Wall clock time and date at job start Tue Mar 31 2020 20:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46896 * 109.47626 * 2 1 4 4 C 1.46892 * 111.00557 * 165.13195 * 3 2 1 5 5 C 1.50700 * 109.47084 * 284.49437 * 4 3 2 6 6 O 1.21288 * 119.99990 * 354.79996 * 5 4 3 7 7 N 1.34778 * 120.00277 * 174.81378 * 5 4 3 8 8 C 1.37097 * 120.00234 * 179.97438 * 7 5 4 9 9 H 1.07997 * 119.99569 * 359.97438 * 8 7 5 10 10 C 1.38943 * 119.99947 * 179.97438 * 8 7 5 11 11 N 1.31412 * 120.00406 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00113 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46750 * 89.99631 * 12 10 8 14 14 H 1.48490 * 109.47325 * 210.00020 * 12 10 8 15 15 H 1.48495 * 109.47040 * 330.00502 * 12 10 8 16 16 C 1.46907 * 110.99728 * 289.08502 * 3 2 1 17 17 H 1.09004 * 109.46943 * 48.58118 * 16 3 2 18 18 C 1.52994 * 109.47356 * 288.58345 * 16 3 2 19 19 C 1.53001 * 109.47056 * 168.57968 * 16 3 2 20 20 N 1.46493 * 109.47347 * 304.50873 * 19 16 3 21 21 C 1.34778 * 119.99948 * 184.00114 * 20 19 16 22 22 O 1.21599 * 120.00098 * 359.97438 * 21 20 19 23 23 C 1.47435 * 120.00062 * 179.97438 * 21 20 19 24 24 C 1.38048 * 126.41308 * 0.02562 * 23 21 20 25 25 N 1.34259 * 107.41299 * 179.97438 * 24 23 21 26 26 H 0.97009 * 125.74785 * 179.97438 * 25 24 23 27 27 N 1.39926 * 108.49579 * 0.02562 * 25 24 23 28 28 C 1.30451 * 108.89628 * 359.73095 * 27 25 24 29 29 C 1.50699 * 125.99041 * 180.25932 * 28 27 25 30 30 H 1.09002 * 109.46841 * 301.83652 * 1 2 3 31 31 H 1.09003 * 109.47073 * 61.83572 * 1 2 3 32 32 H 1.08998 * 109.47343 * 181.83736 * 1 2 3 33 33 H 1.09001 * 109.47336 * 120.00356 * 2 1 3 34 34 H 1.09006 * 109.46838 * 239.99480 * 2 1 3 35 35 H 1.09005 * 109.47320 * 44.48897 * 4 3 2 36 36 H 1.08997 * 109.47787 * 164.48940 * 4 3 2 37 37 H 0.97003 * 119.99949 * 359.97438 * 7 5 4 38 38 H 0.97005 * 120.00111 * 179.97438 * 11 10 8 39 39 H 1.08996 * 109.47286 * 180.02562 * 18 16 3 40 40 H 1.09004 * 109.46881 * 300.00347 * 18 16 3 41 41 H 1.09007 * 109.47323 * 59.99491 * 18 16 3 42 42 H 1.08999 * 109.46634 * 64.50416 * 19 16 3 43 43 H 1.08997 * 109.47101 * 184.50187 * 19 16 3 44 44 H 0.97007 * 120.00252 * 3.99212 * 20 19 16 45 45 H 1.08003 * 126.28984 * 359.97438 * 24 23 21 46 46 H 1.08991 * 109.47568 * 270.17992 * 29 28 27 47 47 H 1.09006 * 109.46568 * 30.17735 * 29 28 27 48 48 H 1.08998 * 109.47155 * 150.17138 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4449 1.4394 0.3519 5 6 3.6049 1.2217 1.8344 6 8 2.6250 1.1333 2.5437 7 7 4.8369 1.1255 2.3724 8 6 4.9825 0.9279 3.7212 9 1 4.1099 0.8498 4.3527 10 6 6.2526 0.8282 4.2756 11 7 7.3144 0.9228 3.5071 12 14 6.4511 0.5598 6.1136 13 1 6.4821 -0.8970 6.4005 14 1 7.7198 1.1815 6.5705 15 1 5.3089 1.1811 6.8307 16 6 1.7725 2.0307 -1.2961 17 1 0.7380 1.8614 -1.5949 18 6 2.7109 1.4375 -2.3488 19 6 2.0285 3.5342 -1.1739 20 7 1.2072 4.0830 -0.0921 21 6 1.2068 5.4094 0.1472 22 8 1.8884 6.1505 -0.5346 23 6 0.3798 5.9619 1.2355 24 6 -0.4389 5.2468 2.0866 25 7 -1.0092 6.1246 2.9272 26 1 -1.6347 5.9064 3.6359 27 7 -0.5504 7.4074 2.6080 28 6 0.2809 7.3216 1.6063 29 6 1.0060 8.4717 0.9563 30 1 -0.3633 0.5421 0.8731 31 1 -0.3633 0.4851 -0.9060 32 1 -0.3634 -1.0271 0.0329 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 3.9829 0.6613 -0.1897 36 1 3.8487 2.4152 0.0823 37 1 5.6207 1.1960 1.8052 38 1 8.2011 0.8535 3.8942 39 1 2.5278 1.9170 -3.3104 40 1 3.7454 1.6067 -2.0500 41 1 2.5286 0.3663 -2.4359 42 1 3.0820 3.7065 -0.9535 43 1 1.7686 4.0244 -2.1120 44 1 0.6636 3.4919 0.4520 45 1 -0.5922 4.1778 2.0777 46 1 0.3993 8.8713 0.1439 47 1 1.1840 9.2531 1.6952 48 1 1.9595 8.1226 0.5600 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154548771.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:33 Heat of formation + Delta-G solvation = -24.178440 kcal Electronic energy + Delta-G solvation = -30125.131250 eV Core-core repulsion = 26022.610333 eV Total energy + Delta-G solvation = -4102.520917 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.37467 -40.78832 -39.91178 -38.75377 -35.90340 -35.40718 -33.91113 -33.23566 -32.87272 -31.49195 -31.01151 -28.96726 -27.90560 -27.21626 -25.96239 -24.07154 -23.41183 -21.60769 -21.40081 -20.70187 -20.25880 -19.71580 -19.21768 -18.09795 -17.40791 -17.02023 -16.81899 -16.46529 -16.22636 -16.03163 -15.59111 -15.56514 -15.34117 -15.22993 -14.87388 -14.61256 -14.21832 -13.92488 -13.85373 -13.71471 -13.65302 -13.52127 -13.41866 -13.01884 -12.95092 -12.87697 -12.81609 -12.39103 -12.34321 -12.27172 -12.12615 -11.99281 -11.81751 -11.46063 -11.35082 -10.83048 -10.51429 -10.22888 -10.06022 -9.94841 -9.65454 -9.11781 -8.43044 -5.90778 0.56165 1.11013 1.37942 1.41075 1.53228 1.81235 2.13619 2.28248 2.38199 2.54434 2.81443 3.24593 3.46323 3.53607 3.78061 3.83793 4.04765 4.22703 4.23953 4.29651 4.34426 4.39261 4.47486 4.50529 4.58878 4.62214 4.70126 4.74515 4.77830 4.85907 4.89463 4.92652 4.95097 5.01303 5.21210 5.26055 5.32322 5.43554 5.48476 5.49558 5.62554 5.95344 6.15237 6.25058 6.28072 6.50119 6.65433 6.78348 7.17943 7.41617 7.63572 8.19059 8.74686 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008177 B = 0.003755 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3423.252375 B = 7455.349236 C = 9259.779856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.054 3.946 3 N -0.514 5.514 4 C 0.058 3.942 5 C 0.447 3.553 6 O -0.605 6.605 7 N -0.582 5.582 8 C -0.325 4.325 9 H 0.080 0.920 10 C -0.015 4.015 11 N -0.924 5.924 12 Si 0.989 3.011 13 H -0.270 1.270 14 H -0.275 1.275 15 H -0.273 1.273 16 C 0.072 3.928 17 H 0.115 0.885 18 C -0.183 4.183 19 C 0.131 3.869 20 N -0.703 5.703 21 C 0.588 3.412 22 O -0.586 6.586 23 C -0.320 4.320 24 C 0.133 3.867 25 N -0.449 5.449 26 H 0.459 0.541 27 N -0.326 5.326 28 C 0.117 3.883 29 C -0.074 4.074 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.392 0.608 38 H 0.275 0.725 39 H 0.082 0.918 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.082 0.918 44 H 0.412 0.588 45 H 0.219 0.781 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.473 3.369 -10.846 19.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.074 4.074 3 N -0.239 5.239 4 C -0.074 4.074 5 C 0.234 3.766 6 O -0.490 6.490 7 N -0.220 5.220 8 C -0.455 4.455 9 H 0.098 0.902 10 C -0.215 4.215 11 N -0.566 5.566 12 Si 0.813 3.187 13 H -0.196 1.196 14 H -0.200 1.200 15 H -0.198 1.198 16 C -0.036 4.036 17 H 0.132 0.868 18 C -0.242 4.242 19 C 0.007 3.993 20 N -0.354 5.354 21 C 0.377 3.623 22 O -0.468 6.468 23 C -0.335 4.335 24 C -0.021 4.021 25 N -0.154 5.154 26 H 0.308 0.692 27 N -0.149 5.149 28 C -0.051 4.051 29 C -0.132 4.132 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.113 0.887 37 H 0.225 0.775 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.100 0.900 44 H 0.249 0.751 45 H 0.235 0.765 46 H 0.108 0.892 47 H 0.100 0.900 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.302 4.845 -9.623 19.540 hybrid contribution 1.335 -1.556 0.360 2.082 sum -14.967 3.288 -9.263 17.906 Atomic orbital electron populations 1.21683 0.93186 1.01986 1.02371 1.22064 0.97447 0.87962 0.99881 1.61694 1.14593 1.18395 1.29210 1.21686 0.91235 1.02650 0.91798 1.20788 0.82896 0.81844 0.91103 1.90457 1.38967 1.55801 1.63728 1.41981 1.07059 1.64720 1.08243 1.19618 0.93395 1.47885 0.84608 0.90197 1.25980 0.94332 0.96890 1.04254 1.69681 0.98626 1.50754 1.37522 0.84987 0.77703 0.78604 0.77422 1.19582 1.19976 1.19787 1.22093 1.01988 0.91785 0.87725 0.86760 1.22384 0.99771 1.02029 0.99975 1.21433 0.94558 0.92905 0.90439 1.45581 1.47599 1.06435 1.35784 1.17442 0.80388 0.82222 0.82272 1.90685 1.45108 1.59701 1.51271 1.20385 1.11958 0.94272 1.06846 1.23653 0.91584 0.98174 0.88712 1.46118 1.36923 1.04030 1.28370 0.69247 1.77070 1.18163 1.00874 1.18822 1.22757 0.94210 0.95348 0.92769 1.20309 0.99833 0.93124 0.99982 0.92894 0.91023 0.91781 0.93847 0.93408 0.91679 0.88738 0.77482 0.91556 0.89878 0.92746 0.91251 0.93543 0.89958 0.75109 0.76461 0.89236 0.90044 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.92 71.98 0.71 -1.87 16 2 C 0.05 1.34 5.19 86.30 0.45 1.79 16 3 N -0.51 -13.35 3.35 -875.53 -2.94 -16.29 16 4 C 0.06 1.86 4.03 85.56 0.35 2.21 16 5 C 0.45 20.25 7.29 87.66 0.64 20.88 16 6 O -0.60 -30.82 15.12 -3.05 -0.05 -30.86 16 7 N -0.58 -29.54 5.29 -306.99 -1.62 -31.17 16 8 C -0.33 -18.29 9.68 84.04 0.81 -17.48 16 9 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 10 C -0.02 -0.83 5.50 84.92 0.47 -0.36 16 11 N -0.92 -50.50 13.05 21.66 0.28 -50.22 16 12 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 13 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 14 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 16 C 0.07 1.37 2.37 44.91 0.11 1.47 16 17 H 0.11 1.71 6.34 -2.39 -0.02 1.70 16 18 C -0.18 -2.96 8.52 71.98 0.61 -2.35 16 19 C 0.13 2.98 4.94 86.38 0.43 3.41 16 20 N -0.70 -17.50 5.40 -466.38 -2.52 -20.02 16 21 C 0.59 17.61 7.81 86.67 0.68 18.29 16 22 O -0.59 -20.90 14.92 -4.03 -0.06 -20.96 16 23 C -0.32 -8.70 6.13 -20.15 -0.12 -8.82 16 24 C 0.13 2.69 11.52 84.28 0.97 3.66 16 25 N -0.45 -8.70 7.29 -56.31 -0.41 -9.11 16 26 H 0.46 5.36 8.96 -213.42 -1.91 3.45 16 27 N -0.33 -8.56 12.63 -46.68 -0.59 -9.15 16 28 C 0.12 3.26 7.26 43.51 0.32 3.58 16 29 C -0.07 -1.83 9.92 71.24 0.71 -1.12 16 30 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.03 6.60 -2.39 -0.02 1.01 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.04 1.45 6.86 -2.39 -0.02 1.43 16 34 H 0.05 1.01 6.35 -2.38 -0.02 1.00 16 35 H 0.07 1.93 7.31 -2.38 -0.02 1.91 16 36 H 0.09 2.99 5.98 -2.39 -0.01 2.98 16 37 H 0.39 19.34 7.90 -92.71 -0.73 18.60 16 38 H 0.28 14.15 8.31 -92.70 -0.77 13.38 16 39 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 40 H 0.05 1.01 6.72 -2.38 -0.02 1.00 16 41 H 0.07 1.06 6.57 -2.38 -0.02 1.05 16 42 H 0.05 1.26 6.48 -2.39 -0.02 1.25 16 43 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.41 9.27 7.02 -92.70 -0.65 8.62 16 45 H 0.22 2.89 7.46 -2.91 -0.02 2.86 16 46 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 48 H 0.08 2.24 6.56 -2.39 -0.02 2.22 16 Total: -1.00 -75.18 389.44 -1.02 -76.19 By element: Atomic # 1 Polarization: 45.34 SS G_CDS: -2.26 Total: 43.08 kcal Atomic # 6 Polarization: 16.19 SS G_CDS: 7.12 Total: 23.31 kcal Atomic # 7 Polarization: -128.16 SS G_CDS: -7.80 Total: -135.95 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -0.11 Total: -51.82 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -75.18 -1.02 -76.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154548771.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.014 kcal (2) G-P(sol) polarization free energy of solvation -75.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds