Wall clock time and date at job start Tue Mar 31 2020 20:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46500 * 109.47341 * 2 1 4 4 C 1.46499 * 120.00234 * 269.99827 * 3 2 1 5 5 C 1.50702 * 109.47279 * 270.00059 * 4 3 2 6 6 H 1.08001 * 119.99881 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99986 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00145 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99719 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47361 * 60.00068 * 9 7 5 11 11 H 1.48503 * 109.47019 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47209 * 299.99914 * 9 7 5 13 13 C 1.34782 * 120.00158 * 89.99432 * 3 2 1 14 14 O 1.21277 * 119.99754 * 179.97438 * 13 3 2 15 15 C 1.50699 * 119.99713 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.46823 * 179.97438 * 15 13 3 17 17 C 1.46906 * 111.00123 * 180.02562 * 16 15 13 18 18 C 1.52992 * 109.47247 * 180.02562 * 17 16 15 19 19 C 1.53005 * 109.47221 * 179.97438 * 18 17 16 20 20 N 1.46499 * 109.47447 * 179.97438 * 19 18 17 21 21 C 1.34773 * 120.00115 * 179.97438 * 20 19 18 22 22 O 1.21606 * 119.99834 * 0.02562 * 21 20 19 23 23 C 1.47425 * 119.99850 * 180.02562 * 21 20 19 24 24 C 1.41288 * 126.41671 * 0.04693 * 23 21 20 25 25 N 1.30449 * 108.02633 * 179.70252 * 24 23 21 26 26 N 1.39939 * 108.89553 * 0.40857 * 25 24 23 27 27 H 0.97001 * 125.75870 * 179.85304 * 26 25 24 28 28 C 1.34266 * 108.48792 * 359.57838 * 26 25 24 29 29 H 1.09000 * 109.47109 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47876 * 300.00306 * 1 2 3 31 31 H 1.09004 * 109.47332 * 60.00179 * 1 2 3 32 32 H 1.08998 * 109.47876 * 239.99694 * 2 1 3 33 33 H 1.09004 * 109.47332 * 119.99820 * 2 1 3 34 34 H 1.09007 * 109.46519 * 29.99727 * 4 3 2 35 35 H 1.08999 * 109.47695 * 149.99331 * 4 3 2 36 36 H 0.96998 * 119.99805 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.47348 * 59.99733 * 15 13 3 38 38 H 1.08994 * 109.47364 * 299.99484 * 15 13 3 39 39 H 1.00904 * 111.00009 * 303.95098 * 16 15 13 40 40 H 1.08995 * 109.46745 * 59.99568 * 17 16 15 41 41 H 1.08998 * 109.46762 * 300.00016 * 17 16 15 42 42 H 1.09001 * 109.47885 * 59.99649 * 18 17 16 43 43 H 1.09007 * 109.47023 * 299.99394 * 18 17 16 44 44 H 1.09003 * 109.47033 * 60.00060 * 19 18 17 45 45 H 1.08998 * 109.46795 * 299.99925 * 19 18 17 46 46 H 0.97000 * 119.99689 * 0.02562 * 20 19 18 47 47 H 1.08001 * 125.98863 * 359.97438 * 24 23 21 48 48 H 1.08001 * 126.29046 * 180.22045 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9136 2.0966 -3.4167 10 1 6.1418 0.6399 -3.5934 11 1 6.1611 2.7966 -4.7028 12 1 6.8407 2.6209 -2.3819 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1671 15 6 1.9921 1.3060 2.4723 16 7 2.3107 2.2059 3.5888 17 6 2.0782 1.5454 4.8802 18 6 2.4197 2.5117 6.0161 19 6 2.1770 1.8240 7.3612 20 7 2.5044 2.7491 8.4489 21 6 2.3660 2.3577 9.7311 22 8 1.9696 1.2364 9.9851 23 6 2.6950 3.2888 10.8256 24 6 3.1627 4.6148 10.6867 25 7 3.3314 5.1106 11.8814 26 7 2.9937 4.1369 12.8280 27 1 3.0314 4.2455 13.7912 28 6 2.6029 3.0288 12.1782 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3635 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0955 3.1410 -1.1385 36 1 3.6748 3.5148 -4.4448 37 1 2.6225 0.4188 2.5299 38 1 0.9443 1.0116 2.5302 39 1 3.2590 2.5440 3.5215 40 1 2.7093 0.6597 4.9540 41 1 1.0310 1.2526 4.9552 42 1 1.7883 3.3972 5.9421 43 1 3.4669 2.8049 5.9413 44 1 2.8081 0.9384 7.4355 45 1 1.1297 1.5311 7.4357 46 1 2.8203 3.6435 8.2462 47 1 3.3442 5.1294 9.7547 48 1 2.2769 2.1039 12.6306 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155017011.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:25 Heat of formation + Delta-G solvation = -33.042089 kcal Electronic energy + Delta-G solvation = -27501.292200 eV Core-core repulsion = 23398.386926 eV Total energy + Delta-G solvation = -4102.905274 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.30405 -40.69485 -40.16405 -37.66680 -36.85366 -35.77917 -34.87196 -33.12291 -32.26956 -31.57719 -31.12495 -29.53475 -27.70723 -25.57593 -24.54743 -23.81413 -23.18678 -22.97582 -22.45900 -20.93767 -19.92114 -19.51808 -18.59822 -17.90785 -17.38609 -17.18148 -17.01994 -16.85664 -16.52592 -16.31791 -15.87061 -15.53510 -15.31795 -15.13983 -14.91263 -14.64828 -14.62566 -14.47153 -14.17904 -13.82489 -13.59032 -13.43569 -13.26751 -13.13823 -12.97238 -12.67710 -12.61803 -12.45125 -12.38258 -12.18386 -12.12048 -11.88624 -11.76359 -11.70462 -10.95050 -10.86608 -10.62760 -10.53046 -10.16767 -9.73725 -9.40099 -9.33072 -8.20416 -6.35735 0.56041 1.15620 1.37360 1.41660 1.48964 1.78807 1.90249 2.23193 2.36759 2.47262 2.47992 3.08657 3.28614 3.66993 3.76838 3.91865 4.07477 4.10589 4.13444 4.18414 4.24933 4.40223 4.41509 4.42598 4.51944 4.63052 4.69127 4.72182 4.77285 4.85636 4.96352 5.02216 5.08216 5.21772 5.24483 5.27830 5.34038 5.42204 5.52687 5.60030 5.87115 6.01329 6.08983 6.21992 6.36106 6.46358 6.66206 6.72572 6.86928 7.30640 7.31602 7.55669 8.86224 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018415 B = 0.001558 C = 0.001479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.095877 B =17973.016501 C =18928.734022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.968 3.032 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.493 3.507 14 O -0.587 6.587 15 C 0.058 3.942 16 N -0.691 5.691 17 C 0.065 3.935 18 C -0.119 4.119 19 C 0.129 3.871 20 N -0.717 5.717 21 C 0.593 3.407 22 O -0.593 6.593 23 C -0.321 4.321 24 C 0.088 3.912 25 N -0.325 5.325 26 N -0.452 5.452 27 H 0.459 0.541 28 C 0.145 3.855 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.019 0.981 35 H -0.006 1.006 36 H 0.267 0.733 37 H 0.079 0.921 38 H 0.120 0.880 39 H 0.345 0.655 40 H 0.045 0.955 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.413 0.587 47 H 0.214 0.786 48 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.493 -5.440 31.117 31.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.185 1.185 11 H -0.204 1.204 12 H -0.203 1.203 13 C 0.281 3.719 14 O -0.467 6.467 15 C -0.074 4.074 16 N -0.323 5.323 17 C -0.064 4.064 18 C -0.157 4.157 19 C 0.005 3.995 20 N -0.368 5.368 21 C 0.382 3.618 22 O -0.475 6.475 23 C -0.336 4.336 24 C -0.100 4.100 25 N -0.146 5.146 26 N -0.158 5.158 27 H 0.307 0.693 28 C -0.009 4.009 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.037 0.963 35 H 0.012 0.988 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.138 0.862 39 H 0.163 0.837 40 H 0.063 0.937 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.250 0.750 47 H 0.231 0.769 48 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -3.838 -4.195 31.746 32.251 hybrid contribution 1.410 -0.546 -0.988 1.806 sum -2.428 -4.741 30.758 31.216 Atomic orbital electron populations 1.22156 0.94679 1.03451 1.01658 1.21740 0.95247 0.81364 1.03894 1.48289 1.64131 1.15087 1.06215 1.18657 0.95181 0.91445 0.80541 1.21705 0.97926 1.32075 1.06560 0.92755 1.25876 1.02425 0.94475 0.96444 1.70053 1.37825 1.34198 1.14733 0.85462 0.78988 0.78978 0.77332 1.18474 1.20445 1.20256 1.21327 0.77324 0.86672 0.86558 1.90634 1.47676 1.20496 1.87932 1.21806 1.04291 0.94140 0.87143 1.60110 1.32391 1.38514 1.01302 1.21898 1.02325 0.95345 0.86858 1.21614 1.03118 0.99320 0.91632 1.21194 1.01002 0.92398 0.84911 1.45678 1.67917 1.18327 1.04848 1.17476 0.76118 0.85597 0.82634 1.90757 1.49512 1.22508 1.84740 1.20328 1.22126 0.97405 0.93775 1.24524 0.95287 0.92629 0.97535 1.77163 1.24421 1.14340 0.98700 1.46300 1.50178 1.08860 1.10484 0.69266 1.23460 0.92549 0.92904 0.92033 0.88631 0.92041 0.94502 0.91137 0.88051 0.96269 0.98764 0.92459 0.90330 0.86234 0.83692 0.93721 0.89753 0.90291 0.90645 0.91825 0.91673 0.75043 0.76934 0.76976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 10.24 71.98 0.74 -3.17 16 2 C 0.10 2.95 5.93 86.38 0.51 3.47 16 3 N -0.61 -25.41 2.46 -826.16 -2.03 -27.44 16 4 C 0.26 14.37 5.16 85.63 0.44 14.81 16 5 C -0.54 -31.52 9.39 25.60 0.24 -31.28 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.39 5.46 84.65 0.46 0.85 16 8 N -0.93 -56.65 13.29 21.45 0.28 -56.36 16 9 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 10 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 13 C 0.49 20.18 7.71 87.66 0.68 20.85 16 14 O -0.59 -30.45 15.78 -3.02 -0.05 -30.50 16 15 C 0.06 1.54 4.72 85.56 0.40 1.94 16 16 N -0.69 -17.48 6.13 -517.96 -3.17 -20.65 16 17 C 0.06 1.07 5.68 86.30 0.49 1.56 16 18 C -0.12 -1.64 5.59 30.59 0.17 -1.47 16 19 C 0.13 1.85 5.67 86.38 0.49 2.34 16 20 N -0.72 -9.76 5.55 -466.37 -2.59 -12.35 16 21 C 0.59 10.81 7.81 86.66 0.68 11.49 16 22 O -0.59 -15.22 16.90 -4.05 -0.07 -15.29 16 23 C -0.32 -4.49 6.13 -20.15 -0.12 -4.61 16 24 C 0.09 1.04 11.50 85.65 0.99 2.02 16 25 N -0.33 -4.49 12.63 -56.27 -0.71 -5.20 16 26 N -0.45 -3.72 7.29 -56.31 -0.41 -4.13 16 27 H 0.46 0.57 8.96 -213.42 -1.91 -1.34 16 28 C 0.15 1.42 11.82 84.27 1.00 2.41 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.06 1.37 7.22 -2.39 -0.02 1.35 16 31 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 33 H 0.10 2.23 6.44 -2.38 -0.02 2.21 16 34 H 0.02 1.07 8.07 -2.38 -0.02 1.05 16 35 H -0.01 -0.37 7.42 -2.39 -0.02 -0.38 16 36 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 37 H 0.08 1.71 7.40 -2.39 -0.02 1.70 16 38 H 0.12 2.60 7.19 -2.39 -0.02 2.58 16 39 H 0.34 9.54 8.43 -89.69 -0.76 8.78 16 40 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 44 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.41 3.48 7.43 -92.71 -0.69 2.79 16 47 H 0.21 1.14 7.50 -2.91 -0.02 1.12 16 48 H 0.21 1.02 8.06 -2.91 -0.02 1.00 16 Total: -1.00 -87.03 407.15 -1.91 -88.94 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -2.35 Total: 14.79 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: 7.16 Total: 21.24 kcal Atomic # 7 Polarization: -117.51 SS G_CDS: -8.63 Total: -126.14 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: -0.12 Total: -45.79 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -87.03 -1.91 -88.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155017011.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.894 kcal (2) G-P(sol) polarization free energy of solvation -87.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds