Wall clock time and date at job start Tue Mar 31 2020 20:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46906 * 109.47399 * 2 1 4 4 C 1.46892 * 111.00251 * 160.18166 * 3 2 1 5 5 C 1.50706 * 109.47120 * 288.34313 * 4 3 2 6 6 O 1.21297 * 119.99807 * 354.48930 * 5 4 3 7 7 N 1.34776 * 120.00110 * 174.48292 * 5 4 3 8 8 C 1.37103 * 119.99722 * 180.02562 * 7 5 4 9 9 H 1.07993 * 120.00077 * 359.97438 * 8 7 5 10 10 C 1.38950 * 119.99556 * 180.02562 * 8 7 5 11 11 N 1.31413 * 120.00210 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 119.99705 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47130 * 59.99958 * 12 10 8 14 14 H 1.48499 * 109.47225 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47517 * 300.00201 * 12 10 8 16 16 C 1.46899 * 110.99651 * 284.13279 * 3 2 1 17 17 H 1.09002 * 109.47380 * 49.99728 * 16 3 2 18 18 C 1.52998 * 109.47537 * 289.99946 * 16 3 2 19 19 C 1.52997 * 109.47092 * 169.99335 * 16 3 2 20 20 N 1.46502 * 109.47580 * 303.78622 * 19 16 3 21 21 C 1.34773 * 120.00425 * 174.86331 * 20 19 16 22 22 O 1.21576 * 119.99480 * 359.97438 * 21 20 19 23 23 C 1.47705 * 120.00031 * 180.02562 * 21 20 19 24 24 N 1.31805 * 126.51746 * 0.03736 * 23 21 20 25 25 N 1.28476 * 110.07227 * 179.97438 * 24 23 21 26 26 H 0.97003 * 124.88301 * 180.02562 * 25 24 23 27 27 C 1.35032 * 110.22836 * 359.72909 * 25 24 23 28 28 C 1.35366 * 107.23017 * 0.43884 * 27 25 24 29 29 C 1.50695 * 127.24932 * 179.84753 * 28 27 25 30 30 H 1.09000 * 109.47110 * 306.05780 * 1 2 3 31 31 H 1.09001 * 109.47650 * 66.05656 * 1 2 3 32 32 H 1.09005 * 109.47266 * 186.05806 * 1 2 3 33 33 H 1.08998 * 109.47247 * 239.99591 * 2 1 3 34 34 H 1.09000 * 109.47185 * 119.99855 * 2 1 3 35 35 H 1.09001 * 109.47461 * 48.34130 * 4 3 2 36 36 H 1.09001 * 109.47483 * 168.34703 * 4 3 2 37 37 H 0.96997 * 119.99983 * 0.02562 * 7 5 4 38 38 H 0.96996 * 119.99470 * 179.97438 * 11 10 8 39 39 H 1.09007 * 109.46500 * 299.99782 * 18 16 3 40 40 H 1.08996 * 109.47234 * 59.99344 * 18 16 3 41 41 H 1.08999 * 109.47644 * 180.02562 * 18 16 3 42 42 H 1.09001 * 109.47369 * 183.78180 * 19 16 3 43 43 H 1.09006 * 109.46917 * 63.78769 * 19 16 3 44 44 H 0.97001 * 119.99401 * 354.85825 * 20 19 16 45 45 H 1.08001 * 126.38692 * 180.28890 * 27 25 24 46 46 H 1.09004 * 109.47274 * 269.68628 * 29 28 27 47 47 H 1.08999 * 109.47453 * 149.68065 * 29 28 27 48 48 H 1.09007 * 109.47085 * 29.68117 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4115 1.4513 0.4649 5 6 3.4594 1.1825 1.9471 6 8 2.4287 1.0571 2.5743 7 7 4.6473 1.0815 2.5756 8 6 4.6907 0.8365 3.9239 9 1 3.7731 0.7249 4.4823 10 6 5.9155 0.7328 4.5719 11 7 7.0320 0.8691 3.8925 12 14 5.9747 0.3997 6.4090 13 1 5.3045 -0.8932 6.6995 14 1 7.3897 0.3344 6.8549 15 1 5.2770 1.4926 7.1331 16 6 1.8794 1.9929 -1.3299 17 1 0.8649 1.8356 -1.6963 18 6 2.8757 1.3459 -2.2941 19 6 2.1609 3.4939 -1.2369 20 7 1.2664 4.0981 -0.2464 21 6 1.4034 5.3982 0.0812 22 8 2.2698 6.0695 -0.4451 23 6 0.5019 6.0071 1.0803 24 7 -0.4740 5.4025 1.7277 25 7 -1.0550 6.2290 2.5214 26 1 -1.8015 6.0101 3.1009 27 6 -0.4729 7.4445 2.4376 28 6 0.5222 7.3504 1.5247 29 6 1.4586 8.4442 1.0802 30 1 -0.3633 0.6049 0.8308 31 1 -0.3634 0.4171 -0.9392 32 1 -0.3634 -1.0220 0.1085 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.0058 0.7029 -0.0593 36 1 3.8155 2.4432 0.2624 37 1 5.4714 1.1821 2.0741 38 1 7.8869 0.7971 4.3451 39 1 3.8903 1.5034 -1.9278 40 1 2.6752 0.2766 -2.3604 41 1 2.7720 1.7973 -3.2808 42 1 1.9915 3.9563 -2.2093 43 1 3.1964 3.6513 -0.9351 44 1 0.5754 3.5623 0.1737 45 1 -0.7510 8.3278 2.9933 46 1 1.0286 8.9654 0.2249 47 1 2.4169 8.0091 0.7963 48 1 1.6078 9.1494 1.8979 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153226913.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:52 Heat of formation + Delta-G solvation = -21.417974 kcal Electronic energy + Delta-G solvation = -30157.590722 eV Core-core repulsion = 26055.189508 eV Total energy + Delta-G solvation = -4102.401214 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.58473 -40.91204 -40.11812 -38.81160 -35.96217 -35.48105 -33.94861 -33.27962 -33.00260 -32.01072 -31.24709 -28.15745 -27.94909 -27.51685 -26.02267 -24.68167 -23.42354 -21.70353 -21.53685 -20.96971 -20.27779 -19.66357 -19.08271 -18.20628 -17.90829 -17.14555 -16.98164 -16.74025 -16.36955 -16.17128 -15.72227 -15.67503 -15.43818 -15.01024 -14.86172 -14.44797 -14.16307 -13.99654 -13.92724 -13.76833 -13.69904 -13.59553 -13.45321 -13.08126 -13.00211 -12.90872 -12.85108 -12.43748 -12.36464 -12.32196 -12.13348 -11.87111 -11.78665 -11.50156 -11.37987 -11.08167 -10.44986 -10.26366 -9.98357 -9.96658 -9.73932 -9.12781 -8.45032 -5.93476 0.57664 1.20875 1.38257 1.38976 1.50301 1.98072 2.09549 2.27180 2.34197 2.45040 2.77662 3.21611 3.40215 3.51148 3.75636 3.95918 4.03321 4.18062 4.23793 4.25320 4.33018 4.42350 4.50588 4.54728 4.57593 4.60029 4.64769 4.70207 4.80177 4.84597 4.89085 4.93084 5.05871 5.15242 5.21469 5.22274 5.29105 5.40606 5.46205 5.48626 5.58013 5.92349 6.12700 6.18892 6.26613 6.54411 6.62807 6.93073 7.14943 7.23644 7.59316 8.15825 8.72553 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008131 B = 0.003812 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3442.580423 B = 7344.347957 C = 9138.336023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.055 3.945 3 N -0.519 5.519 4 C 0.059 3.941 5 C 0.443 3.557 6 O -0.607 6.607 7 N -0.580 5.580 8 C -0.330 4.330 9 H 0.077 0.923 10 C -0.014 4.014 11 N -0.923 5.923 12 Si 0.991 3.009 13 H -0.270 1.270 14 H -0.270 1.270 15 H -0.274 1.274 16 C 0.072 3.928 17 H 0.111 0.889 18 C -0.181 4.181 19 C 0.127 3.873 20 N -0.695 5.695 21 C 0.593 3.407 22 O -0.570 6.570 23 C -0.046 4.046 24 N -0.275 5.275 25 N -0.367 5.367 26 H 0.463 0.537 27 C 0.004 3.996 28 C -0.179 4.179 29 C -0.073 4.073 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.041 0.959 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.393 0.607 38 H 0.276 0.724 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.053 0.947 44 H 0.414 0.586 45 H 0.232 0.768 46 H 0.072 0.928 47 H 0.051 0.949 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.939 9.253 -10.401 20.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.072 4.072 3 N -0.244 5.244 4 C -0.072 4.072 5 C 0.230 3.770 6 O -0.492 6.492 7 N -0.218 5.218 8 C -0.459 4.459 9 H 0.095 0.905 10 C -0.214 4.214 11 N -0.564 5.564 12 Si 0.815 3.185 13 H -0.195 1.195 14 H -0.194 1.194 15 H -0.200 1.200 16 C -0.036 4.036 17 H 0.129 0.871 18 C -0.240 4.240 19 C 0.003 3.997 20 N -0.345 5.345 21 C 0.378 3.622 22 O -0.448 6.448 23 C -0.205 4.205 24 N -0.112 5.112 25 N -0.083 5.083 26 H 0.311 0.689 27 C -0.141 4.141 28 C -0.190 4.190 29 C -0.131 4.131 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.226 0.774 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.072 0.928 44 H 0.250 0.750 45 H 0.248 0.752 46 H 0.091 0.909 47 H 0.070 0.930 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.609 8.830 -9.905 20.487 hybrid contribution 1.081 -0.336 0.789 1.380 sum -14.528 8.494 -9.116 19.140 Atomic orbital electron populations 1.21634 0.93676 1.01681 1.01972 1.22051 0.97219 0.87938 1.00006 1.61713 1.18166 1.19696 1.24780 1.21679 0.91593 1.02479 0.91482 1.20806 0.83411 0.82135 0.90613 1.90482 1.34182 1.55846 1.68729 1.41955 1.07239 1.63939 1.08632 1.19582 0.93812 1.47564 0.84962 0.90474 1.26017 0.94033 0.96775 1.04550 1.69677 0.98035 1.50272 1.38427 0.85020 0.77596 0.78838 0.77053 1.19545 1.19438 1.19956 1.22091 1.01887 0.91947 0.87694 0.87113 1.22372 0.99244 1.01835 1.00547 1.21573 0.93556 0.92443 0.92132 1.45678 1.36328 1.09502 1.42965 1.17201 0.82398 0.82123 0.80481 1.90712 1.35860 1.62996 1.55258 1.21936 1.00031 0.94841 1.03705 1.73516 1.09690 1.21627 1.06384 1.43371 1.27339 1.06794 1.30803 0.68888 1.23324 0.96545 0.91932 1.02294 1.20756 1.01874 0.94677 1.01661 1.20115 0.96746 0.94618 1.01596 0.93858 0.91081 0.91737 0.92728 0.93990 0.91410 0.88971 0.77396 0.91418 0.92621 0.91132 0.89502 0.89393 0.92839 0.74975 0.75195 0.90892 0.93014 0.89491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 9.93 71.98 0.71 -2.58 16 2 C 0.06 1.63 5.14 86.30 0.44 2.07 16 3 N -0.52 -15.94 3.56 -875.54 -3.12 -19.05 16 4 C 0.06 2.13 4.19 85.56 0.36 2.49 16 5 C 0.44 21.86 7.19 87.66 0.63 22.49 16 6 O -0.61 -34.05 14.90 -3.08 -0.05 -34.09 16 7 N -0.58 -31.07 5.29 -306.97 -1.62 -32.69 16 8 C -0.33 -19.32 9.68 84.04 0.81 -18.51 16 9 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 10 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 11 N -0.92 -51.54 13.05 21.66 0.28 -51.25 16 12 Si 0.99 44.24 29.55 68.60 2.03 46.26 16 13 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 14 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 15 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 16 C 0.07 1.62 2.35 44.91 0.11 1.73 16 17 H 0.11 2.10 6.74 -2.39 -0.02 2.08 16 18 C -0.18 -3.31 8.51 71.98 0.61 -2.70 16 19 C 0.13 3.29 4.91 86.38 0.42 3.71 16 20 N -0.69 -21.14 5.36 -466.10 -2.50 -23.63 16 21 C 0.59 20.43 7.82 86.75 0.68 21.11 16 22 O -0.57 -21.92 15.11 -3.96 -0.06 -21.98 16 23 C -0.05 -1.43 7.13 42.46 0.30 -1.13 16 24 N -0.27 -7.72 11.92 -48.18 -0.57 -8.30 16 25 N -0.37 -6.84 6.83 -57.51 -0.39 -7.23 16 26 H 0.46 4.74 8.96 -219.98 -1.97 2.77 16 27 C 0.00 0.06 11.97 83.54 1.00 1.06 16 28 C -0.18 -4.55 6.25 -19.72 -0.12 -4.67 16 29 C -0.07 -1.66 9.93 71.23 0.71 -0.95 16 30 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.38 6.99 -2.39 -0.02 1.37 16 32 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.05 1.32 6.17 -2.39 -0.01 1.31 16 34 H 0.04 1.59 6.56 -2.39 -0.02 1.58 16 35 H 0.07 2.20 7.12 -2.39 -0.02 2.18 16 36 H 0.09 3.29 6.01 -2.39 -0.01 3.28 16 37 H 0.39 20.29 7.90 -92.71 -0.73 19.56 16 38 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16 39 H 0.05 1.14 6.68 -2.38 -0.02 1.12 16 40 H 0.07 1.23 6.45 -2.39 -0.02 1.21 16 41 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.05 1.60 6.44 -2.38 -0.02 1.59 16 44 H 0.41 12.72 8.00 -92.71 -0.74 11.98 16 45 H 0.23 1.41 8.06 -2.91 -0.02 1.39 16 46 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.05 1.50 6.72 -2.39 -0.02 1.49 16 48 H 0.09 1.44 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -79.95 390.52 -1.28 -81.23 By element: Atomic # 1 Polarization: 49.36 SS G_CDS: -2.41 Total: 46.95 kcal Atomic # 6 Polarization: 16.66 SS G_CDS: 7.14 Total: 23.80 kcal Atomic # 7 Polarization: -134.24 SS G_CDS: -7.92 Total: -142.17 kcal Atomic # 8 Polarization: -55.96 SS G_CDS: -0.11 Total: -56.07 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -79.95 -1.28 -81.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153226913.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.808 kcal (2) G-P(sol) polarization free energy of solvation -79.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds