Wall clock time and date at job start Tue Mar 31 2020 20:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47031 * 2 1 4 4 C 1.46504 * 119.99764 * 269.99842 * 3 2 1 5 5 C 1.50704 * 109.47039 * 269.99910 * 4 3 2 6 6 H 1.08005 * 119.99992 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00113 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99782 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00329 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47203 * 59.99981 * 9 7 5 11 11 H 1.48496 * 109.47275 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46741 * 300.00294 * 9 7 5 13 13 C 1.34771 * 120.00396 * 89.99969 * 3 2 1 14 14 O 1.21277 * 120.00423 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99726 * 359.97438 * 13 3 2 16 16 N 1.46902 * 109.46851 * 180.02562 * 15 13 3 17 17 C 1.46900 * 110.99775 * 180.02562 * 16 15 13 18 18 C 1.52999 * 109.47245 * 179.97438 * 17 16 15 19 19 N 1.46504 * 109.47180 * 180.02562 * 18 17 16 20 20 C 1.34771 * 119.99957 * 179.97438 * 19 18 17 21 21 O 1.21688 * 120.00011 * 359.97438 * 20 19 18 22 22 C 1.46767 * 120.00285 * 179.97438 * 20 19 18 23 23 N 1.38150 * 126.84007 * 359.97438 * 22 20 19 24 24 H 0.97001 * 126.47223 * 359.96337 * 23 22 20 25 25 C 1.34497 * 107.05322 * 180.23698 * 23 22 20 26 26 N 1.30863 * 109.16126 * 359.59312 * 25 23 22 27 27 C 1.33318 * 109.68510 * 0.41168 * 26 25 23 28 28 C 1.50702 * 126.10574 * 179.76803 * 27 26 25 29 29 H 1.08987 * 109.47078 * 300.00260 * 1 2 3 30 30 H 1.09001 * 109.46472 * 60.00406 * 1 2 3 31 31 H 1.09001 * 109.46877 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47305 * 239.99959 * 2 1 3 33 33 H 1.08997 * 109.47193 * 119.99636 * 2 1 3 34 34 H 1.08995 * 109.47108 * 29.99667 * 4 3 2 35 35 H 1.08996 * 109.46906 * 150.00033 * 4 3 2 36 36 H 0.96997 * 119.99997 * 180.02562 * 8 7 5 37 37 H 1.08995 * 109.47092 * 60.00031 * 15 13 3 38 38 H 1.08999 * 109.47173 * 300.00178 * 15 13 3 39 39 H 1.00895 * 110.99716 * 303.94761 * 16 15 13 40 40 H 1.09004 * 109.47415 * 59.99440 * 17 16 15 41 41 H 1.08997 * 109.47082 * 300.00096 * 17 16 15 42 42 H 1.08996 * 109.46878 * 60.00000 * 18 17 16 43 43 H 1.09002 * 109.46641 * 299.99808 * 18 17 16 44 44 H 0.96999 * 120.00023 * 359.97438 * 19 18 17 45 45 H 1.07995 * 125.41901 * 179.75475 * 25 23 22 46 46 H 1.09001 * 109.47328 * 269.97186 * 28 27 26 47 47 H 1.08991 * 109.47030 * 29.97797 * 28 27 26 48 48 H 1.09009 * 109.46920 * 149.97990 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6859 1.8350 -1.7038 6 1 4.3427 1.2302 -1.0961 7 6 4.1492 2.3895 -2.8780 8 7 3.3492 3.1256 -3.6182 9 14 5.9132 2.0955 -3.4176 10 1 6.1404 0.6387 -3.5947 11 1 6.1607 2.7955 -4.7036 12 1 6.8410 2.6189 -2.3829 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9913 1.3064 2.4723 16 7 2.3090 2.2067 3.5888 17 6 2.0756 1.5465 4.8801 18 6 2.4174 2.5127 6.0161 19 7 2.1852 1.8541 7.3040 20 6 2.4208 2.5183 8.4527 21 8 2.8268 3.6650 8.4202 22 6 2.1877 1.8587 9.7429 23 7 1.7311 0.5705 9.9441 24 1 1.5017 -0.0740 9.2563 25 6 1.6589 0.3807 11.2736 26 7 2.0511 1.4693 11.8848 27 6 2.3793 2.3963 10.9846 28 6 2.8736 3.7883 11.2831 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5818 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1385 36 1 3.6750 3.5154 -4.4445 37 1 2.6211 0.4188 2.5302 38 1 0.9432 1.0126 2.5298 39 1 3.2573 2.5447 3.5221 40 1 2.7067 0.6608 4.9547 41 1 1.0284 1.2536 4.9544 42 1 1.7866 3.3985 5.9417 43 1 3.4648 2.8051 5.9415 44 1 1.8619 0.9399 7.3299 45 1 1.3320 -0.5267 11.7595 46 1 2.0244 4.4678 11.3555 47 1 3.4184 3.7858 12.2271 48 1 3.5356 4.1183 10.4823 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153816665.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:27 Heat of formation + Delta-G solvation = -43.375140 kcal Electronic energy + Delta-G solvation = -27989.280680 eV Core-core repulsion = 23885.927332 eV Total energy + Delta-G solvation = -4103.353349 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.22697 -40.75049 -40.42199 -37.63716 -36.86425 -35.59894 -34.87437 -34.14617 -32.32102 -31.63911 -30.78894 -29.22863 -28.15551 -26.64119 -24.71669 -24.17927 -23.67450 -23.19115 -22.18164 -20.86576 -20.02160 -19.73672 -18.61598 -17.91981 -17.52504 -17.28716 -17.12001 -16.94703 -16.76486 -16.30566 -15.98729 -15.53856 -15.26250 -15.17550 -14.89525 -14.63015 -14.50683 -14.43498 -14.11002 -13.94223 -13.75911 -13.52073 -13.45991 -13.22071 -13.12116 -13.07335 -12.67736 -12.63513 -12.49836 -12.43389 -12.13442 -11.85093 -11.72950 -11.59046 -11.04210 -10.99458 -10.64363 -10.57081 -10.34175 -9.53201 -9.45527 -9.39560 -8.22056 -6.37224 0.21690 1.35676 1.40256 1.47353 1.75432 1.83702 1.88235 2.04183 2.20110 2.30693 2.44950 3.07162 3.29764 3.55193 3.71561 3.75485 3.86292 4.07511 4.12086 4.14243 4.28959 4.34381 4.39255 4.45669 4.51402 4.67182 4.69161 4.78487 4.85592 4.89785 4.94432 4.96811 5.01604 5.02231 5.07240 5.21523 5.24061 5.41945 5.52545 5.58368 5.81861 5.92321 6.07001 6.21861 6.29115 6.41998 6.71115 6.85198 6.91549 7.03437 7.29182 7.54099 8.84577 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019912 B = 0.001706 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.864711 B =16411.217364 C =17150.405354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.604 5.604 4 C 0.262 3.738 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.490 3.510 14 O -0.589 6.589 15 C 0.062 3.938 16 N -0.693 5.693 17 C 0.061 3.939 18 C 0.126 3.874 19 N -0.708 5.708 20 C 0.592 3.408 21 O -0.562 6.562 22 C -0.107 4.107 23 N -0.538 5.538 24 H 0.442 0.558 25 C 0.244 3.756 26 N -0.540 5.540 27 C 0.075 3.925 28 C -0.078 4.078 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.020 0.980 35 H -0.007 1.007 36 H 0.266 0.734 37 H 0.086 0.914 38 H 0.126 0.874 39 H 0.346 0.654 40 H 0.061 0.939 41 H 0.100 0.900 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.413 0.587 45 H 0.265 0.735 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.361 -16.348 27.503 32.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.141 3.859 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.194 4.194 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.205 1.205 12 H -0.204 1.204 13 C 0.279 3.721 14 O -0.470 6.470 15 C -0.070 4.070 16 N -0.326 5.326 17 C -0.068 4.068 18 C 0.002 3.998 19 N -0.361 5.361 20 C 0.380 3.620 21 O -0.440 6.440 22 C -0.224 4.224 23 N -0.144 5.144 24 H 0.285 0.715 25 C -0.041 4.041 26 N -0.261 5.261 27 C -0.059 4.059 28 C -0.135 4.135 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.038 0.962 35 H 0.011 0.989 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.144 0.856 39 H 0.164 0.836 40 H 0.080 0.920 41 H 0.118 0.882 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.250 0.750 45 H 0.280 0.720 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.453 -14.432 28.055 32.418 hybrid contribution 1.299 -0.803 -2.036 2.545 sum -6.155 -15.235 26.019 30.773 Atomic orbital electron populations 1.22162 0.94660 1.03483 1.01655 1.21764 0.95242 0.81229 1.04022 1.48282 1.64082 1.15157 1.06116 1.18661 0.95208 0.91434 0.80629 1.21690 0.97910 1.31979 1.06474 0.92700 1.25889 1.02408 0.94539 0.96538 1.70053 1.37831 1.34193 1.14763 0.85467 0.78997 0.79042 0.77292 1.18302 1.20529 1.20385 1.21371 0.77402 0.86690 0.86683 1.90657 1.47721 1.20637 1.87938 1.21808 1.04687 0.93922 0.86543 1.59939 1.32760 1.38741 1.01171 1.22060 1.03445 0.94907 0.86381 1.21131 1.01247 0.96205 0.81237 1.45494 1.68043 1.17829 1.04748 1.17014 0.77231 0.85202 0.82585 1.90846 1.47564 1.18531 1.87068 1.20598 1.17793 0.88816 0.95150 1.43213 1.49502 1.11420 1.10301 0.71524 1.26123 0.98240 1.00094 0.79601 1.70154 1.20125 1.01580 1.34210 1.21297 0.99340 0.97383 0.87909 1.20248 1.01400 0.89104 1.02765 0.91910 0.94713 0.88520 0.91216 0.87711 0.96184 0.98905 0.92478 0.89632 0.85647 0.83577 0.92041 0.88171 0.92000 0.92396 0.75026 0.71972 0.90670 0.90390 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 10.24 71.98 0.74 -2.84 16 2 C 0.10 2.74 5.93 86.38 0.51 3.26 16 3 N -0.60 -24.55 2.46 -826.14 -2.03 -26.58 16 4 C 0.26 14.13 5.16 85.63 0.44 14.57 16 5 C -0.54 -31.08 9.39 25.60 0.24 -30.84 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.30 5.46 84.65 0.46 0.76 16 8 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 9 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 10 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 13 C 0.49 19.44 7.71 87.66 0.68 20.12 16 14 O -0.59 -30.43 15.78 -3.02 -0.05 -30.48 16 15 C 0.06 1.48 4.72 85.56 0.40 1.88 16 16 N -0.69 -16.62 6.13 -517.93 -3.17 -19.79 16 17 C 0.06 0.83 5.80 86.30 0.50 1.33 16 18 C 0.13 2.18 5.93 86.38 0.51 2.70 16 19 N -0.71 -9.06 5.55 -467.00 -2.59 -11.65 16 20 C 0.59 11.75 7.79 86.47 0.67 12.42 16 21 O -0.56 -16.15 14.82 -4.31 -0.06 -16.22 16 22 C -0.11 -1.74 7.08 40.01 0.28 -1.46 16 23 N -0.54 -3.27 6.07 -188.04 -1.14 -4.41 16 24 H 0.44 -1.16 8.32 -92.71 -0.77 -1.93 16 25 C 0.24 1.75 13.01 180.33 2.35 4.09 16 26 N -0.54 -9.35 11.20 -187.59 -2.10 -11.45 16 27 C 0.08 1.50 7.15 41.96 0.30 1.80 16 28 C -0.08 -1.54 9.88 71.24 0.70 -0.84 16 29 H 0.06 1.25 7.22 -2.39 -0.02 1.23 16 30 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 33 H 0.10 2.00 6.44 -2.39 -0.02 1.98 16 34 H 0.02 1.10 8.07 -2.39 -0.02 1.09 16 35 H -0.01 -0.45 7.42 -2.39 -0.02 -0.47 16 36 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.09 1.55 7.40 -2.39 -0.02 1.53 16 38 H 0.13 2.27 7.18 -2.39 -0.02 2.26 16 39 H 0.35 9.53 8.43 -89.70 -0.76 8.77 16 40 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.41 1.75 7.72 -92.71 -0.72 1.03 16 45 H 0.26 -1.02 8.06 -2.91 -0.02 -1.04 16 46 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 48 H 0.07 1.69 6.48 -2.38 -0.02 1.67 16 Total: -1.00 -91.40 403.46 -1.28 -92.68 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -1.23 Total: 10.40 kcal Atomic # 6 Polarization: 18.16 SS G_CDS: 8.79 Total: 26.96 kcal Atomic # 7 Polarization: -119.43 SS G_CDS: -10.75 Total: -130.19 kcal Atomic # 8 Polarization: -46.58 SS G_CDS: -0.11 Total: -46.69 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -91.40 -1.28 -92.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153816665.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.304 kcal (2) G-P(sol) polarization free energy of solvation -91.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds