Wall clock time and date at job start Tue Mar 31 2020 20:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 109.47200 * 2 1 4 4 C 1.46494 * 120.00253 * 270.00380 * 3 2 1 5 5 C 1.50704 * 109.46918 * 269.99962 * 4 3 2 6 6 H 1.08000 * 119.99635 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00065 * 179.97438 * 5 4 3 8 8 N 1.31520 * 120.00240 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00048 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47238 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47253 * 120.00076 * 9 7 5 12 12 H 1.48499 * 109.47377 * 239.99846 * 9 7 5 13 13 C 1.34778 * 119.99637 * 89.99916 * 3 2 1 14 14 O 1.21283 * 119.99630 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00234 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47173 * 179.97438 * 15 13 3 17 17 C 1.46901 * 111.00370 * 179.97438 * 16 15 13 18 18 C 1.52996 * 109.47243 * 179.97438 * 17 16 15 19 19 C 1.53005 * 109.46649 * 180.02562 * 18 17 16 20 20 N 1.46505 * 109.46534 * 180.02562 * 19 18 17 21 21 C 1.34777 * 119.99718 * 180.02562 * 20 19 18 22 22 O 1.21579 * 120.00077 * 359.97438 * 21 20 19 23 23 C 1.47706 * 120.00293 * 179.97438 * 21 20 19 24 24 C 1.41500 * 126.52096 * 179.97438 * 23 21 20 25 25 C 1.35365 * 105.50387 * 180.02562 * 24 23 21 26 26 N 1.35033 * 107.23063 * 359.97438 * 25 24 23 27 27 H 0.97001 * 124.89001 * 180.02562 * 26 25 24 28 28 N 1.28474 * 110.22757 * 0.02562 * 26 25 24 29 29 H 1.09001 * 109.47121 * 299.99889 * 1 2 3 30 30 H 1.08995 * 109.46936 * 59.99909 * 1 2 3 31 31 H 1.08993 * 109.46980 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47121 * 240.00111 * 2 1 3 33 33 H 1.08995 * 109.46936 * 120.00091 * 2 1 3 34 34 H 1.09004 * 109.47394 * 29.99471 * 4 3 2 35 35 H 1.09000 * 109.47340 * 149.99902 * 4 3 2 36 36 H 0.96991 * 119.99933 * 179.97438 * 8 7 5 37 37 H 1.08993 * 109.47261 * 60.00203 * 15 13 3 38 38 H 1.09004 * 109.46915 * 299.99556 * 15 13 3 39 39 H 1.00898 * 111.00140 * 303.95635 * 16 15 13 40 40 H 1.09002 * 109.46534 * 59.99748 * 17 16 15 41 41 H 1.08997 * 109.47242 * 300.00617 * 17 16 15 42 42 H 1.09000 * 109.47036 * 60.00263 * 18 17 16 43 43 H 1.09000 * 109.47324 * 299.99729 * 18 17 16 44 44 H 1.09000 * 109.47384 * 60.00234 * 19 18 17 45 45 H 1.08998 * 109.47196 * 299.99391 * 19 18 17 46 46 H 0.96995 * 120.00601 * 359.97438 * 20 19 18 47 47 H 1.08000 * 127.24928 * 0.02691 * 24 23 21 48 48 H 1.08004 * 126.38789 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1491 2.3897 -2.8779 8 7 3.3488 3.1250 -3.6185 9 14 5.9135 2.0967 -3.4168 10 1 6.6015 1.2425 -2.4158 11 1 5.9215 1.4172 -4.7372 12 1 6.6205 3.3981 -3.5257 13 6 2.2430 2.0165 1.1673 14 8 2.6469 3.1601 1.1673 15 6 1.9924 1.3059 2.4723 16 7 2.3110 2.2057 3.5889 17 6 2.0775 1.5455 4.8803 18 6 2.4203 2.5114 6.0162 19 6 2.1776 1.8234 7.3612 20 7 2.5053 2.7486 8.4489 21 6 2.3679 2.3567 9.7311 22 8 1.9716 1.2357 9.9851 23 6 2.6987 3.2892 10.8279 24 6 2.6059 3.0247 12.2148 25 6 3.0085 4.1624 12.8279 26 7 3.3222 5.0493 11.8591 27 1 3.6418 5.9517 12.0154 28 7 3.1363 4.5260 10.7007 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.5817 1.6878 -2.0284 35 1 2.0956 3.1411 -1.1383 36 1 3.6749 3.5155 -4.4443 37 1 2.6229 0.4187 2.5299 38 1 0.9444 1.0114 2.5302 39 1 3.2593 2.5438 3.5215 40 1 2.7080 0.6595 4.9545 41 1 1.0301 1.2533 4.9548 42 1 1.7901 3.3977 5.9421 43 1 3.4679 2.8031 5.9415 44 1 2.8081 0.9373 7.4350 45 1 1.1302 1.5314 7.4362 46 1 2.8217 3.6428 8.2464 47 1 2.2821 2.1081 12.6853 48 1 3.0685 4.3295 13.8932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154887282.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:17 Heat of formation + Delta-G solvation = 1.231834 kcal Electronic energy + Delta-G solvation = -27517.852050 eV Core-core repulsion = 23416.433005 eV Total energy + Delta-G solvation = -4101.419045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.08574 -39.66114 -39.09729 -36.74979 -35.31898 -34.83294 -32.82099 -32.51803 -31.58111 -30.93793 -30.05473 -28.04041 -26.43316 -24.82541 -23.29373 -22.97179 -22.18736 -22.00475 -21.78619 -20.30994 -19.05305 -18.33965 -17.35792 -16.65056 -16.51176 -16.33179 -16.06367 -16.00101 -15.59276 -15.31057 -14.58373 -14.42097 -14.38117 -14.15052 -13.84221 -13.60346 -13.50873 -13.35912 -13.26595 -12.63555 -12.39256 -12.04061 -11.94793 -11.82424 -11.69245 -11.45359 -11.41740 -11.16679 -11.08561 -10.87441 -10.70933 -10.52529 -10.46946 -10.11573 -9.94691 -9.69781 -9.59696 -9.34388 -8.89163 -8.42437 -8.31478 -7.61909 -6.02897 -4.07585 1.14510 1.67306 2.34882 2.86938 3.08655 3.30011 3.37300 3.40538 3.48990 3.76765 4.01968 4.32052 4.36879 4.46782 4.70094 4.75046 4.95238 4.97369 5.11684 5.16430 5.27323 5.29006 5.31533 5.34351 5.41948 5.48563 5.55110 5.56525 5.69078 5.83844 5.86675 5.89925 5.94963 6.05861 6.12945 6.25790 6.44618 6.51072 6.88049 7.10154 7.15400 7.40056 7.42096 7.49101 7.59237 7.89247 7.94164 8.25796 8.47387 8.92783 9.15404 9.57643 11.05117 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018400 B = 0.001562 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.369524 B =17927.125520 C =18885.180324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.504 3.496 14 O -0.529 6.529 15 C 0.041 3.959 16 N -0.674 5.674 17 C 0.064 3.936 18 C -0.131 4.131 19 C 0.121 3.879 20 N -0.716 5.716 21 C 0.603 3.397 22 O -0.533 6.533 23 C -0.014 4.014 24 C -0.180 4.180 25 C -0.015 4.015 26 N -0.382 5.382 27 H 0.448 0.552 28 N -0.258 5.258 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.262 0.738 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.352 0.648 40 H 0.032 0.968 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.408 0.592 47 H 0.164 0.836 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.162 -1.443 30.825 31.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.290 3.710 14 O -0.406 6.406 15 C -0.091 4.091 16 N -0.306 5.306 17 C -0.066 4.066 18 C -0.169 4.169 19 C -0.003 4.003 20 N -0.368 5.368 21 C 0.387 3.613 22 O -0.407 6.407 23 C -0.175 4.175 24 C -0.208 4.208 25 C -0.159 4.159 26 N -0.096 5.096 27 H 0.292 0.708 28 N -0.095 5.095 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.113 0.887 39 H 0.171 0.829 40 H 0.050 0.950 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.244 0.756 47 H 0.182 0.818 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -3.593 -0.498 29.965 30.184 hybrid contribution 1.817 -0.465 0.267 1.894 sum -1.776 -0.964 30.232 30.299 Atomic orbital electron populations 1.22225 0.96797 1.01356 1.02398 1.21406 0.93526 0.84295 1.02553 1.48250 1.64033 1.13199 1.07708 1.19253 0.96155 0.93688 0.78151 1.21483 0.96987 1.31779 1.06185 0.92502 1.24938 0.97812 0.94968 0.96425 1.69943 1.35544 1.33533 1.14308 0.86451 0.84702 0.78016 0.78279 1.19879 1.20988 1.20900 1.20184 0.78881 0.87077 0.84900 1.90672 1.45210 1.17737 1.86956 1.21899 1.02347 0.94327 0.90520 1.60079 1.32730 1.37751 1.00087 1.21819 1.01483 0.94842 0.88447 1.21749 1.03014 0.99898 0.92225 1.21370 1.01573 0.92471 0.84890 1.45848 1.67524 1.18228 1.05160 1.16869 0.77498 0.85486 0.81439 1.90813 1.46394 1.19773 1.83755 1.22001 1.08132 0.92408 0.95001 1.21840 1.06873 1.00179 0.91867 1.22993 1.05519 0.90788 0.96630 1.43388 1.48244 1.15133 1.02857 0.70787 1.73546 1.17700 1.10202 1.08083 0.93006 0.92025 0.92227 0.90003 0.91909 0.95064 0.93883 0.92801 0.92925 0.88738 0.82868 0.94997 0.90622 0.89949 0.91059 0.91145 0.90933 0.75645 0.81846 0.79644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.11 1.69 5.93 -4.04 -0.02 1.67 16 3 N -0.60 -12.62 2.46 -175.06 -0.43 -13.05 16 4 C 0.25 6.48 5.16 -5.20 -0.03 6.46 16 5 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 9 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 13 C 0.50 10.46 7.71 -10.99 -0.08 10.37 16 14 O -0.53 -13.40 15.78 5.55 0.09 -13.32 16 15 C 0.04 0.61 4.72 -4.98 -0.02 0.59 16 16 N -0.67 -9.41 6.12 -115.06 -0.70 -10.11 16 17 C 0.06 0.65 5.69 -3.83 -0.02 0.62 16 18 C -0.13 -1.14 5.59 -26.73 -0.15 -1.29 16 19 C 0.12 1.07 5.67 -4.04 -0.02 1.04 16 20 N -0.72 -6.61 5.55 -61.29 -0.34 -6.95 16 21 C 0.60 6.78 7.82 -12.39 -0.10 6.68 16 22 O -0.53 -7.55 16.93 5.30 0.09 -7.46 16 23 C -0.01 -0.14 7.13 -82.77 -0.59 -0.73 16 24 C -0.18 -1.34 10.81 -39.36 -0.43 -1.77 16 25 C -0.02 -0.06 12.02 -17.17 -0.21 -0.27 16 26 N -0.38 -1.76 6.83 30.47 0.21 -1.55 16 27 H 0.45 0.39 8.96 -190.44 -1.71 -1.32 16 28 N -0.26 -2.09 11.92 33.42 0.40 -1.69 16 29 H 0.05 0.66 7.22 -51.93 -0.38 0.29 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 33 H 0.06 0.82 6.44 -51.93 -0.33 0.49 16 34 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 35 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.05 0.69 7.40 -51.93 -0.38 0.31 16 38 H 0.09 1.23 7.19 -51.93 -0.37 0.86 16 39 H 0.35 5.19 8.43 -39.29 -0.33 4.86 16 40 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.41 3.22 8.20 -40.82 -0.33 2.89 16 47 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 48 H 0.19 0.03 8.06 -52.48 -0.42 -0.39 16 LS Contribution 407.86 15.07 6.15 6.15 Total: -1.00 -37.87 407.86 -9.38 -47.25 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -8.84 Total: 1.93 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -1.71 Total: 7.85 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.13 Total: -59.32 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: 0.18 Total: -20.77 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -37.87 -9.38 -47.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154887282.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.479 kcal (2) G-P(sol) polarization free energy of solvation -37.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds