Wall clock time and date at job start Tue Mar 31 2020 20:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46906 * 109.47399 * 2 1 4 4 C 1.46892 * 111.00251 * 160.18166 * 3 2 1 5 5 C 1.50706 * 109.47120 * 288.34313 * 4 3 2 6 6 O 1.21297 * 119.99807 * 354.48930 * 5 4 3 7 7 N 1.34776 * 120.00110 * 174.48292 * 5 4 3 8 8 C 1.37103 * 119.99722 * 180.02562 * 7 5 4 9 9 H 1.07993 * 120.00077 * 359.97438 * 8 7 5 10 10 C 1.38950 * 119.99556 * 180.02562 * 8 7 5 11 11 N 1.31413 * 120.00210 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 119.99705 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47130 * 59.99958 * 12 10 8 14 14 H 1.48499 * 109.47225 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47517 * 300.00201 * 12 10 8 16 16 C 1.46899 * 110.99651 * 284.13279 * 3 2 1 17 17 H 1.09002 * 109.47380 * 49.99728 * 16 3 2 18 18 C 1.52998 * 109.47537 * 289.99946 * 16 3 2 19 19 C 1.52997 * 109.47092 * 169.99335 * 16 3 2 20 20 N 1.46502 * 109.47580 * 303.78622 * 19 16 3 21 21 C 1.34773 * 120.00425 * 174.86331 * 20 19 16 22 22 O 1.21576 * 119.99480 * 359.97438 * 21 20 19 23 23 C 1.47705 * 120.00031 * 180.02562 * 21 20 19 24 24 N 1.31805 * 126.51746 * 0.03736 * 23 21 20 25 25 N 1.28476 * 110.07227 * 179.97438 * 24 23 21 26 26 H 0.97003 * 124.88301 * 180.02562 * 25 24 23 27 27 C 1.35032 * 110.22836 * 359.72909 * 25 24 23 28 28 C 1.35366 * 107.23017 * 0.43884 * 27 25 24 29 29 C 1.50695 * 127.24932 * 179.84753 * 28 27 25 30 30 H 1.09000 * 109.47110 * 306.05780 * 1 2 3 31 31 H 1.09001 * 109.47650 * 66.05656 * 1 2 3 32 32 H 1.09005 * 109.47266 * 186.05806 * 1 2 3 33 33 H 1.08998 * 109.47247 * 239.99591 * 2 1 3 34 34 H 1.09000 * 109.47185 * 119.99855 * 2 1 3 35 35 H 1.09001 * 109.47461 * 48.34130 * 4 3 2 36 36 H 1.09001 * 109.47483 * 168.34703 * 4 3 2 37 37 H 0.96997 * 119.99983 * 0.02562 * 7 5 4 38 38 H 0.96996 * 119.99470 * 179.97438 * 11 10 8 39 39 H 1.09007 * 109.46500 * 299.99782 * 18 16 3 40 40 H 1.08996 * 109.47234 * 59.99344 * 18 16 3 41 41 H 1.08999 * 109.47644 * 180.02562 * 18 16 3 42 42 H 1.09001 * 109.47369 * 183.78180 * 19 16 3 43 43 H 1.09006 * 109.46917 * 63.78769 * 19 16 3 44 44 H 0.97001 * 119.99401 * 354.85825 * 20 19 16 45 45 H 1.08001 * 126.38692 * 180.28890 * 27 25 24 46 46 H 1.09004 * 109.47274 * 269.68628 * 29 28 27 47 47 H 1.08999 * 109.47453 * 149.68065 * 29 28 27 48 48 H 1.09007 * 109.47085 * 29.68117 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4115 1.4513 0.4649 5 6 3.4594 1.1825 1.9471 6 8 2.4287 1.0571 2.5743 7 7 4.6473 1.0815 2.5756 8 6 4.6907 0.8365 3.9239 9 1 3.7731 0.7249 4.4823 10 6 5.9155 0.7328 4.5719 11 7 7.0320 0.8691 3.8925 12 14 5.9747 0.3997 6.4090 13 1 5.3045 -0.8932 6.6995 14 1 7.3897 0.3344 6.8549 15 1 5.2770 1.4926 7.1331 16 6 1.8794 1.9929 -1.3299 17 1 0.8649 1.8356 -1.6963 18 6 2.8757 1.3459 -2.2941 19 6 2.1609 3.4939 -1.2369 20 7 1.2664 4.0981 -0.2464 21 6 1.4034 5.3982 0.0812 22 8 2.2698 6.0695 -0.4451 23 6 0.5019 6.0071 1.0803 24 7 -0.4740 5.4025 1.7277 25 7 -1.0550 6.2290 2.5214 26 1 -1.8015 6.0101 3.1009 27 6 -0.4729 7.4445 2.4376 28 6 0.5222 7.3504 1.5247 29 6 1.4586 8.4442 1.0802 30 1 -0.3633 0.6049 0.8308 31 1 -0.3634 0.4171 -0.9392 32 1 -0.3634 -1.0220 0.1085 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.0058 0.7029 -0.0593 36 1 3.8155 2.4432 0.2624 37 1 5.4714 1.1821 2.0741 38 1 7.8869 0.7971 4.3451 39 1 3.8903 1.5034 -1.9278 40 1 2.6752 0.2766 -2.3604 41 1 2.7720 1.7973 -3.2808 42 1 1.9915 3.9563 -2.2093 43 1 3.1964 3.6513 -0.9351 44 1 0.5754 3.5623 0.1737 45 1 -0.7510 8.3278 2.9933 46 1 1.0286 8.9654 0.2249 47 1 2.4169 8.0091 0.7963 48 1 1.6078 9.1494 1.8979 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153226913.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:54 Heat of formation + Delta-G solvation = 6.516517 kcal Electronic energy + Delta-G solvation = -30156.379392 eV Core-core repulsion = 26055.189508 eV Total energy + Delta-G solvation = -4101.189884 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.65630 -39.60229 -38.63896 -37.21841 -34.40900 -33.75539 -33.01240 -31.96872 -31.21984 -30.97191 -29.91546 -27.23163 -26.56031 -26.33885 -24.20064 -23.61642 -22.29513 -20.63474 -20.21043 -19.71947 -18.69411 -18.22015 -17.73902 -16.93665 -16.55495 -15.94545 -15.81091 -15.29084 -14.80213 -14.63908 -14.29737 -14.19632 -13.87164 -13.80568 -13.55012 -13.37470 -13.11203 -12.89988 -12.87802 -12.61981 -12.49257 -12.10738 -12.10640 -11.94314 -11.78303 -11.48516 -11.26062 -11.18417 -11.01976 -10.80651 -10.60387 -10.40868 -10.34571 -10.15337 -9.86259 -9.44065 -9.40841 -8.90852 -8.73743 -8.37544 -7.89395 -7.82164 -6.35283 -3.75649 1.65807 2.07998 2.82043 3.23177 3.28321 3.32447 3.37757 3.60976 3.98854 4.00182 4.27173 4.51399 4.73813 4.75384 5.00692 5.17365 5.19261 5.24984 5.29141 5.33565 5.40633 5.47365 5.49858 5.56160 5.68548 5.72988 5.79089 5.83238 5.90243 5.91254 5.95395 6.04072 6.14844 6.16359 6.19465 6.33683 6.43432 6.49263 6.57262 6.65926 6.92607 7.32324 7.40982 7.60508 7.66220 7.95163 8.12978 8.44461 8.69626 9.25119 9.62605 10.15211 10.82698 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008131 B = 0.003812 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3442.580423 B = 7344.347957 C = 9138.336023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.054 3.946 3 N -0.505 5.505 4 C 0.042 3.958 5 C 0.446 3.554 6 O -0.574 6.574 7 N -0.568 5.568 8 C -0.296 4.296 9 H 0.101 0.899 10 C 0.022 3.978 11 N -0.903 5.903 12 Si 0.929 3.071 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.064 3.936 17 H 0.090 0.910 18 C -0.186 4.186 19 C 0.129 3.871 20 N -0.698 5.698 21 C 0.603 3.397 22 O -0.541 6.541 23 C -0.010 4.010 24 N -0.249 5.249 25 N -0.382 5.382 26 H 0.446 0.554 27 C -0.025 4.025 28 C -0.147 4.147 29 C -0.079 4.079 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.029 0.971 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.088 0.912 37 H 0.391 0.609 38 H 0.271 0.729 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.415 0.585 45 H 0.182 0.818 46 H 0.065 0.935 47 H 0.083 0.917 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.761 8.729 -10.061 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.074 4.074 3 N -0.228 5.228 4 C -0.089 4.089 5 C 0.231 3.769 6 O -0.457 6.457 7 N -0.205 5.205 8 C -0.426 4.426 9 H 0.119 0.881 10 C -0.179 4.179 11 N -0.545 5.545 12 Si 0.756 3.244 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.200 1.200 16 C -0.045 4.045 17 H 0.108 0.892 18 C -0.245 4.245 19 C 0.004 3.996 20 N -0.349 5.349 21 C 0.387 3.613 22 O -0.417 6.417 23 C -0.171 4.171 24 N -0.085 5.085 25 N -0.096 5.096 26 H 0.290 0.710 27 C -0.169 4.169 28 C -0.157 4.157 29 C -0.136 4.136 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.047 0.953 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.224 0.776 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.252 0.748 45 H 0.199 0.801 46 H 0.084 0.916 47 H 0.102 0.898 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.417 8.333 -9.539 19.191 hybrid contribution 0.812 -0.206 0.684 1.082 sum -13.605 8.127 -8.854 18.153 Atomic orbital electron populations 1.21700 0.95292 1.01135 1.01634 1.22088 0.95941 0.88427 1.00928 1.61781 1.19902 1.18990 1.22171 1.21918 0.89383 1.01865 0.95767 1.19766 0.84608 0.84279 0.88258 1.90516 1.33150 1.54891 1.67121 1.41863 1.06459 1.63073 1.09108 1.19609 0.94068 1.45324 0.83589 0.88139 1.25224 0.94771 0.97648 1.00305 1.69606 0.97637 1.50400 1.36822 0.85955 0.76963 0.79057 0.82434 1.20006 1.21007 1.20017 1.22033 1.00124 0.93168 0.89177 0.89184 1.22410 1.00571 1.01503 1.00007 1.21446 0.94847 0.91490 0.91782 1.45614 1.36417 1.09892 1.42956 1.16840 0.82388 0.81792 0.80288 1.90747 1.34592 1.62333 1.54006 1.21878 0.99106 0.93391 1.02746 1.73599 1.09225 1.20420 1.05257 1.43225 1.27576 1.06916 1.31866 0.70973 1.22671 0.98774 0.91218 1.04230 1.20390 1.00056 0.95179 1.00122 1.20168 0.98549 0.94601 1.00317 0.91351 0.93750 0.92967 0.95268 0.89762 0.93310 0.89379 0.77626 0.91926 0.91689 0.91811 0.91870 0.91255 0.90975 0.74816 0.80066 0.91647 0.89793 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.93 37.15 0.37 -1.46 16 2 C 0.05 0.81 5.14 -3.83 -0.02 0.79 16 3 N -0.50 -7.84 3.56 -228.09 -0.81 -8.66 16 4 C 0.04 0.75 4.19 -4.98 -0.02 0.73 16 5 C 0.45 10.61 7.19 -10.98 -0.08 10.53 16 6 O -0.57 -15.41 14.90 5.54 0.08 -15.32 16 7 N -0.57 -14.67 5.29 -10.96 -0.06 -14.73 16 8 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 9 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 10 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 11 N -0.90 -25.07 13.05 55.50 0.72 -24.35 16 12 Si 0.93 21.49 29.55 -169.99 -5.02 16.47 16 13 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 16 C 0.06 0.78 2.35 -67.72 -0.16 0.62 16 17 H 0.09 0.99 6.74 -51.93 -0.35 0.64 16 18 C -0.19 -1.94 8.51 37.16 0.32 -1.63 16 19 C 0.13 1.70 4.91 -4.04 -0.02 1.68 16 20 N -0.70 -10.43 5.36 -61.29 -0.33 -10.75 16 21 C 0.60 10.02 7.82 -12.39 -0.10 9.92 16 22 O -0.54 -9.95 15.11 5.30 0.08 -9.87 16 23 C -0.01 -0.15 7.13 -82.77 -0.59 -0.74 16 24 N -0.25 -3.51 11.92 33.42 0.40 -3.11 16 25 N -0.38 -3.89 6.83 30.47 0.21 -3.68 16 26 H 0.45 2.76 8.96 -190.43 -1.71 1.06 16 27 C -0.03 -0.24 11.97 -17.17 -0.21 -0.45 16 28 C -0.15 -1.92 6.25 -104.41 -0.65 -2.57 16 29 C -0.08 -0.91 9.93 36.00 0.36 -0.55 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.04 0.49 6.99 -51.93 -0.36 0.13 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.03 0.39 6.17 -51.93 -0.32 0.07 16 34 H 0.08 1.57 6.56 -51.93 -0.34 1.23 16 35 H 0.05 0.80 7.12 -51.93 -0.37 0.43 16 36 H 0.09 1.54 6.01 -51.93 -0.31 1.23 16 37 H 0.39 9.77 7.90 -40.82 -0.32 9.45 16 38 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.06 0.73 6.68 -51.93 -0.35 0.38 16 40 H 0.06 0.66 6.45 -51.93 -0.34 0.32 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.07 1.07 6.44 -51.93 -0.33 0.73 16 44 H 0.42 6.26 8.00 -40.82 -0.33 5.94 16 45 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.08 1.17 6.72 -51.93 -0.35 0.82 16 48 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 LS Contribution 390.52 15.07 5.89 5.89 Total: -1.00 -34.90 390.52 -8.13 -43.03 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: -8.25 Total: 16.27 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -1.04 Total: 8.82 kcal Atomic # 7 Polarization: -65.42 SS G_CDS: 0.13 Total: -65.28 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: 0.16 Total: -25.19 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.90 -8.13 -43.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153226913.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.550 kcal (2) G-P(sol) polarization free energy of solvation -34.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds