Wall clock time and date at job start Tue Mar 31 2020 20:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47031 * 2 1 4 4 C 1.46504 * 119.99764 * 269.99842 * 3 2 1 5 5 C 1.50704 * 109.47039 * 269.99910 * 4 3 2 6 6 H 1.08005 * 119.99992 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00113 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99782 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00329 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47203 * 59.99981 * 9 7 5 11 11 H 1.48496 * 109.47275 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46741 * 300.00294 * 9 7 5 13 13 C 1.34771 * 120.00396 * 89.99969 * 3 2 1 14 14 O 1.21277 * 120.00423 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99726 * 359.97438 * 13 3 2 16 16 N 1.46902 * 109.46851 * 180.02562 * 15 13 3 17 17 C 1.46900 * 110.99775 * 180.02562 * 16 15 13 18 18 C 1.52999 * 109.47245 * 179.97438 * 17 16 15 19 19 N 1.46504 * 109.47180 * 180.02562 * 18 17 16 20 20 C 1.34771 * 119.99957 * 179.97438 * 19 18 17 21 21 O 1.21688 * 120.00011 * 359.97438 * 20 19 18 22 22 C 1.46767 * 120.00285 * 179.97438 * 20 19 18 23 23 N 1.38150 * 126.84007 * 359.97438 * 22 20 19 24 24 H 0.97001 * 126.47223 * 359.96337 * 23 22 20 25 25 C 1.34497 * 107.05322 * 180.23698 * 23 22 20 26 26 N 1.30863 * 109.16126 * 359.59312 * 25 23 22 27 27 C 1.33318 * 109.68510 * 0.41168 * 26 25 23 28 28 C 1.50702 * 126.10574 * 179.76803 * 27 26 25 29 29 H 1.08987 * 109.47078 * 300.00260 * 1 2 3 30 30 H 1.09001 * 109.46472 * 60.00406 * 1 2 3 31 31 H 1.09001 * 109.46877 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47305 * 239.99959 * 2 1 3 33 33 H 1.08997 * 109.47193 * 119.99636 * 2 1 3 34 34 H 1.08995 * 109.47108 * 29.99667 * 4 3 2 35 35 H 1.08996 * 109.46906 * 150.00033 * 4 3 2 36 36 H 0.96997 * 119.99997 * 180.02562 * 8 7 5 37 37 H 1.08995 * 109.47092 * 60.00031 * 15 13 3 38 38 H 1.08999 * 109.47173 * 300.00178 * 15 13 3 39 39 H 1.00895 * 110.99716 * 303.94761 * 16 15 13 40 40 H 1.09004 * 109.47415 * 59.99440 * 17 16 15 41 41 H 1.08997 * 109.47082 * 300.00096 * 17 16 15 42 42 H 1.08996 * 109.46878 * 60.00000 * 18 17 16 43 43 H 1.09002 * 109.46641 * 299.99808 * 18 17 16 44 44 H 0.96999 * 120.00023 * 359.97438 * 19 18 17 45 45 H 1.07995 * 125.41901 * 179.75475 * 25 23 22 46 46 H 1.09001 * 109.47328 * 269.97186 * 28 27 26 47 47 H 1.08991 * 109.47030 * 29.97797 * 28 27 26 48 48 H 1.09009 * 109.46920 * 149.97990 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6859 1.8350 -1.7038 6 1 4.3427 1.2302 -1.0961 7 6 4.1492 2.3895 -2.8780 8 7 3.3492 3.1256 -3.6182 9 14 5.9132 2.0955 -3.4176 10 1 6.1404 0.6387 -3.5947 11 1 6.1607 2.7955 -4.7036 12 1 6.8410 2.6189 -2.3829 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9913 1.3064 2.4723 16 7 2.3090 2.2067 3.5888 17 6 2.0756 1.5465 4.8801 18 6 2.4174 2.5127 6.0161 19 7 2.1852 1.8541 7.3040 20 6 2.4208 2.5183 8.4527 21 8 2.8268 3.6650 8.4202 22 6 2.1877 1.8587 9.7429 23 7 1.7311 0.5705 9.9441 24 1 1.5017 -0.0740 9.2563 25 6 1.6589 0.3807 11.2736 26 7 2.0511 1.4693 11.8848 27 6 2.3793 2.3963 10.9846 28 6 2.8736 3.7883 11.2831 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5818 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1385 36 1 3.6750 3.5154 -4.4445 37 1 2.6211 0.4188 2.5302 38 1 0.9432 1.0126 2.5298 39 1 3.2573 2.5447 3.5221 40 1 2.7067 0.6608 4.9547 41 1 1.0284 1.2536 4.9544 42 1 1.7866 3.3985 5.9417 43 1 3.4648 2.8051 5.9415 44 1 1.8619 0.9399 7.3299 45 1 1.3320 -0.5267 11.7595 46 1 2.0244 4.4678 11.3555 47 1 3.4184 3.7858 12.2271 48 1 3.5356 4.1183 10.4823 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153816665.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:29 Heat of formation + Delta-G solvation = -12.785286 kcal Electronic energy + Delta-G solvation = -27987.954205 eV Core-core repulsion = 23885.927332 eV Total energy + Delta-G solvation = -4102.026873 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.68873 -39.71505 -39.17146 -36.69329 -35.34112 -34.69343 -33.56087 -32.81018 -31.65556 -30.18869 -29.84033 -27.86988 -27.13174 -25.36098 -23.52172 -23.06089 -22.61501 -22.17347 -21.52581 -20.21691 -19.28918 -18.44625 -16.79603 -16.59661 -16.46870 -16.41085 -16.26272 -15.98469 -15.55251 -15.10559 -14.95192 -14.55250 -14.33560 -14.11298 -13.72705 -13.49574 -13.33123 -13.31354 -13.28139 -13.09316 -12.48795 -12.42487 -12.28222 -12.02215 -11.84889 -11.71842 -11.50073 -11.20043 -10.95317 -10.89084 -10.78012 -10.55231 -10.49559 -10.28285 -10.15457 -9.67664 -9.58611 -8.99900 -8.93431 -8.50201 -8.45123 -7.69091 -6.06061 -4.11157 0.82916 2.33976 2.38572 2.60096 2.91006 3.29348 3.34462 3.35066 3.41043 3.70860 3.98429 4.26471 4.32050 4.43527 4.49731 4.66803 4.75795 4.80940 5.02121 5.09803 5.18880 5.21166 5.28265 5.36794 5.42201 5.50536 5.56337 5.59530 5.60805 5.66963 5.71975 5.74718 5.91303 5.96538 6.18026 6.18188 6.42635 6.65510 6.67966 6.94481 7.07319 7.22570 7.43765 7.43946 7.52384 7.72239 7.90061 8.21379 8.39700 8.87820 9.07664 9.53921 11.01890 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019912 B = 0.001706 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.864711 B =16411.217364 C =17150.405354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.528 4.528 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.503 3.497 14 O -0.526 6.526 15 C 0.043 3.957 16 N -0.668 5.668 17 C 0.051 3.949 18 C 0.120 3.880 19 N -0.729 5.729 20 C 0.595 3.405 21 O -0.515 6.515 22 C -0.096 4.096 23 N -0.557 5.557 24 H 0.422 0.578 25 C 0.222 3.778 26 N -0.500 5.500 27 C 0.101 3.899 28 C -0.080 4.080 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.032 0.968 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.054 0.946 38 H 0.095 0.905 39 H 0.356 0.644 40 H 0.034 0.966 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.393 0.607 45 H 0.217 0.783 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.875 -11.997 25.930 29.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.567 4.567 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.289 3.711 14 O -0.402 6.402 15 C -0.089 4.089 16 N -0.302 5.302 17 C -0.080 4.080 18 C -0.003 4.003 19 N -0.381 5.381 20 C 0.381 3.619 21 O -0.390 6.390 22 C -0.211 4.211 23 N -0.162 5.162 24 H 0.261 0.739 25 C -0.062 4.062 26 N -0.220 5.220 27 C -0.034 4.034 28 C -0.138 4.138 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.176 0.824 40 H 0.052 0.948 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.226 0.774 45 H 0.233 0.767 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.911 -9.955 26.490 29.130 hybrid contribution 1.219 -2.115 -1.601 2.919 sum -5.693 -12.070 24.888 28.240 Atomic orbital electron populations 1.22227 0.96790 1.01331 1.02435 1.21406 0.93518 0.84319 1.02529 1.48253 1.63984 1.13173 1.07711 1.19259 0.96182 0.93707 0.78035 1.21382 0.96944 1.32038 1.06291 0.92641 1.24937 0.97830 0.94922 0.96412 1.69920 1.35714 1.33289 1.14314 0.86563 0.84818 0.78172 0.77872 1.20323 1.21147 1.20198 1.20119 0.79075 0.87111 0.84837 1.90691 1.45040 1.17643 1.86871 1.21905 1.02358 0.94210 0.90467 1.59971 1.33201 1.37497 0.99526 1.22066 1.01598 0.95021 0.89267 1.21330 1.02654 0.96284 0.80043 1.45768 1.69010 1.17152 1.06131 1.16772 0.77861 0.85633 0.81600 1.90867 1.45376 1.16422 1.86370 1.20922 1.16619 0.87157 0.96420 1.43335 1.50600 1.12616 1.09671 0.73945 1.25191 1.01300 1.00026 0.79688 1.70177 1.18202 1.00316 1.33296 1.21142 0.98414 0.96946 0.86865 1.20332 1.01682 0.88586 1.03162 0.93063 0.91942 0.92247 0.89939 0.92018 0.95038 0.93836 0.92641 0.92819 0.88672 0.82390 0.94785 0.90405 0.89666 0.90819 0.77445 0.76704 0.90537 0.90938 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.11 1.59 5.93 -4.04 -0.02 1.57 16 3 N -0.60 -12.13 2.46 -175.05 -0.43 -12.56 16 4 C 0.25 6.36 5.16 -5.19 -0.03 6.33 16 5 C -0.53 -14.76 9.39 -34.44 -0.32 -15.08 16 6 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 9 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.50 10.02 7.71 -10.99 -0.08 9.94 16 14 O -0.53 -13.02 15.78 5.56 0.09 -12.93 16 15 C 0.04 0.58 4.72 -4.97 -0.02 0.56 16 16 N -0.67 -8.62 6.13 -115.06 -0.70 -9.32 16 17 C 0.05 0.43 5.80 -3.82 -0.02 0.41 16 18 C 0.12 1.10 5.93 -4.04 -0.02 1.08 16 19 N -0.73 -5.35 5.55 -61.59 -0.34 -5.69 16 20 C 0.60 6.01 7.79 -12.82 -0.10 5.91 16 21 O -0.52 -7.05 14.82 5.20 0.08 -6.98 16 22 C -0.10 -0.83 7.08 -82.14 -0.58 -1.42 16 23 N -0.56 -2.58 6.07 -10.79 -0.07 -2.65 16 24 H 0.42 0.36 8.32 -40.82 -0.34 0.02 16 25 C 0.22 1.17 13.01 -90.57 -1.18 0.00 16 26 N -0.50 -4.70 11.20 -10.64 -0.12 -4.82 16 27 C 0.10 1.02 7.15 -82.52 -0.59 0.43 16 28 C -0.08 -0.74 9.88 36.01 0.36 -0.39 16 29 H 0.05 0.60 7.22 -51.94 -0.37 0.23 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 33 H 0.06 0.74 6.44 -51.93 -0.33 0.40 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.05 0.63 7.40 -51.93 -0.38 0.24 16 38 H 0.10 1.10 7.18 -51.93 -0.37 0.73 16 39 H 0.36 4.97 8.43 -39.29 -0.33 4.64 16 40 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.39 1.54 7.72 -40.82 -0.31 1.23 16 45 H 0.22 0.15 8.06 -52.49 -0.42 -0.28 16 46 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.09 0.93 6.48 -51.92 -0.34 0.59 16 LS Contribution 403.46 15.07 6.08 6.08 Total: -1.00 -38.03 403.46 -9.40 -47.43 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -7.36 Total: 1.20 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -2.34 Total: 9.24 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.93 Total: -60.70 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: 0.16 Total: -19.91 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.03 -9.40 -47.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153816665.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.646 kcal (2) G-P(sol) polarization free energy of solvation -38.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds