Wall clock time and date at job start Tue Mar 31 2020 20:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46500 * 109.47341 * 2 1 4 4 C 1.46499 * 120.00234 * 269.99827 * 3 2 1 5 5 C 1.50702 * 109.47279 * 270.00059 * 4 3 2 6 6 H 1.08001 * 119.99881 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99986 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00145 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99719 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47361 * 60.00068 * 9 7 5 11 11 H 1.48503 * 109.47019 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47209 * 299.99914 * 9 7 5 13 13 C 1.34782 * 120.00158 * 89.99432 * 3 2 1 14 14 O 1.21277 * 119.99754 * 179.97438 * 13 3 2 15 15 C 1.50699 * 119.99713 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.46823 * 179.97438 * 15 13 3 17 17 C 1.46906 * 111.00123 * 180.02562 * 16 15 13 18 18 C 1.52992 * 109.47247 * 180.02562 * 17 16 15 19 19 C 1.53005 * 109.47221 * 179.97438 * 18 17 16 20 20 N 1.46499 * 109.47447 * 179.97438 * 19 18 17 21 21 C 1.34773 * 120.00115 * 179.97438 * 20 19 18 22 22 O 1.21606 * 119.99834 * 0.02562 * 21 20 19 23 23 C 1.47425 * 119.99850 * 180.02562 * 21 20 19 24 24 C 1.41288 * 126.41671 * 0.04693 * 23 21 20 25 25 N 1.30449 * 108.02633 * 179.70252 * 24 23 21 26 26 N 1.39939 * 108.89553 * 0.40857 * 25 24 23 27 27 H 0.97001 * 125.75870 * 179.85304 * 26 25 24 28 28 C 1.34266 * 108.48792 * 359.57838 * 26 25 24 29 29 H 1.09000 * 109.47109 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47876 * 300.00306 * 1 2 3 31 31 H 1.09004 * 109.47332 * 60.00179 * 1 2 3 32 32 H 1.08998 * 109.47876 * 239.99694 * 2 1 3 33 33 H 1.09004 * 109.47332 * 119.99820 * 2 1 3 34 34 H 1.09007 * 109.46519 * 29.99727 * 4 3 2 35 35 H 1.08999 * 109.47695 * 149.99331 * 4 3 2 36 36 H 0.96998 * 119.99805 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.47348 * 59.99733 * 15 13 3 38 38 H 1.08994 * 109.47364 * 299.99484 * 15 13 3 39 39 H 1.00904 * 111.00009 * 303.95098 * 16 15 13 40 40 H 1.08995 * 109.46745 * 59.99568 * 17 16 15 41 41 H 1.08998 * 109.46762 * 300.00016 * 17 16 15 42 42 H 1.09001 * 109.47885 * 59.99649 * 18 17 16 43 43 H 1.09007 * 109.47023 * 299.99394 * 18 17 16 44 44 H 1.09003 * 109.47033 * 60.00060 * 19 18 17 45 45 H 1.08998 * 109.46795 * 299.99925 * 19 18 17 46 46 H 0.97000 * 119.99689 * 0.02562 * 20 19 18 47 47 H 1.08001 * 125.98863 * 359.97438 * 24 23 21 48 48 H 1.08001 * 126.29046 * 180.22045 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9136 2.0966 -3.4167 10 1 6.1418 0.6399 -3.5934 11 1 6.1611 2.7966 -4.7028 12 1 6.8407 2.6209 -2.3819 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1671 15 6 1.9921 1.3060 2.4723 16 7 2.3107 2.2059 3.5888 17 6 2.0782 1.5454 4.8802 18 6 2.4197 2.5117 6.0161 19 6 2.1770 1.8240 7.3612 20 7 2.5044 2.7491 8.4489 21 6 2.3660 2.3577 9.7311 22 8 1.9696 1.2364 9.9851 23 6 2.6950 3.2888 10.8256 24 6 3.1627 4.6148 10.6867 25 7 3.3314 5.1106 11.8814 26 7 2.9937 4.1369 12.8280 27 1 3.0314 4.2455 13.7912 28 6 2.6029 3.0288 12.1782 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3635 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0955 3.1410 -1.1385 36 1 3.6748 3.5148 -4.4448 37 1 2.6225 0.4188 2.5299 38 1 0.9443 1.0116 2.5302 39 1 3.2590 2.5440 3.5215 40 1 2.7093 0.6597 4.9540 41 1 1.0310 1.2526 4.9552 42 1 1.7883 3.3972 5.9421 43 1 3.4669 2.8049 5.9413 44 1 2.8081 0.9384 7.4355 45 1 1.1297 1.5311 7.4357 46 1 2.8203 3.6435 8.2462 47 1 3.3442 5.1294 9.7547 48 1 2.2769 2.1039 12.6306 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155017011.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:27 Heat of formation + Delta-G solvation = -2.192228 kcal Electronic energy + Delta-G solvation = -27499.954450 eV Core-core repulsion = 23398.386926 eV Total energy + Delta-G solvation = -4101.567524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.83177 -39.49548 -39.10192 -36.74350 -35.32182 -34.83519 -32.82747 -32.51431 -31.55604 -30.56628 -30.05827 -27.99910 -26.33170 -24.48175 -23.00840 -22.78821 -22.50379 -22.02308 -21.78667 -20.35352 -19.07938 -18.31686 -16.68054 -16.53219 -16.50141 -16.25196 -16.04219 -15.73366 -15.53103 -15.13792 -15.11254 -14.47466 -14.33041 -14.27349 -13.73243 -13.56246 -13.40957 -13.37368 -13.28024 -12.63422 -12.39480 -12.04352 -11.95144 -11.84368 -11.72461 -11.63082 -11.42745 -11.16112 -11.09941 -10.90848 -10.71138 -10.50785 -10.41786 -10.21753 -10.11824 -9.63492 -9.51131 -9.20518 -8.90178 -8.42023 -8.33193 -7.62825 -6.02871 -4.07770 1.04061 1.66928 2.15126 2.91849 3.10874 3.31961 3.36633 3.38321 3.48042 3.76225 4.11089 4.29614 4.31136 4.46527 4.62103 4.73040 4.80760 4.90714 4.93658 5.10588 5.19190 5.27957 5.31241 5.33329 5.41260 5.47344 5.54560 5.55322 5.68202 5.79502 5.82949 5.88417 5.93665 6.04888 6.15037 6.25045 6.50206 6.51879 6.86555 6.91112 7.14605 7.22567 7.40193 7.48359 7.58279 7.93774 7.96278 8.25486 8.46632 8.91929 9.14481 9.57300 11.05042 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018415 B = 0.001558 C = 0.001479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.095877 B =17973.016501 C =18928.734022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.504 3.496 14 O -0.529 6.529 15 C 0.041 3.959 16 N -0.673 5.673 17 C 0.064 3.936 18 C -0.131 4.131 19 C 0.123 3.877 20 N -0.725 5.725 21 C 0.594 3.406 22 O -0.551 6.551 23 C -0.295 4.295 24 C 0.085 3.915 25 N -0.294 5.294 26 N -0.464 5.464 27 H 0.446 0.554 28 C 0.135 3.865 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.352 0.648 40 H 0.032 0.968 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.401 0.599 47 H 0.192 0.808 48 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.973 -3.719 29.424 29.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.566 4.566 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.290 3.710 14 O -0.406 6.406 15 C -0.091 4.091 16 N -0.306 5.306 17 C -0.066 4.066 18 C -0.169 4.169 19 C -0.001 4.001 20 N -0.376 5.376 21 C 0.382 3.618 22 O -0.430 6.430 23 C -0.310 4.310 24 C -0.103 4.103 25 N -0.115 5.115 26 N -0.169 5.169 27 H 0.290 0.710 28 C -0.019 4.019 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.113 0.887 39 H 0.171 0.829 40 H 0.050 0.950 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.235 0.765 47 H 0.209 0.791 48 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -4.302 -2.458 30.021 30.427 hybrid contribution 1.609 -1.095 -0.510 2.012 sum -2.692 -3.553 29.511 29.846 Atomic orbital electron populations 1.22223 0.96797 1.01354 1.02400 1.21404 0.93526 0.84300 1.02550 1.48255 1.64025 1.13194 1.07719 1.19242 0.96117 0.93673 0.78129 1.21404 0.96989 1.31963 1.06257 0.92617 1.24931 0.97799 0.94941 0.96406 1.69923 1.35688 1.33398 1.14298 0.86567 0.84862 0.78193 0.77823 1.20308 1.21180 1.20227 1.20181 0.78894 0.87074 0.84897 1.90670 1.45179 1.17760 1.86950 1.21899 1.02343 0.94328 0.90535 1.60102 1.32709 1.37717 1.00086 1.21821 1.01469 0.94869 0.88486 1.21753 1.02933 0.99881 0.92326 1.21305 1.01433 0.92470 0.84872 1.45745 1.68682 1.17809 1.05394 1.17202 0.76822 0.85919 0.81874 1.90787 1.47305 1.20779 1.84107 1.20323 1.20134 0.97050 0.93511 1.24153 0.96309 0.93007 0.96872 1.77206 1.23191 1.13098 0.98017 1.46279 1.51186 1.09554 1.09873 0.70964 1.23090 0.94090 0.92311 0.92363 0.92234 0.93008 0.92020 0.90003 0.91919 0.95087 0.93892 0.92683 0.92933 0.88750 0.82884 0.95026 0.90668 0.89988 0.91087 0.91367 0.91142 0.76485 0.79121 0.79072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.15 0.38 -1.85 16 2 C 0.11 1.67 5.93 -4.05 -0.02 1.65 16 3 N -0.60 -12.48 2.46 -175.06 -0.43 -12.91 16 4 C 0.25 6.46 5.16 -5.19 -0.03 6.43 16 5 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 9 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 C 0.50 10.31 7.71 -10.98 -0.08 10.23 16 14 O -0.53 -13.25 15.78 5.56 0.09 -13.16 16 15 C 0.04 0.60 4.72 -4.98 -0.02 0.57 16 16 N -0.67 -9.08 6.13 -115.07 -0.70 -9.79 16 17 C 0.06 0.61 5.68 -3.82 -0.02 0.58 16 18 C -0.13 -1.02 5.59 -26.73 -0.15 -1.17 16 19 C 0.12 0.97 5.67 -4.04 -0.02 0.95 16 20 N -0.73 -5.36 5.55 -61.38 -0.34 -5.71 16 21 C 0.59 5.64 7.81 -12.52 -0.10 5.55 16 22 O -0.55 -7.16 16.90 5.27 0.09 -7.08 16 23 C -0.30 -2.21 6.13 -105.07 -0.64 -2.86 16 24 C 0.09 0.55 11.50 -16.98 -0.20 0.36 16 25 N -0.29 -2.21 12.63 30.86 0.39 -1.82 16 26 N -0.46 -2.24 7.29 30.85 0.22 -2.02 16 27 H 0.45 0.62 8.96 -182.72 -1.64 -1.02 16 28 C 0.13 0.75 11.82 -16.56 -0.20 0.56 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.65 7.22 -51.93 -0.38 0.28 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.34 8.07 -51.93 -0.42 0.93 16 33 H 0.06 0.81 6.44 -51.93 -0.33 0.47 16 34 H 0.03 0.82 8.07 -51.92 -0.42 0.40 16 35 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.05 0.68 7.40 -51.93 -0.38 0.29 16 38 H 0.09 1.20 7.19 -51.93 -0.37 0.83 16 39 H 0.35 5.01 8.43 -39.29 -0.33 4.68 16 40 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.40 1.98 7.43 -40.82 -0.30 1.68 16 47 H 0.19 0.66 7.50 -52.49 -0.39 0.27 16 48 H 0.19 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 407.15 15.07 6.14 6.14 Total: -1.00 -38.21 407.15 -9.07 -47.28 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -8.71 Total: 0.70 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -1.53 Total: 7.41 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.12 Total: -58.07 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: 0.18 Total: -20.23 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -38.21 -9.07 -47.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155017011.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.085 kcal (2) G-P(sol) polarization free energy of solvation -38.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds