Wall clock time and date at job start Tue Mar 31 2020 20:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 109.47200 * 2 1 4 4 C 1.46494 * 120.00253 * 270.00380 * 3 2 1 5 5 C 1.50704 * 109.46918 * 269.99962 * 4 3 2 6 6 H 1.08000 * 119.99635 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00065 * 179.97438 * 5 4 3 8 8 N 1.31520 * 120.00240 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00048 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47238 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47253 * 120.00076 * 9 7 5 12 12 H 1.48499 * 109.47377 * 239.99846 * 9 7 5 13 13 C 1.34778 * 119.99637 * 89.99916 * 3 2 1 14 14 O 1.21283 * 119.99630 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00234 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47173 * 179.97438 * 15 13 3 17 17 C 1.46901 * 111.00370 * 179.97438 * 16 15 13 18 18 C 1.52996 * 109.47243 * 179.97438 * 17 16 15 19 19 C 1.53005 * 109.46649 * 180.02562 * 18 17 16 20 20 N 1.46505 * 109.46534 * 180.02562 * 19 18 17 21 21 C 1.34777 * 119.99718 * 180.02562 * 20 19 18 22 22 O 1.21579 * 120.00077 * 359.97438 * 21 20 19 23 23 C 1.47706 * 120.00293 * 179.97438 * 21 20 19 24 24 C 1.41500 * 126.52096 * 179.97438 * 23 21 20 25 25 C 1.35365 * 105.50387 * 180.02562 * 24 23 21 26 26 N 1.35033 * 107.23063 * 359.97438 * 25 24 23 27 27 H 0.97001 * 124.89001 * 180.02562 * 26 25 24 28 28 N 1.28474 * 110.22757 * 0.02562 * 26 25 24 29 29 H 1.09001 * 109.47121 * 299.99889 * 1 2 3 30 30 H 1.08995 * 109.46936 * 59.99909 * 1 2 3 31 31 H 1.08993 * 109.46980 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47121 * 240.00111 * 2 1 3 33 33 H 1.08995 * 109.46936 * 120.00091 * 2 1 3 34 34 H 1.09004 * 109.47394 * 29.99471 * 4 3 2 35 35 H 1.09000 * 109.47340 * 149.99902 * 4 3 2 36 36 H 0.96991 * 119.99933 * 179.97438 * 8 7 5 37 37 H 1.08993 * 109.47261 * 60.00203 * 15 13 3 38 38 H 1.09004 * 109.46915 * 299.99556 * 15 13 3 39 39 H 1.00898 * 111.00140 * 303.95635 * 16 15 13 40 40 H 1.09002 * 109.46534 * 59.99748 * 17 16 15 41 41 H 1.08997 * 109.47242 * 300.00617 * 17 16 15 42 42 H 1.09000 * 109.47036 * 60.00263 * 18 17 16 43 43 H 1.09000 * 109.47324 * 299.99729 * 18 17 16 44 44 H 1.09000 * 109.47384 * 60.00234 * 19 18 17 45 45 H 1.08998 * 109.47196 * 299.99391 * 19 18 17 46 46 H 0.96995 * 120.00601 * 359.97438 * 20 19 18 47 47 H 1.08000 * 127.24928 * 0.02691 * 24 23 21 48 48 H 1.08004 * 126.38789 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1491 2.3897 -2.8779 8 7 3.3488 3.1250 -3.6185 9 14 5.9135 2.0967 -3.4168 10 1 6.6015 1.2425 -2.4158 11 1 5.9215 1.4172 -4.7372 12 1 6.6205 3.3981 -3.5257 13 6 2.2430 2.0165 1.1673 14 8 2.6469 3.1601 1.1673 15 6 1.9924 1.3059 2.4723 16 7 2.3110 2.2057 3.5889 17 6 2.0775 1.5455 4.8803 18 6 2.4203 2.5114 6.0162 19 6 2.1776 1.8234 7.3612 20 7 2.5053 2.7486 8.4489 21 6 2.3679 2.3567 9.7311 22 8 1.9716 1.2357 9.9851 23 6 2.6987 3.2892 10.8279 24 6 2.6059 3.0247 12.2148 25 6 3.0085 4.1624 12.8279 26 7 3.3222 5.0493 11.8591 27 1 3.6418 5.9517 12.0154 28 7 3.1363 4.5260 10.7007 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.5817 1.6878 -2.0284 35 1 2.0956 3.1411 -1.1383 36 1 3.6749 3.5155 -4.4443 37 1 2.6229 0.4187 2.5299 38 1 0.9444 1.0114 2.5302 39 1 3.2593 2.5438 3.5215 40 1 2.7080 0.6595 4.9545 41 1 1.0301 1.2533 4.9548 42 1 1.7901 3.3977 5.9421 43 1 3.4679 2.8031 5.9415 44 1 2.8081 0.9373 7.4350 45 1 1.1302 1.5314 7.4362 46 1 2.8217 3.6428 8.2464 47 1 2.2821 2.1081 12.6853 48 1 3.0685 4.3295 13.8932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154887282.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:16 Heat of formation + Delta-G solvation = -29.553552 kcal Electronic energy + Delta-G solvation = -27519.187004 eV Core-core repulsion = 23416.433005 eV Total energy + Delta-G solvation = -4102.754000 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.57095 -40.71675 -40.46055 -37.72972 -36.87795 -35.87013 -34.88690 -33.20178 -32.30372 -31.63913 -31.45924 -29.59634 -27.83259 -25.91192 -24.68385 -24.11990 -23.46977 -22.66024 -22.50246 -21.04783 -19.89181 -19.46259 -18.61855 -18.06241 -17.90706 -17.39478 -17.17083 -16.94714 -16.79768 -16.33734 -16.23282 -15.49416 -15.34936 -14.96122 -14.76765 -14.69916 -14.62659 -14.59279 -14.22513 -13.99738 -13.62028 -13.46490 -13.29591 -13.14998 -12.98662 -12.72932 -12.65813 -12.48200 -12.42247 -12.14597 -11.99564 -11.92003 -11.80018 -11.67555 -11.34478 -10.64878 -10.54938 -10.53131 -10.16455 -10.08363 -9.41529 -9.35287 -8.21919 -6.37097 0.50123 1.23421 1.35967 1.38374 1.50111 1.88615 1.89181 2.22868 2.33181 2.33867 2.44348 3.07236 3.24175 3.43754 3.75174 3.99925 4.02736 4.11678 4.12483 4.17520 4.29750 4.38126 4.40946 4.50443 4.58005 4.67363 4.70072 4.75816 4.77550 4.80992 4.95168 5.01278 5.07183 5.15043 5.19362 5.24073 5.32509 5.40088 5.41371 5.59212 5.85707 5.99004 6.07661 6.14250 6.32931 6.42691 6.71703 6.85435 6.86865 7.11892 7.29393 7.54167 8.85204 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018400 B = 0.001562 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.369524 B =17927.125520 C =18885.180324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.969 3.031 10 H -0.266 1.266 11 H -0.269 1.269 12 H -0.282 1.282 13 C 0.493 3.507 14 O -0.588 6.588 15 C 0.058 3.942 16 N -0.692 5.692 17 C 0.066 3.934 18 C -0.119 4.119 19 C 0.126 3.874 20 N -0.709 5.709 21 C 0.598 3.402 22 O -0.572 6.572 23 C -0.045 4.045 24 C -0.210 4.210 25 C 0.014 3.986 26 N -0.367 5.367 27 H 0.464 0.536 28 N -0.275 5.275 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.020 0.980 35 H -0.006 1.006 36 H 0.267 0.733 37 H 0.080 0.920 38 H 0.121 0.879 39 H 0.344 0.656 40 H 0.047 0.953 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.414 0.586 47 H 0.163 0.837 48 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.483 -2.560 33.059 33.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.794 3.206 10 H -0.191 1.191 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.281 3.719 14 O -0.468 6.468 15 C -0.074 4.074 16 N -0.324 5.324 17 C -0.063 4.063 18 C -0.157 4.157 19 C 0.002 3.998 20 N -0.360 5.360 21 C 0.384 3.616 22 O -0.450 6.450 23 C -0.205 4.205 24 C -0.238 4.238 25 C -0.131 4.131 26 N -0.084 5.084 27 H 0.313 0.687 28 N -0.113 5.113 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.038 0.962 35 H 0.012 0.988 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.138 0.862 39 H 0.163 0.837 40 H 0.065 0.935 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.251 0.749 47 H 0.181 0.819 48 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -2.932 -1.631 32.203 32.377 hybrid contribution 1.577 -0.046 -0.362 1.619 sum -1.355 -1.677 31.841 31.914 Atomic orbital electron populations 1.22157 0.94659 1.03469 1.01654 1.21748 0.95262 0.81341 1.03916 1.48286 1.64110 1.15102 1.06195 1.18671 0.95228 0.91456 0.80544 1.21759 0.97901 1.31920 1.06495 0.92784 1.25881 1.02446 0.94491 0.96453 1.70066 1.37707 1.34297 1.14795 0.85345 0.78943 0.77970 0.78389 1.19055 1.19442 1.20818 1.21321 0.77330 0.86674 0.86564 1.90635 1.47724 1.20483 1.87938 1.21810 1.04340 0.94122 0.87095 1.60083 1.32399 1.38603 1.01321 1.21883 1.02471 0.95218 0.86691 1.21610 1.02994 0.99382 0.91702 1.21314 1.01418 0.92351 0.84730 1.45834 1.66791 1.18516 1.04864 1.17193 0.76879 0.85347 0.82219 1.90772 1.48424 1.21390 1.84396 1.21926 1.10161 0.93020 0.95391 1.22076 1.08641 1.01716 0.91385 1.23590 1.02289 0.89006 0.98218 1.43532 1.46769 1.15914 1.02169 0.68715 1.73471 1.18285 1.09776 1.09770 0.92071 0.94479 0.88599 0.91080 0.88067 0.96198 0.98759 0.92450 0.90269 0.86160 0.83714 0.93516 0.89530 0.90497 0.90865 0.91260 0.91121 0.74908 0.81939 0.75109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 10.24 71.98 0.74 -3.24 16 2 C 0.10 3.00 5.93 86.38 0.51 3.51 16 3 N -0.61 -25.74 2.46 -826.14 -2.03 -27.77 16 4 C 0.26 14.44 5.16 85.64 0.44 14.89 16 5 C -0.54 -31.66 9.39 25.60 0.24 -31.42 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.36 5.46 84.65 0.46 0.82 16 8 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 9 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 C 0.49 20.53 7.71 87.66 0.68 21.21 16 14 O -0.59 -30.92 15.78 -3.04 -0.05 -30.97 16 15 C 0.06 1.59 4.72 85.56 0.40 2.00 16 16 N -0.69 -18.35 6.12 -517.94 -3.17 -21.53 16 17 C 0.07 1.19 5.69 86.30 0.49 1.68 16 18 C -0.12 -1.94 5.59 30.59 0.17 -1.76 16 19 C 0.13 2.13 5.67 86.38 0.49 2.62 16 20 N -0.71 -13.08 5.55 -466.08 -2.59 -15.67 16 21 C 0.60 13.77 7.82 86.75 0.68 14.45 16 22 O -0.57 -16.76 16.93 -3.97 -0.07 -16.83 16 23 C -0.05 -0.87 7.13 42.46 0.30 -0.57 16 24 C -0.21 -2.99 10.81 22.41 0.24 -2.75 16 25 C 0.01 0.08 12.02 83.54 1.00 1.08 16 26 N -0.37 -2.57 6.83 -57.51 -0.39 -2.96 16 27 H 0.46 -0.44 8.96 -219.99 -1.97 -2.42 16 28 N -0.27 -4.20 11.92 -48.18 -0.57 -4.77 16 29 H 0.06 1.40 7.22 -2.39 -0.02 1.38 16 30 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 33 H 0.10 2.28 6.44 -2.39 -0.02 2.26 16 34 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 35 H -0.01 -0.37 7.42 -2.39 -0.02 -0.38 16 36 H 0.27 15.27 8.31 -92.72 -0.77 14.50 16 37 H 0.08 1.79 7.40 -2.39 -0.02 1.77 16 38 H 0.12 2.70 7.19 -2.38 -0.02 2.68 16 39 H 0.34 9.99 8.43 -89.70 -0.76 9.24 16 40 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.41 6.51 8.20 -92.71 -0.76 5.75 16 47 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 48 H 0.23 -0.97 8.06 -2.91 -0.02 -0.99 16 Total: -1.00 -87.86 407.86 -2.19 -90.05 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -2.49 Total: 17.25 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: 6.85 Total: 22.52 kcal Atomic # 7 Polarization: -120.91 SS G_CDS: -8.47 Total: -129.38 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -0.12 Total: -47.80 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -87.86 -2.19 -90.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154887282.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.496 kcal (2) G-P(sol) polarization free energy of solvation -87.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds