328 * 5 4 3 7 7 N 1.34780 * 119.99933 * 178.84998 * 5 4 3 8 8 C 1.37095 * 119.99679 * 180.02562 * 7 5 4 9 9 H 1.07997 * 120.00292 * 359.97438 * 8 7 5 10 10 C 1.38953 * 119.99792 * 179.97438 * 8 7 5 11 11 N 1.31413 * 119.99922 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99950 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46956 * 90.00130 * 12 10 8 14 14 H 1.48499 * 109.47065 * 210.00017 * 12 10 8 15 15 H 1.48504 * 109.47200 * 330.00083 * 12 10 8 16 16 C 1.46899 * 111.00291 * 284.54861 * 3 2 1 17 17 H 1.09002 * 109.46760 * 49.05628 * 16 3 2 18 18 C 1.52997 * 109.46891 * 289.06053 * 16 3 2 19 19 C 1.52997 * 109.47741 * 169.05534 * 16 3 2 20 20 N 1.46501 * 109.46957 * 304.35469 * 19 16 3 21 21 C 1.34778 * 119.99620 * 184.76179 * 20 19 16 22 22 O 1.21679 * 120.00134 * 359.97438 * 21 20 19 23 23 C 1.46761 * 119.99761 * 180.02562 * 21 20 19 24 24 C 1.36662 * 126.84387 * 179.68630 * 23 21 20 25 25 N 1.33324 * 107.78557 * 179.89240 * 24 23 21 26 26 C 1.30860 * 109.68594 * 0.37466 * 25 24 23 27 27 C 1.50697 * 125.42093 * 179.78659 * 26 25 24 28 28 N 1.34493 * 109.15931 * 359.76646 * 26 25 24 29 29 H 0.96998 * 126.47071 * 180.02562 * 28 26 25 30 30 H 1.09003 * 109.46924 * 185.41592 * 1 2 3 31 31 H 1.08998 * 109.47031 * 305.41009 * 1 2 3 32 32 H 1.08990 * 109.47083 * 65.41626 * 1 2 3 33 33 H 1.08999 * 109.47549 * 239.99864 * 2 1 3 34 34 H 1.09005 * 109.47488 * 119.99624 * 2 1 3 35 35 H 1.09003 * 109.47035 * 48.23686 * 4 3 2 36 36 H 1.09002 * 109.47735 * 168.23404 * 4 3 2 37 37 H 0.96999 * 119.99871 * 359.97438 * 7 5 4 38 38 H 0.96994 * 119.99569 * 179.97438 * 11 10 8 39 39 H 1.09003 * 109.47324 * 179.97438 * 18 16 3 40 40 H 1.09002 * 109.47072 * 299.99384 * 18 16 3 41 41 H 1.09000 * 109.47339 * 59.99658 * 18 16 3 42 42 H 1.09007 * 109.46776 * 64.35448 * 19 16 3 43 43 H 1.08997 * 109.47436 * 184.34918 * 19 16 3 44 44 H 0.96994 * 119.99972 * 4.76004 * 20 19 16 45 45 H 1.07998 * 126.11114 * 359.97438 * 24 23 21 46 46 H 1.08995 * 109.47039 * 269.98251 * 27 26 25 47 47 H 1.09003 * 109.46596 * 29.97719 * 27 26 25 48 48 H 1.08994 * 109.47317 * 149.97737 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4146 1.4502 0.4557 5 6 3.4723 1.1805 1.9373 6 8 2.4496 0.9768 2.5568 7 7 4.6602 1.1659 2.5738 8 6 4.7126 0.9200 3.9215 9 1 3.8021 0.7385 4.4732 10 6 5.9373 0.9044 4.5777 11 7 7.0453 1.1248 3.9064 12 14 6.0088 0.5700 6.4142 13 1 6.1465 -0.8903 6.6465 14 1 7.1756 1.2768 7.0010 15 1 4.7611 1.0577 7.0551 16 6 1.8703 1.9962 -1.3274 17 1 0.8583 1.8253 -1.6943 18 6 2.8762 1.3680 -2.2941 19 6 2.1295 3.5008 -1.2283 20 7 1.2355 4.0853 -0.2256 21 6 1.2177 5.4193 -0.0346 22 8 1.9445 6.1382 -0.6946 23 6 0.3225 6.0048 0.9703 24 6 0.1954 7.3292 1.2822 25 7 -0.7233 7.4351 2.2426 26 6 -1.1733 6.2467 2.5551 27 6 -2.2180 5.9557 3.6014 28 7 -0.5553 5.3264 1.7935 29 1 -0.6991 4.3674 1.8174 30 1 -0.3633 -1.0231 0.0970 31 1 -0.3633 0.5954 0.8376 32 1 -0.3633 0.4275 -0.9344 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 4.0050 0.7019 -0.0731 36 1 3.8178 2.4420 0.2510 37 1 5.4780 1.3286 2.0783 38 1 7.9002 1.1142 4.3645 39 1 2.7651 1.8212 -3.2792 40 1 3.8882 1.5389 -1.9272 41 1 2.6915 0.2961 -2.3648 42 1 3.1654 3.6725 -0.9357 43 1 1.9435 3.9661 -2.1963 44 1 0.6564 3.5122 0.3007 45 1 0.7407 8.1447 0.8305 46 1 -1.7329 5.7929 4.5638 47 1 -2.9014 6.8015 3.6775 48 1 -2.7754 5.0624 3.3197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152392732.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:21 Heat of formation + Delta-G solvation = -38.988404 kcal Electronic energy + Delta-G solvation = -30055.501563 eV Core-core repulsion = 25952.338438 eV Total energy + Delta-G solvation = -4103.163126 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.25350 -40.95047 -40.16701 -38.84134 -36.00044 -35.58821 -33.83142 -33.28512 -33.01032 -32.47325 -31.30110 -28.78103 -27.96461 -27.16198 -26.02503 -24.00137 -23.36776 -21.91339 -21.71869 -21.33227 -20.38904 -19.81842 -19.39763 -18.17902 -17.33255 -17.07352 -16.95971 -16.71404 -16.35831 -16.18871 -15.76806 -15.70755 -15.49402 -15.06124 -15.01819 -14.85972 -14.28075 -14.25985 -14.00139 -13.77456 -13.64466 -13.48043 -13.42581 -13.23179 -13.06034 -12.93900 -12.86061 -12.42816 -12.38407 -12.34472 -12.14493 -11.89209 -11.61338 -11.54265 -11.38301 -11.25065 -11.11262 -10.28439 -10.20605 -9.98746 -9.51946 -9.20241 -8.46242 -5.94366 0.21658 1.36300 1.39853 1.51990 1.72780 1.82631 2.08221 2.11164 2.26779 2.27581 2.73495 3.21147 3.37886 3.40548 3.71886 3.80699 3.97267 4.09353 4.15403 4.24284 4.28474 4.30435 4.41794 4.51422 4.56287 4.58143 4.62137 4.69522 4.73525 4.78051 4.83700 4.84739 4.86463 5.09274 5.14012 5.21261 5.24595 5.35324 5.40565 5.44698 5.46940 5.89927 6.09152 6.20454 6.22677 6.42138 6.61029 6.85298 7.05202 7.13969 7.58729 8.13634 8.71379 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007853 B = 0.003768 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3564.497333 B = 7428.933278 C = 9199.268782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.053 3.947 3 N -0.517 5.517 4 C 0.056 3.944 5 C 0.445 3.555 6 O -0.606 6.606 7 N -0.580 5.580 8 C -0.327 4.327 9 H 0.080 0.920 10 C -0.015 4.015 11 N -0.923 5.923 12 Si 0.989 3.011 13 H -0.270 1.270 14 H -0.275 1.275 15 H -0.272 1.272 16 C 0.072 3.928 17 H 0.113 0.887 18 C -0.183 4.183 19 C 0.128 3.872 20 N -0.702 5.702 21 C 0.592 3.408 22 O -0.570 6.570 23 C -0.102 4.102 24 C 0.054 3.946 25 N -0.527 5.527 26 C 0.244 3.756 27 C -0.074 4.074 28 N -0.539 5.539 29 H 0.435 0.565 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.392 0.608 38 H 0.276 0.724 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.088 0.912 44 H 0.410 0.590 45 H 0.184 0.816 46 H 0.094 0.906 47 H 0.103 0.897 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.698 1.627 -10.770 19.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.074 4.074 3 N -0.241 5.241 4 C -0.075 4.075 5 C 0.232 3.768 6 O -0.491 6.491 7 N -0.217 5.217 8 C -0.457 4.457 9 H 0.098 0.902 10 C -0.214 4.214 11 N -0.565 5.565 12 Si 0.813 3.187 13 H -0.195 1.195 14 H -0.199 1.199 15 H -0.197 1.197 16 C -0.036 4.036 17 H 0.131 0.869 18 C -0.242 4.242 19 C 0.004 3.996 20 N -0.352 5.352 21 C 0.379 3.621 22 O -0.450 6.450 23 C -0.218 4.218 24 C -0.100 4.100 25 N -0.248 5.248 26 C -0.020 4.020 27 C -0.132 4.132 28 N -0.145 5.145 29 H 0.276 0.724 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.225 0.775 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.106 0.894 44 H 0.246 0.754 45 H 0.201 0.799 46 H 0.113 0.887 47 H 0.122 0.878 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.197 2.951 -10.111 19.320 hybrid contribution 1.637 -1.838 0.115 2.464 sum -14.560 1.113 -9.996 17.696 Atomic orbital electron populations 1.21645 0.93428 1.01868 1.02089 1.22078 0.97360 0.87872 1.00112 1.61739 1.17803 1.19710 1.24876 1.21704 0.91596 1.02631 0.91588 1.20751 0.83342 0.82286 0.90444 1.90462 1.34538 1.55028 1.69114 1.41974 1.07734 1.63378 1.08652 1.19620 0.94156 1.46925 0.84965 0.90160 1.26006 0.94178 0.96804 1.04431 1.69678 0.98484 1.49901 1.38415 0.84975 0.77883 0.78573 0.77220 1.19533 1.19949 1.19707 1.22088 1.01928 0.91740 0.87849 0.86873 1.22377 0.99301 1.01919 1.00561 1.21559 0.93367 0.92692 0.92006 1.45660 1.43210 1.05743 1.40554 1.16982 0.81231 0.82530 0.81343 1.90806 1.43310 1.61579 1.49286 1.21028 1.03388 0.94258 1.03154 1.22811 0.97045 0.94570 0.95592 1.70199 1.14151 1.24027 1.16413 1.24269 0.97937 0.83663 0.96119 1.20538 0.93864 1.05162 0.93630 1.43225 1.30855 1.11404 1.29016 0.72411 0.91907 0.93149 0.91184 0.93157 0.93586 0.91470 0.88798 0.77456 0.91490 0.89727 0.92584 0.91183 0.92884 0.89386 0.75358 0.79868 0.88733 0.87793 0.87695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.94 71.98 0.72 -1.92 16 2 C 0.05 1.34 5.12 86.30 0.44 1.78 16 3 N -0.52 -13.24 3.41 -875.53 -2.99 -16.23 16 4 C 0.06 1.79 4.15 85.56 0.36 2.15 16 5 C 0.44 19.98 7.29 87.66 0.64 20.62 16 6 O -0.61 -30.63 14.67 -3.06 -0.04 -30.68 16 7 N -0.58 -29.23 5.29 -306.98 -1.62 -30.85 16 8 C -0.33 -18.27 9.68 84.04 0.81 -17.46 16 9 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 10 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 11 N -0.92 -50.24 13.05 21.66 0.28 -49.95 16 12 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 13 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 14 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 16 C 0.07 1.33 2.39 44.91 0.11 1.44 16 17 H 0.11 1.66 6.68 -2.39 -0.02 1.64 16 18 C -0.18 -2.87 8.50 71.98 0.61 -2.26 16 19 C 0.13 2.80 4.92 86.38 0.43 3.23 16 20 N -0.70 -17.04 5.41 -467.00 -2.53 -19.57 16 21 C 0.59 17.47 7.79 86.47 0.67 18.15 16 22 O -0.57 -20.34 16.90 -4.28 -0.07 -20.41 16 23 C -0.10 -2.80 7.08 40.01 0.28 -2.52 16 24 C 0.05 1.55 11.66 84.10 0.98 2.53 16 25 N -0.53 -14.66 11.20 -187.40 -2.10 -16.76 16 26 C 0.24 5.35 8.12 138.20 1.12 6.47 16 27 C -0.07 -0.91 10.51 71.23 0.75 -0.16 16 28 N -0.54 -11.64 6.07 -176.12 -1.07 -12.71 16 29 H 0.43 7.20 8.32 -92.71 -0.77 6.42 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.04 6.94 -2.39 -0.02 1.02 16 33 H 0.05 1.06 6.24 -2.39 -0.01 1.04 16 34 H 0.05 1.56 6.43 -2.38 -0.02 1.54 16 35 H 0.07 1.96 7.13 -2.39 -0.02 1.94 16 36 H 0.09 2.93 6.07 -2.39 -0.01 2.92 16 37 H 0.39 19.24 7.90 -92.71 -0.73 18.50 16 38 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 1.01 6.68 -2.39 -0.02 0.99 16 41 H 0.07 1.05 6.50 -2.39 -0.02 1.04 16 42 H 0.05 1.37 6.50 -2.38 -0.02 1.36 16 43 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.41 9.13 7.33 -92.71 -0.68 8.45 16 45 H 0.18 4.95 8.06 -2.91 -0.02 4.92 16 46 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -74.23 392.74 -0.89 -75.11 By element: Atomic # 1 Polarization: 46.56 SS G_CDS: -1.15 Total: 45.40 kcal Atomic # 6 Polarization: 23.33 SS G_CDS: 8.38 Total: 31.72 kcal Atomic # 7 Polarization: -136.04 SS G_CDS: -10.03 Total: -146.06 kcal Atomic # 8 Polarization: -50.97 SS G_CDS: -0.12 Total: -51.09 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -74.23 -0.89 -75.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152392732.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.124 kcal (2) G-P(sol) polarization free energy of solvation -74.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds