Wall clock time and date at job start Tue Mar 31 2020 20:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46896 * 109.47267 * 2 1 4 4 C 1.46902 * 111.00216 * 160.59295 * 3 2 1 5 5 C 1.50696 * 109.47303 * 288.23862 * 4 3 2 6 6 O 1.21288 * 120.00196 * 358.84658 * 5 4 3 7 7 N 1.34782 * 120.00011 * 178.84116 * 5 4 3 8 8 C 1.37098 * 119.99945 * 179.97438 * 7 5 4 9 9 H 1.08007 * 119.99765 * 0.02562 * 8 7 5 10 10 C 1.38943 * 120.00138 * 180.02562 * 8 7 5 11 11 N 1.31414 * 120.00186 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00135 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47143 * 90.00168 * 12 10 8 14 14 H 1.48500 * 109.47272 * 210.00003 * 12 10 8 15 15 H 1.48492 * 109.47209 * 330.00226 * 12 10 8 16 16 C 1.46904 * 111.00434 * 284.54946 * 3 2 1 17 17 H 1.09001 * 109.46493 * 49.05966 * 16 3 2 18 18 C 1.53003 * 109.47106 * 289.05938 * 16 3 2 19 19 C 1.53000 * 109.46931 * 169.05883 * 16 3 2 20 20 N 1.46493 * 109.47387 * 304.34957 * 19 16 3 21 21 C 1.34776 * 120.00395 * 184.76918 * 20 19 16 22 22 O 1.21626 * 119.99507 * 359.97438 * 21 20 19 23 23 C 1.47320 * 120.00307 * 180.02562 * 21 20 19 24 24 C 1.36426 * 126.23798 * 179.97438 * 23 21 20 25 25 N 1.35373 * 106.87343 * 179.97438 * 24 23 21 26 26 C 1.46496 * 126.13648 * 180.02562 * 25 24 23 27 27 C 1.35859 * 107.72983 * 359.97438 * 25 24 23 28 28 N 1.30166 * 108.99876 * 359.76121 * 27 25 24 29 29 H 1.09002 * 109.47316 * 185.41177 * 1 2 3 30 30 H 1.09003 * 109.47114 * 305.40874 * 1 2 3 31 31 H 1.09004 * 109.47228 * 65.40992 * 1 2 3 32 32 H 1.09003 * 109.46965 * 240.00628 * 2 1 3 33 33 H 1.08998 * 109.47682 * 120.00679 * 2 1 3 34 34 H 1.09007 * 109.46688 * 48.23802 * 4 3 2 35 35 H 1.08994 * 109.47408 * 168.23296 * 4 3 2 36 36 H 0.96996 * 119.99775 * 0.02562 * 7 5 4 37 37 H 0.97000 * 120.00262 * 179.97438 * 11 10 8 38 38 H 1.08993 * 109.47154 * 179.97438 * 18 16 3 39 39 H 1.09001 * 109.46782 * 299.99731 * 18 16 3 40 40 H 1.09001 * 109.47069 * 59.99550 * 18 16 3 41 41 H 1.09001 * 109.47428 * 64.35548 * 19 16 3 42 42 H 1.09000 * 109.46390 * 184.35345 * 19 16 3 43 43 H 0.97007 * 120.00106 * 4.76563 * 20 19 16 44 44 H 1.07999 * 126.56008 * 359.93840 * 24 23 21 45 45 H 1.09000 * 109.47249 * 90.00016 * 26 25 24 46 46 H 1.09007 * 109.47197 * 210.00185 * 26 25 24 47 47 H 1.08994 * 109.46965 * 329.99809 * 26 25 24 48 48 H 1.07995 * 125.49718 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4146 1.4501 0.4557 5 6 3.4723 1.1804 1.9372 6 8 2.4497 0.9766 2.5568 7 7 4.6602 1.1655 2.5737 8 6 4.7126 0.9206 3.9216 9 1 3.8020 0.7392 4.4733 10 6 5.9372 0.9057 4.5780 11 7 7.0452 1.1269 3.9068 12 14 6.0087 0.5714 6.4144 13 1 6.1473 -0.8888 6.6467 14 1 7.1749 1.2789 7.0014 15 1 4.7607 1.0582 7.0551 16 6 1.8703 1.9962 -1.3274 17 1 0.8582 1.8254 -1.6943 18 6 2.8761 1.3680 -2.2942 19 6 2.1296 3.5008 -1.2281 20 7 1.2357 4.0853 -0.2254 21 6 1.2179 5.4193 -0.0343 22 8 1.9444 6.1379 -0.6939 23 6 0.3193 6.0070 0.9744 24 6 0.1986 7.3329 1.2722 25 7 -0.7322 7.4328 2.2500 26 6 -1.1893 8.6718 2.8843 27 6 -1.1673 6.1782 2.5369 28 7 -0.5442 5.3285 1.7726 29 1 -0.3634 -1.0231 0.0969 30 1 -0.3633 0.5954 0.8376 31 1 -0.3634 0.4276 -0.9345 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 4.0049 0.7017 -0.0732 35 1 3.8178 2.4418 0.2510 36 1 5.4780 1.3287 2.0783 37 1 7.9001 1.1169 4.3651 38 1 2.7651 1.8213 -3.2792 39 1 3.8882 1.5389 -1.9273 40 1 2.6914 0.2961 -2.3649 41 1 3.1655 3.6725 -0.9355 42 1 1.9436 3.9661 -2.1961 43 1 0.6565 3.5122 0.3009 44 1 0.7420 8.1469 0.8155 45 1 -2.0394 9.0710 2.3310 46 1 -1.4893 8.4648 3.9116 47 1 -0.3794 9.4012 2.8822 48 1 -1.9125 5.9268 3.2770 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152743313.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:09 Heat of formation + Delta-G solvation = -27.275053 kcal Electronic energy + Delta-G solvation = -29876.933844 eV Core-core repulsion = 25774.278647 eV Total energy + Delta-G solvation = -4102.655197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.07900 -40.87771 -40.06176 -38.78904 -35.94517 -35.43837 -34.95156 -33.26600 -32.69948 -31.30651 -30.78600 -28.44739 -27.94116 -27.05152 -26.00004 -24.10002 -23.30672 -22.06335 -21.65371 -20.95146 -20.29924 -19.67203 -18.79960 -18.14100 -17.16205 -17.11070 -16.90525 -16.74394 -16.36482 -16.11717 -15.77174 -15.64045 -15.48278 -15.09835 -14.98096 -14.77240 -14.52553 -14.19621 -13.98637 -13.77997 -13.62792 -13.49710 -13.44033 -13.42614 -13.01989 -12.90394 -12.82784 -12.41049 -12.35561 -12.31623 -12.12557 -11.85531 -11.51586 -11.36794 -11.36171 -11.01719 -10.69243 -10.24876 -10.03915 -9.96544 -9.54935 -9.11569 -8.44075 -5.92345 0.60213 1.37586 1.39837 1.48454 1.53219 1.78539 2.10977 2.28231 2.39425 2.60205 2.80172 3.22680 3.41588 3.51938 3.77858 3.89822 4.00954 4.03493 4.19236 4.24373 4.26374 4.32949 4.44080 4.47287 4.51228 4.56035 4.58813 4.65341 4.71978 4.75885 4.80339 4.85662 4.89754 5.07981 5.15812 5.23724 5.29184 5.42158 5.46389 5.48186 5.54620 5.93993 6.13774 6.14522 6.27616 6.58851 6.64117 6.93184 7.16344 7.30545 7.60641 8.17375 8.73798 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007835 B = 0.003674 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3573.062859 B = 7619.580202 C = 9709.632010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 N -0.521 5.521 4 C 0.058 3.942 5 C 0.444 3.556 6 O -0.606 6.606 7 N -0.580 5.580 8 C -0.328 4.328 9 H 0.078 0.922 10 C -0.016 4.016 11 N -0.924 5.924 12 Si 0.992 3.008 13 H -0.269 1.269 14 H -0.271 1.271 15 H -0.274 1.274 16 C 0.073 3.927 17 H 0.107 0.893 18 C -0.180 4.180 19 C 0.128 3.872 20 N -0.697 5.697 21 C 0.592 3.408 22 O -0.589 6.589 23 C -0.103 4.103 24 C 0.037 3.963 25 N -0.454 5.454 26 C 0.063 3.937 27 C 0.189 3.811 28 N -0.501 5.501 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.393 0.607 37 H 0.276 0.724 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.085 0.915 43 H 0.415 0.585 44 H 0.203 0.797 45 H 0.099 0.901 46 H 0.113 0.887 47 H 0.099 0.901 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.792 11.157 -9.128 21.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.071 4.071 3 N -0.246 5.246 4 C -0.073 4.073 5 C 0.232 3.768 6 O -0.491 6.491 7 N -0.218 5.218 8 C -0.458 4.458 9 H 0.096 0.904 10 C -0.215 4.215 11 N -0.566 5.566 12 Si 0.816 3.184 13 H -0.195 1.195 14 H -0.196 1.196 15 H -0.199 1.199 16 C -0.035 4.035 17 H 0.125 0.875 18 C -0.239 4.239 19 C 0.004 3.996 20 N -0.346 5.346 21 C 0.380 3.620 22 O -0.471 6.471 23 C -0.231 4.231 24 C -0.104 4.104 25 N -0.134 5.134 26 C -0.077 4.077 27 C -0.096 4.096 28 N -0.220 5.220 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.226 0.774 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.103 0.897 43 H 0.252 0.748 44 H 0.219 0.781 45 H 0.117 0.883 46 H 0.131 0.869 47 H 0.118 0.882 48 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -16.228 11.021 -8.733 21.473 hybrid contribution 1.257 -0.020 0.568 1.379 sum -14.972 11.001 -8.165 20.294 Atomic orbital electron populations 1.21633 0.93808 1.01683 1.01843 1.22048 0.97111 0.87870 1.00104 1.61680 1.17981 1.19753 1.25152 1.21682 0.91467 1.02536 0.91584 1.20789 0.83339 0.82189 0.90520 1.90487 1.34712 1.54770 1.69131 1.41951 1.07605 1.63646 1.08646 1.19635 0.94206 1.46967 0.84986 0.90428 1.26023 0.94056 0.96800 1.04589 1.69686 0.98446 1.49993 1.38428 0.84946 0.77860 0.78625 0.77012 1.19468 1.19626 1.19871 1.22066 1.01720 0.91959 0.87798 0.87465 1.22370 0.99214 1.01896 1.00442 1.21524 0.93334 0.92736 0.92041 1.45692 1.42600 1.06428 1.39921 1.17278 0.81029 0.82440 0.81256 1.90714 1.44312 1.61747 1.50305 1.20600 1.05290 0.92351 1.04851 1.22811 0.95328 0.98413 0.93853 1.45638 1.29546 1.10249 1.28015 1.22533 1.02638 0.82440 1.00106 1.25945 1.02541 0.78746 1.02336 1.70579 1.09282 1.33949 1.08164 0.91605 0.93910 0.91355 0.92841 0.93604 0.91234 0.88948 0.77403 0.91457 0.89622 0.92455 0.91114 0.93095 0.89669 0.74792 0.78057 0.88260 0.86875 0.88210 0.73630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 9.94 71.98 0.72 -2.79 16 2 C 0.06 1.72 5.12 86.30 0.44 2.16 16 3 N -0.52 -16.70 3.41 -875.54 -2.99 -19.69 16 4 C 0.06 2.16 4.15 85.56 0.36 2.51 16 5 C 0.44 22.15 7.29 87.65 0.64 22.79 16 6 O -0.61 -34.36 14.67 -3.05 -0.04 -34.40 16 7 N -0.58 -31.33 5.29 -306.98 -1.62 -32.96 16 8 C -0.33 -19.38 9.68 84.04 0.81 -18.56 16 9 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 10 C -0.02 -0.87 5.50 84.92 0.47 -0.40 16 11 N -0.92 -51.86 13.05 21.66 0.28 -51.57 16 12 Si 0.99 44.46 29.55 68.60 2.03 46.48 16 13 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 14 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 15 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 16 C 0.07 1.77 2.39 44.92 0.11 1.87 16 17 H 0.11 2.29 6.68 -2.39 -0.02 2.27 16 18 C -0.18 -3.52 8.50 71.98 0.61 -2.91 16 19 C 0.13 3.57 4.92 86.38 0.43 3.99 16 20 N -0.70 -22.95 5.41 -466.48 -2.53 -25.48 16 21 C 0.59 21.10 7.81 86.63 0.68 21.77 16 22 O -0.59 -23.05 16.88 -4.11 -0.07 -23.12 16 23 C -0.10 -3.27 6.98 40.50 0.28 -2.99 16 24 C 0.04 0.89 11.26 83.72 0.94 1.83 16 25 N -0.45 -7.71 3.13 -551.85 -1.73 -9.44 16 26 C 0.06 0.34 11.15 127.77 1.42 1.76 16 27 C 0.19 3.92 12.55 180.10 2.26 6.18 16 28 N -0.50 -15.45 11.01 -188.81 -2.08 -17.53 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.47 6.94 -2.38 -0.02 1.45 16 32 H 0.05 1.35 6.24 -2.39 -0.01 1.34 16 33 H 0.05 1.78 6.43 -2.39 -0.02 1.77 16 34 H 0.07 2.29 7.13 -2.38 -0.02 2.27 16 35 H 0.09 3.33 6.07 -2.39 -0.01 3.32 16 36 H 0.39 20.42 7.90 -92.71 -0.73 19.68 16 37 H 0.28 14.50 8.31 -92.71 -0.77 13.73 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 39 H 0.06 1.22 6.68 -2.39 -0.02 1.20 16 40 H 0.07 1.30 6.50 -2.39 -0.02 1.29 16 41 H 0.05 1.58 6.50 -2.39 -0.02 1.57 16 42 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.42 14.47 7.80 -92.70 -0.72 13.74 16 44 H 0.20 3.92 8.06 -2.91 -0.02 3.90 16 45 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 46 H 0.11 0.17 8.14 -2.38 -0.02 0.16 16 47 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 48 H 0.25 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -82.65 394.39 0.97 -81.68 By element: Atomic # 1 Polarization: 49.23 SS G_CDS: -0.45 Total: 48.78 kcal Atomic # 6 Polarization: 27.07 SS G_CDS: 10.16 Total: 37.24 kcal Atomic # 7 Polarization: -146.01 SS G_CDS: -10.66 Total: -156.67 kcal Atomic # 8 Polarization: -57.40 SS G_CDS: -0.11 Total: -57.52 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -82.65 0.97 -81.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152743313.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.406 kcal (2) G-P(sol) polarization free energy of solvation -82.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds