Wall clock time and date at job start Tue Mar 31 2020 20:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46896 * 109.47267 * 2 1 4 4 C 1.46902 * 111.00216 * 160.59295 * 3 2 1 5 5 C 1.50696 * 109.47303 * 288.23862 * 4 3 2 6 6 O 1.21288 * 120.00196 * 358.84658 * 5 4 3 7 7 N 1.34782 * 120.00011 * 178.84116 * 5 4 3 8 8 C 1.37098 * 119.99945 * 179.97438 * 7 5 4 9 9 H 1.08007 * 119.99765 * 0.02562 * 8 7 5 10 10 C 1.38943 * 120.00138 * 180.02562 * 8 7 5 11 11 N 1.31414 * 120.00186 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00135 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47143 * 90.00168 * 12 10 8 14 14 H 1.48500 * 109.47272 * 210.00003 * 12 10 8 15 15 H 1.48492 * 109.47209 * 330.00226 * 12 10 8 16 16 C 1.46904 * 111.00434 * 284.54946 * 3 2 1 17 17 H 1.09001 * 109.46493 * 49.05966 * 16 3 2 18 18 C 1.53003 * 109.47106 * 289.05938 * 16 3 2 19 19 C 1.53000 * 109.46931 * 169.05883 * 16 3 2 20 20 N 1.46493 * 109.47387 * 304.34957 * 19 16 3 21 21 C 1.34776 * 120.00395 * 184.76918 * 20 19 16 22 22 O 1.21626 * 119.99507 * 359.97438 * 21 20 19 23 23 C 1.47320 * 120.00307 * 180.02562 * 21 20 19 24 24 C 1.36426 * 126.23798 * 179.97438 * 23 21 20 25 25 N 1.35373 * 106.87343 * 179.97438 * 24 23 21 26 26 C 1.46496 * 126.13648 * 180.02562 * 25 24 23 27 27 C 1.35859 * 107.72983 * 359.97438 * 25 24 23 28 28 N 1.30166 * 108.99876 * 359.76121 * 27 25 24 29 29 H 1.09002 * 109.47316 * 185.41177 * 1 2 3 30 30 H 1.09003 * 109.47114 * 305.40874 * 1 2 3 31 31 H 1.09004 * 109.47228 * 65.40992 * 1 2 3 32 32 H 1.09003 * 109.46965 * 240.00628 * 2 1 3 33 33 H 1.08998 * 109.47682 * 120.00679 * 2 1 3 34 34 H 1.09007 * 109.46688 * 48.23802 * 4 3 2 35 35 H 1.08994 * 109.47408 * 168.23296 * 4 3 2 36 36 H 0.96996 * 119.99775 * 0.02562 * 7 5 4 37 37 H 0.97000 * 120.00262 * 179.97438 * 11 10 8 38 38 H 1.08993 * 109.47154 * 179.97438 * 18 16 3 39 39 H 1.09001 * 109.46782 * 299.99731 * 18 16 3 40 40 H 1.09001 * 109.47069 * 59.99550 * 18 16 3 41 41 H 1.09001 * 109.47428 * 64.35548 * 19 16 3 42 42 H 1.09000 * 109.46390 * 184.35345 * 19 16 3 43 43 H 0.97007 * 120.00106 * 4.76563 * 20 19 16 44 44 H 1.07999 * 126.56008 * 359.93840 * 24 23 21 45 45 H 1.09000 * 109.47249 * 90.00016 * 26 25 24 46 46 H 1.09007 * 109.47197 * 210.00185 * 26 25 24 47 47 H 1.08994 * 109.46965 * 329.99809 * 26 25 24 48 48 H 1.07995 * 125.49718 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4146 1.4501 0.4557 5 6 3.4723 1.1804 1.9372 6 8 2.4497 0.9766 2.5568 7 7 4.6602 1.1655 2.5737 8 6 4.7126 0.9206 3.9216 9 1 3.8020 0.7392 4.4733 10 6 5.9372 0.9057 4.5780 11 7 7.0452 1.1269 3.9068 12 14 6.0087 0.5714 6.4144 13 1 6.1473 -0.8888 6.6467 14 1 7.1749 1.2789 7.0014 15 1 4.7607 1.0582 7.0551 16 6 1.8703 1.9962 -1.3274 17 1 0.8582 1.8254 -1.6943 18 6 2.8761 1.3680 -2.2942 19 6 2.1296 3.5008 -1.2281 20 7 1.2357 4.0853 -0.2254 21 6 1.2179 5.4193 -0.0343 22 8 1.9444 6.1379 -0.6939 23 6 0.3193 6.0070 0.9744 24 6 0.1986 7.3329 1.2722 25 7 -0.7322 7.4328 2.2500 26 6 -1.1893 8.6718 2.8843 27 6 -1.1673 6.1782 2.5369 28 7 -0.5442 5.3285 1.7726 29 1 -0.3634 -1.0231 0.0969 30 1 -0.3633 0.5954 0.8376 31 1 -0.3634 0.4276 -0.9345 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 4.0049 0.7017 -0.0732 35 1 3.8178 2.4418 0.2510 36 1 5.4780 1.3287 2.0783 37 1 7.9001 1.1169 4.3651 38 1 2.7651 1.8213 -3.2792 39 1 3.8882 1.5389 -1.9273 40 1 2.6914 0.2961 -2.3649 41 1 3.1655 3.6725 -0.9355 42 1 1.9436 3.9661 -2.1961 43 1 0.6565 3.5122 0.3009 44 1 0.7420 8.1469 0.8155 45 1 -2.0394 9.0710 2.3310 46 1 -1.4893 8.4648 3.9116 47 1 -0.3794 9.4012 2.8822 48 1 -1.9125 5.9268 3.2770 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152743313.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:10 Heat of formation + Delta-G solvation = -0.261516 kcal Electronic energy + Delta-G solvation = -29875.762449 eV Core-core repulsion = 25774.278647 eV Total energy + Delta-G solvation = -4101.483802 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.19211 -39.51968 -38.56551 -37.17243 -34.38221 -34.13639 -33.68833 -31.61794 -31.13702 -29.96788 -29.78192 -27.73603 -26.37609 -26.09695 -24.15256 -23.03676 -22.15492 -21.23148 -20.09568 -19.76694 -18.68483 -17.91139 -17.66302 -16.57998 -16.12151 -16.00701 -15.90598 -15.22389 -14.81674 -14.62807 -14.39886 -14.29090 -14.04791 -13.86869 -13.81516 -13.55649 -13.33016 -13.12212 -13.07247 -12.83911 -12.58297 -12.38494 -12.06781 -11.88279 -11.70235 -11.45956 -11.21504 -11.13806 -10.99986 -10.58387 -10.33954 -10.30715 -10.28906 -10.13219 -9.86994 -9.82693 -9.38940 -8.83770 -8.53868 -8.33665 -7.86716 -7.77452 -6.33045 -3.73193 1.60602 2.44883 2.49051 3.22681 3.30464 3.36689 3.51266 3.76599 4.01310 4.06167 4.29992 4.37971 4.45172 4.66581 4.72899 4.82464 4.99509 5.04222 5.18204 5.21245 5.29298 5.35455 5.44154 5.46774 5.53387 5.61142 5.74619 5.79416 5.89111 5.91754 5.94948 5.97355 6.07066 6.19943 6.25017 6.37642 6.39205 6.49365 6.64324 6.76455 6.89826 7.37649 7.46386 7.63129 7.68279 8.03263 8.15874 8.56223 8.72271 9.27769 9.65357 10.18074 10.85096 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007835 B = 0.003674 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3573.062859 B = 7619.580202 C = 9709.632010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.054 3.946 3 N -0.506 5.506 4 C 0.042 3.958 5 C 0.447 3.553 6 O -0.572 6.572 7 N -0.569 5.569 8 C -0.294 4.294 9 H 0.102 0.898 10 C 0.021 3.979 11 N -0.904 5.904 12 Si 0.928 3.072 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.270 1.270 16 C 0.065 3.935 17 H 0.090 0.910 18 C -0.185 4.185 19 C 0.129 3.871 20 N -0.697 5.697 21 C 0.601 3.399 22 O -0.559 6.559 23 C -0.056 4.056 24 C 0.027 3.973 25 N -0.464 5.464 26 C 0.071 3.929 27 C 0.183 3.817 28 N -0.453 5.453 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.028 0.972 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.391 0.609 37 H 0.270 0.730 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.420 0.580 44 H 0.186 0.814 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.847 10.421 -8.841 20.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.073 4.073 3 N -0.230 5.230 4 C -0.090 4.090 5 C 0.232 3.768 6 O -0.455 6.455 7 N -0.206 5.206 8 C -0.424 4.424 9 H 0.120 0.880 10 C -0.180 4.180 11 N -0.546 5.546 12 Si 0.755 3.245 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.195 1.195 16 C -0.045 4.045 17 H 0.108 0.892 18 C -0.245 4.245 19 C 0.005 3.995 20 N -0.347 5.347 21 C 0.387 3.613 22 O -0.439 6.439 23 C -0.186 4.186 24 C -0.112 4.112 25 N -0.146 5.146 26 C -0.071 4.071 27 C -0.101 4.101 28 N -0.172 5.172 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.223 0.777 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.258 0.742 44 H 0.203 0.797 45 H 0.097 0.903 46 H 0.110 0.890 47 H 0.106 0.894 48 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -15.275 10.276 -8.429 20.247 hybrid contribution 1.064 0.137 0.464 1.169 sum -14.210 10.413 -7.965 19.334 Atomic orbital electron populations 1.21702 0.95275 1.01064 1.01735 1.22094 0.95952 0.88359 1.00934 1.61756 1.19536 1.19029 1.22631 1.21911 0.89402 1.01826 0.95812 1.19766 0.84535 0.84266 0.88209 1.90518 1.33672 1.53778 1.67539 1.41865 1.06832 1.62822 1.09118 1.19673 0.94440 1.44701 0.83601 0.88029 1.25224 0.94818 0.97694 1.00311 1.69616 0.98029 1.50155 1.36788 0.85891 0.77822 0.78312 0.82454 1.20515 1.21026 1.19499 1.22034 1.00092 0.93211 0.89137 0.89161 1.22410 1.00519 1.01524 1.00000 1.21407 0.94490 0.91727 0.91902 1.45608 1.42687 1.06629 1.39814 1.16890 0.81032 0.82267 0.81108 1.90761 1.42909 1.61236 1.48949 1.20591 1.03681 0.90827 1.03470 1.22554 0.95450 0.99214 0.93942 1.45354 1.31020 1.09010 1.29230 1.22115 1.01557 0.84405 0.99028 1.25231 1.03137 0.78620 1.03064 1.70675 1.07923 1.31934 1.06625 0.93005 0.91247 0.93787 0.95435 0.89532 0.93249 0.89458 0.77653 0.92025 0.91913 0.91710 0.91862 0.91539 0.91097 0.74211 0.79658 0.90255 0.89040 0.89372 0.77254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.94 37.15 0.37 -1.55 16 2 C 0.05 0.84 5.12 -3.83 -0.02 0.82 16 3 N -0.51 -8.15 3.41 -228.09 -0.78 -8.93 16 4 C 0.04 0.76 4.15 -4.98 -0.02 0.74 16 5 C 0.45 10.75 7.29 -10.98 -0.08 10.67 16 6 O -0.57 -15.50 14.67 5.55 0.08 -15.42 16 7 N -0.57 -14.83 5.29 -10.96 -0.06 -14.88 16 8 C -0.29 -8.40 9.68 -14.94 -0.14 -8.55 16 9 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 10 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 11 N -0.90 -25.27 13.05 55.50 0.72 -24.54 16 12 Si 0.93 21.59 29.55 -169.99 -5.02 16.57 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 16 C 0.06 0.83 2.39 -67.71 -0.16 0.67 16 17 H 0.09 1.07 6.68 -51.93 -0.35 0.73 16 18 C -0.19 -2.04 8.50 37.16 0.32 -1.73 16 19 C 0.13 1.82 4.92 -4.05 -0.02 1.80 16 20 N -0.70 -11.15 5.41 -61.42 -0.33 -11.49 16 21 C 0.60 10.32 7.81 -12.57 -0.10 10.22 16 22 O -0.56 -10.62 16.88 5.25 0.09 -10.53 16 23 C -0.06 -0.88 6.98 -83.09 -0.58 -1.46 16 24 C 0.03 0.33 11.26 -16.64 -0.19 0.14 16 25 N -0.46 -4.35 3.13 -125.78 -0.39 -4.74 16 26 C 0.07 0.30 11.15 59.84 0.67 0.97 16 27 C 0.18 2.01 12.55 -89.90 -1.13 0.89 16 28 N -0.45 -6.89 11.01 -11.03 -0.12 -7.01 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.04 0.52 6.94 -51.93 -0.36 0.16 16 32 H 0.03 0.38 6.24 -51.93 -0.32 0.05 16 33 H 0.09 1.65 6.43 -51.93 -0.33 1.31 16 34 H 0.05 0.83 7.13 -51.93 -0.37 0.46 16 35 H 0.09 1.55 6.07 -51.93 -0.32 1.24 16 36 H 0.39 9.84 7.90 -40.82 -0.32 9.52 16 37 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.75 6.68 -51.93 -0.35 0.41 16 40 H 0.06 0.68 6.50 -51.93 -0.34 0.35 16 41 H 0.07 1.02 6.50 -51.93 -0.34 0.68 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.42 7.05 7.80 -40.82 -0.32 6.73 16 44 H 0.19 1.87 8.06 -52.49 -0.42 1.45 16 45 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 47 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.21 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 394.39 15.07 5.94 5.94 Total: -1.00 -36.20 394.39 -8.08 -44.28 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -7.03 Total: 16.64 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: -1.18 Total: 14.11 kcal Atomic # 7 Polarization: -70.63 SS G_CDS: -0.96 Total: -71.59 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: 0.17 Total: -25.94 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.20 -8.08 -44.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152743313.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.018 kcal (2) G-P(sol) polarization free energy of solvation -36.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds