Wall clock time and date at job start Tue Mar 31 2020 20:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46896 * 109.47626 * 2 1 4 4 C 1.46892 * 111.00557 * 165.13195 * 3 2 1 5 5 C 1.50700 * 109.47084 * 284.49437 * 4 3 2 6 6 O 1.21288 * 119.99990 * 354.79996 * 5 4 3 7 7 N 1.34778 * 120.00277 * 174.81378 * 5 4 3 8 8 C 1.37097 * 120.00234 * 179.97438 * 7 5 4 9 9 H 1.07997 * 119.99569 * 359.97438 * 8 7 5 10 10 C 1.38943 * 119.99947 * 179.97438 * 8 7 5 11 11 N 1.31412 * 120.00406 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00113 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46750 * 89.99631 * 12 10 8 14 14 H 1.48490 * 109.47325 * 210.00020 * 12 10 8 15 15 H 1.48495 * 109.47040 * 330.00502 * 12 10 8 16 16 C 1.46907 * 110.99728 * 289.08502 * 3 2 1 17 17 H 1.09004 * 109.46943 * 48.58118 * 16 3 2 18 18 C 1.52994 * 109.47356 * 288.58345 * 16 3 2 19 19 C 1.53001 * 109.47056 * 168.57968 * 16 3 2 20 20 N 1.46493 * 109.47347 * 304.50873 * 19 16 3 21 21 C 1.34778 * 119.99948 * 184.00114 * 20 19 16 22 22 O 1.21599 * 120.00098 * 359.97438 * 21 20 19 23 23 C 1.47435 * 120.00062 * 179.97438 * 21 20 19 24 24 C 1.38048 * 126.41308 * 0.02562 * 23 21 20 25 25 N 1.34259 * 107.41299 * 179.97438 * 24 23 21 26 26 H 0.97009 * 125.74785 * 179.97438 * 25 24 23 27 27 N 1.39926 * 108.49579 * 0.02562 * 25 24 23 28 28 C 1.30451 * 108.89628 * 359.73095 * 27 25 24 29 29 C 1.50699 * 125.99041 * 180.25932 * 28 27 25 30 30 H 1.09002 * 109.46841 * 301.83652 * 1 2 3 31 31 H 1.09003 * 109.47073 * 61.83572 * 1 2 3 32 32 H 1.08998 * 109.47343 * 181.83736 * 1 2 3 33 33 H 1.09001 * 109.47336 * 120.00356 * 2 1 3 34 34 H 1.09006 * 109.46838 * 239.99480 * 2 1 3 35 35 H 1.09005 * 109.47320 * 44.48897 * 4 3 2 36 36 H 1.08997 * 109.47787 * 164.48940 * 4 3 2 37 37 H 0.97003 * 119.99949 * 359.97438 * 7 5 4 38 38 H 0.97005 * 120.00111 * 179.97438 * 11 10 8 39 39 H 1.08996 * 109.47286 * 180.02562 * 18 16 3 40 40 H 1.09004 * 109.46881 * 300.00347 * 18 16 3 41 41 H 1.09007 * 109.47323 * 59.99491 * 18 16 3 42 42 H 1.08999 * 109.46634 * 64.50416 * 19 16 3 43 43 H 1.08997 * 109.47101 * 184.50187 * 19 16 3 44 44 H 0.97007 * 120.00252 * 3.99212 * 20 19 16 45 45 H 1.08003 * 126.28984 * 359.97438 * 24 23 21 46 46 H 1.08991 * 109.47568 * 270.17992 * 29 28 27 47 47 H 1.09006 * 109.46568 * 30.17735 * 29 28 27 48 48 H 1.08998 * 109.47155 * 150.17138 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4449 1.4394 0.3519 5 6 3.6049 1.2217 1.8344 6 8 2.6250 1.1333 2.5437 7 7 4.8369 1.1255 2.3724 8 6 4.9825 0.9279 3.7212 9 1 4.1099 0.8498 4.3527 10 6 6.2526 0.8282 4.2756 11 7 7.3144 0.9228 3.5071 12 14 6.4511 0.5598 6.1136 13 1 6.4821 -0.8970 6.4005 14 1 7.7198 1.1815 6.5705 15 1 5.3089 1.1811 6.8307 16 6 1.7725 2.0307 -1.2961 17 1 0.7380 1.8614 -1.5949 18 6 2.7109 1.4375 -2.3488 19 6 2.0285 3.5342 -1.1739 20 7 1.2072 4.0830 -0.0921 21 6 1.2068 5.4094 0.1472 22 8 1.8884 6.1505 -0.5346 23 6 0.3798 5.9619 1.2355 24 6 -0.4389 5.2468 2.0866 25 7 -1.0092 6.1246 2.9272 26 1 -1.6347 5.9064 3.6359 27 7 -0.5504 7.4074 2.6080 28 6 0.2809 7.3216 1.6063 29 6 1.0060 8.4717 0.9563 30 1 -0.3633 0.5421 0.8731 31 1 -0.3633 0.4851 -0.9060 32 1 -0.3634 -1.0271 0.0329 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 3.9829 0.6613 -0.1897 36 1 3.8487 2.4152 0.0823 37 1 5.6207 1.1960 1.8052 38 1 8.2011 0.8535 3.8942 39 1 2.5278 1.9170 -3.3104 40 1 3.7454 1.6067 -2.0500 41 1 2.5286 0.3663 -2.4359 42 1 3.0820 3.7065 -0.9535 43 1 1.7686 4.0244 -2.1120 44 1 0.6636 3.4919 0.4520 45 1 -0.5922 4.1778 2.0777 46 1 0.3993 8.8713 0.1439 47 1 1.1840 9.2531 1.6952 48 1 1.9595 8.1226 0.5600 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154548771.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:35 Heat of formation + Delta-G solvation = 2.264700 kcal Electronic energy + Delta-G solvation = -30123.984590 eV Core-core repulsion = 26022.610333 eV Total energy + Delta-G solvation = -4101.374257 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.40964 -39.56599 -38.55722 -37.27943 -34.41787 -33.81863 -32.94701 -31.92568 -31.24334 -30.39727 -29.91255 -28.00899 -26.48993 -26.22603 -24.23009 -23.09079 -22.41770 -20.40296 -20.18519 -19.60983 -18.85087 -18.32081 -17.77370 -16.66801 -16.36713 -15.89351 -15.44985 -15.21056 -14.78450 -14.63918 -14.36663 -14.22154 -14.18660 -13.82186 -13.61532 -13.50566 -13.03737 -12.88264 -12.80158 -12.70352 -12.50904 -12.17704 -12.03330 -12.01699 -11.84584 -11.54460 -11.37002 -11.25642 -11.07790 -10.97820 -10.69899 -10.44590 -10.39811 -10.20815 -9.68653 -9.55043 -9.47431 -8.97778 -8.66208 -8.47068 -7.95555 -7.90540 -6.40318 -3.81015 1.49764 2.16233 2.63923 3.17462 3.26206 3.31352 3.41099 3.62984 3.92313 3.93784 4.22742 4.49174 4.63251 4.72015 4.93380 5.11221 5.14497 5.18572 5.25538 5.32369 5.35663 5.38132 5.43668 5.52173 5.61993 5.66572 5.69901 5.75292 5.81503 5.84533 5.86144 5.98357 6.01054 6.06352 6.14253 6.25146 6.33296 6.39702 6.47683 6.66795 7.01657 7.22370 7.30729 7.46595 7.55699 7.83340 8.07559 8.51038 8.63579 9.19776 9.56984 10.08686 10.77529 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008177 B = 0.003755 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3423.252375 B = 7455.349236 C = 9259.779856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.053 3.947 3 N -0.506 5.506 4 C 0.042 3.958 5 C 0.446 3.554 6 O -0.577 6.577 7 N -0.567 5.567 8 C -0.297 4.297 9 H 0.102 0.898 10 C 0.022 3.978 11 N -0.902 5.902 12 Si 0.928 3.072 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.270 1.270 16 C 0.063 3.937 17 H 0.091 0.909 18 C -0.185 4.185 19 C 0.132 3.868 20 N -0.711 5.711 21 C 0.593 3.407 22 O -0.552 6.552 23 C -0.287 4.287 24 C 0.114 3.886 25 N -0.462 5.462 26 H 0.443 0.557 27 N -0.305 5.305 28 C 0.134 3.866 29 C -0.077 4.077 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.029 0.971 35 H 0.050 0.950 36 H 0.089 0.911 37 H 0.391 0.609 38 H 0.271 0.729 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.407 0.593 45 H 0.188 0.812 46 H 0.078 0.922 47 H 0.070 0.930 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.150 4.146 -10.129 17.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 N -0.230 5.230 4 C -0.089 4.089 5 C 0.231 3.769 6 O -0.461 6.461 7 N -0.204 5.204 8 C -0.427 4.427 9 H 0.119 0.881 10 C -0.179 4.179 11 N -0.543 5.543 12 Si 0.755 3.245 13 H -0.205 1.205 14 H -0.209 1.209 15 H -0.195 1.195 16 C -0.046 4.046 17 H 0.109 0.891 18 C -0.245 4.245 19 C 0.008 3.992 20 N -0.362 5.362 21 C 0.381 3.619 22 O -0.431 6.431 23 C -0.302 4.302 24 C -0.039 4.039 25 N -0.166 5.166 26 H 0.288 0.712 27 N -0.129 5.129 28 C -0.034 4.034 29 C -0.136 4.136 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.224 0.776 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.243 0.757 45 H 0.205 0.795 46 H 0.096 0.904 47 H 0.088 0.912 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.947 5.640 -8.904 18.290 hybrid contribution 1.020 -1.777 0.159 2.055 sum -13.928 3.863 -8.745 16.893 Atomic orbital electron populations 1.21736 0.95330 1.01118 1.01774 1.22086 0.95738 0.88586 1.01027 1.61753 1.16675 1.17672 1.26913 1.21914 0.88832 1.01927 0.96250 1.19751 0.84144 0.84289 0.88707 1.90488 1.38234 1.55253 1.62105 1.41878 1.06108 1.63493 1.08886 1.19647 0.93589 1.46138 0.83309 0.88056 1.25232 0.94935 0.97520 1.00219 1.69610 0.98304 1.50417 1.35993 0.85895 0.77772 0.78400 0.82431 1.20481 1.20938 1.19513 1.22061 1.00336 0.93266 0.88983 0.89123 1.22409 1.00882 1.01576 0.99598 1.21359 0.95775 0.91833 0.90277 1.45607 1.47893 1.06988 1.35726 1.17202 0.80624 0.81845 0.82270 1.90712 1.43599 1.58875 1.49953 1.20291 1.10318 0.93784 1.05763 1.23261 0.93382 0.97095 0.90198 1.46072 1.37314 1.04891 1.28357 0.71215 1.77131 1.17709 0.99337 1.18691 1.22468 0.93856 0.94670 0.92444 1.20337 1.00657 0.93174 0.99415 0.91639 0.93445 0.92821 0.89752 0.95270 0.93214 0.89335 0.77616 0.91918 0.91863 0.91697 0.91918 0.91558 0.91104 0.75695 0.79489 0.90363 0.91152 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.92 37.16 0.37 -1.18 16 2 C 0.05 0.71 5.19 -3.83 -0.02 0.69 16 3 N -0.51 -6.99 3.35 -228.09 -0.76 -7.75 16 4 C 0.04 0.69 4.03 -4.98 -0.02 0.67 16 5 C 0.45 9.98 7.29 -10.98 -0.08 9.90 16 6 O -0.58 -14.48 15.12 5.55 0.08 -14.39 16 7 N -0.57 -14.06 5.29 -10.97 -0.06 -14.12 16 8 C -0.30 -8.16 9.68 -14.94 -0.14 -8.30 16 9 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 10 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 11 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16 12 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 16 C 0.06 0.68 2.37 -67.71 -0.16 0.52 16 17 H 0.09 0.87 6.34 -51.93 -0.33 0.54 16 18 C -0.19 -1.79 8.52 37.15 0.32 -1.47 16 19 C 0.13 1.61 4.94 -4.05 -0.02 1.59 16 20 N -0.71 -9.26 5.40 -61.39 -0.33 -9.59 16 21 C 0.59 8.93 7.81 -12.51 -0.10 8.83 16 22 O -0.55 -9.69 14.92 5.28 0.08 -9.61 16 23 C -0.29 -3.97 6.13 -105.06 -0.64 -4.61 16 24 C 0.11 1.24 11.52 -16.56 -0.19 1.05 16 25 N -0.46 -4.85 7.29 30.85 0.22 -4.62 16 26 H 0.44 3.03 8.96 -182.72 -1.64 1.39 16 27 N -0.31 -4.13 12.63 33.89 0.43 -3.70 16 28 C 0.13 1.87 7.26 -82.02 -0.60 1.28 16 29 C -0.08 -0.94 9.92 36.01 0.36 -0.58 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.44 6.60 -51.93 -0.34 0.10 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 1.42 6.86 -51.93 -0.36 1.06 16 34 H 0.03 0.35 6.35 -51.93 -0.33 0.02 16 35 H 0.05 0.76 7.31 -51.93 -0.38 0.38 16 36 H 0.09 1.42 5.98 -51.93 -0.31 1.11 16 37 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 38 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.68 6.72 -51.93 -0.35 0.33 16 41 H 0.06 0.60 6.57 -51.93 -0.34 0.25 16 42 H 0.07 0.92 6.48 -51.93 -0.34 0.58 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.41 4.94 7.02 -40.82 -0.29 4.65 16 45 H 0.19 1.49 7.46 -52.48 -0.39 1.10 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.10 1.31 6.56 -51.93 -0.34 0.97 16 LS Contribution 389.44 15.07 5.87 5.87 Total: -1.00 -33.92 389.44 -7.90 -41.82 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -8.10 Total: 15.01 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -1.03 Total: 8.88 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: 0.22 Total: -63.57 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: 0.16 Total: -24.00 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.92 -7.90 -41.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154548771.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.085 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds