Wall clock time and date at job start Tue Mar 31 2020 20:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46905 * 109.47002 * 2 1 4 4 C 1.46901 * 110.99862 * 160.17822 * 3 2 1 5 5 C 1.50695 * 109.47043 * 288.34580 * 4 3 2 6 6 O 1.21292 * 120.00131 * 354.48126 * 5 4 3 7 7 N 1.34774 * 119.99939 * 174.48438 * 5 4 3 8 8 C 1.37094 * 120.00080 * 179.97438 * 7 5 4 9 9 H 1.08000 * 120.00392 * 0.02562 * 8 7 5 10 10 C 1.38958 * 120.00022 * 179.97438 * 8 7 5 11 11 N 1.31411 * 119.99780 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99939 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47428 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47172 * 120.00038 * 12 10 8 15 15 H 1.48502 * 109.47431 * 240.00139 * 12 10 8 16 16 C 1.46899 * 110.99606 * 284.13159 * 3 2 1 17 17 H 1.09000 * 109.47217 * 49.99910 * 16 3 2 18 18 C 1.53000 * 109.47431 * 289.99768 * 16 3 2 19 19 C 1.52999 * 109.46774 * 170.00087 * 16 3 2 20 20 N 1.46508 * 109.47112 * 303.77884 * 19 16 3 21 21 C 1.34776 * 119.99613 * 174.86439 * 20 19 16 22 22 O 1.21603 * 120.00535 * 0.02562 * 21 20 19 23 23 C 1.47416 * 119.99377 * 180.02562 * 21 20 19 24 24 N 1.31617 * 125.86375 * 359.97438 * 23 21 20 25 25 C 1.33101 * 109.09052 * 180.02562 * 24 23 21 26 26 C 1.50701 * 125.82065 * 179.97438 * 25 24 23 27 27 C 1.35562 * 108.35129 * 359.97438 * 25 24 23 28 28 N 1.35398 * 107.16224 * 359.97438 * 27 25 24 29 29 H 0.97000 * 126.43763 * 179.72990 * 28 27 25 30 30 H 1.08998 * 109.47131 * 186.05387 * 1 2 3 31 31 H 1.09001 * 109.47231 * 306.05482 * 1 2 3 32 32 H 1.09002 * 109.47020 * 66.05959 * 1 2 3 33 33 H 1.09001 * 109.47085 * 240.00103 * 2 1 3 34 34 H 1.09002 * 109.46893 * 119.99614 * 2 1 3 35 35 H 1.08995 * 109.47246 * 48.34606 * 4 3 2 36 36 H 1.09003 * 109.47024 * 168.34322 * 4 3 2 37 37 H 0.96999 * 120.00327 * 0.02562 * 7 5 4 38 38 H 0.97004 * 119.99335 * 179.97438 * 11 10 8 39 39 H 1.08996 * 109.47033 * 60.00087 * 18 16 3 40 40 H 1.09000 * 109.47318 * 180.02562 * 18 16 3 41 41 H 1.09000 * 109.47036 * 300.00252 * 18 16 3 42 42 H 1.09003 * 109.47508 * 183.78264 * 19 16 3 43 43 H 1.08999 * 109.47743 * 63.77949 * 19 16 3 44 44 H 0.96994 * 119.99891 * 354.87107 * 20 19 16 45 45 H 1.08998 * 109.47136 * 270.01892 * 26 25 24 46 46 H 1.08994 * 109.47477 * 30.01904 * 26 25 24 47 47 H 1.08995 * 109.47152 * 150.02029 * 26 25 24 48 48 H 1.08003 * 126.41305 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4115 1.4513 0.4651 5 6 3.4593 1.1825 1.9471 6 8 2.4287 1.0572 2.5742 7 7 4.6472 1.0815 2.5757 8 6 4.6906 0.8375 3.9240 9 1 3.7730 0.7258 4.4825 10 6 5.9154 0.7328 4.5720 11 7 7.0320 0.8682 3.8924 12 14 5.9746 0.3996 6.4091 13 1 4.5911 0.2883 6.9369 14 1 6.7027 -0.8703 6.6586 15 1 6.6772 1.5154 7.0922 16 6 1.8794 1.9929 -1.3300 17 1 0.8649 1.8355 -1.6962 18 6 2.8758 1.3460 -2.2941 19 6 2.1609 3.4939 -1.2368 20 7 1.2663 4.0981 -0.2464 21 6 1.4035 5.3982 0.0811 22 8 2.2694 6.0699 -0.4458 23 6 0.5036 6.0059 1.0782 24 7 -0.4685 5.3897 1.7165 25 6 -1.0662 6.2516 2.5360 26 6 -2.2278 5.9435 3.4453 27 6 -0.4518 7.4537 2.4130 28 7 0.5362 7.3057 1.4991 29 1 1.1486 7.9943 1.1961 30 1 -0.3633 -1.0219 0.1084 31 1 -0.3634 0.6048 0.8308 32 1 -0.3633 0.4170 -0.9393 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.0058 0.7030 -0.0592 36 1 3.8155 2.4433 0.2624 37 1 5.4714 1.1822 2.0742 38 1 7.8869 0.7955 4.3449 39 1 2.6753 0.2767 -2.3604 40 1 2.7720 1.7974 -3.2808 41 1 3.8903 1.5034 -1.9278 42 1 1.9916 3.9564 -2.2092 43 1 3.1964 3.6514 -0.9350 44 1 0.5754 3.5623 0.1737 45 1 -3.1625 6.1269 2.9155 46 1 -2.1826 4.8983 3.7512 47 1 -2.1784 6.5825 4.3269 48 1 -0.7028 8.3594 2.9450 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155729904.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:48 Heat of formation + Delta-G solvation = -10.272173 kcal Electronic energy + Delta-G solvation = -30052.151630 eV Core-core repulsion = 25950.233734 eV Total energy + Delta-G solvation = -4101.917896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.29173 -39.67953 -38.71777 -37.24928 -34.57902 -33.78046 -33.25154 -31.97838 -31.22568 -31.01393 -29.94035 -27.59143 -26.42291 -26.15978 -24.19969 -23.35250 -22.28629 -20.51110 -20.29972 -20.12032 -18.87193 -18.40504 -17.73346 -16.68684 -16.42210 -16.09405 -15.78759 -15.27708 -14.85864 -14.64486 -14.33708 -14.20361 -14.14581 -13.84777 -13.72703 -13.54810 -13.10636 -12.95302 -12.87695 -12.69124 -12.53289 -12.28616 -12.12004 -11.97302 -11.81671 -11.48788 -11.27515 -11.19902 -11.05720 -10.64300 -10.36063 -10.32327 -10.30670 -10.22600 -10.16434 -10.15580 -9.42849 -9.02655 -8.46160 -8.38288 -7.89907 -7.83554 -6.35937 -3.76035 1.34491 2.50079 2.58033 3.19625 3.29610 3.36980 3.42549 3.53164 3.95384 3.99467 4.24764 4.29384 4.68849 4.83058 4.96301 5.02828 5.11430 5.14290 5.22521 5.30573 5.39349 5.44657 5.50226 5.61084 5.63347 5.65479 5.70976 5.81307 5.86435 5.88115 5.90403 5.92343 5.99333 6.14024 6.16109 6.32445 6.43342 6.46757 6.54031 6.60302 7.05089 7.30283 7.38513 7.49809 7.60856 7.86007 8.13155 8.21137 8.69102 9.25135 9.62149 10.14686 10.82197 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007865 B = 0.003805 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3559.143558 B = 7357.745671 C = 9103.203859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.054 3.946 3 N -0.505 5.505 4 C 0.041 3.959 5 C 0.445 3.555 6 O -0.571 6.571 7 N -0.569 5.569 8 C -0.294 4.294 9 H 0.103 0.897 10 C 0.021 3.979 11 N -0.904 5.904 12 Si 0.927 3.073 13 H -0.268 1.268 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.064 3.936 17 H 0.092 0.908 18 C -0.186 4.186 19 C 0.129 3.871 20 N -0.682 5.682 21 C 0.605 3.395 22 O -0.553 6.553 23 C 0.152 3.848 24 N -0.432 5.432 25 C 0.000 4.000 26 C -0.068 4.068 27 C -0.029 4.029 28 N -0.526 5.526 29 H 0.429 0.571 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.029 0.971 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.390 0.610 38 H 0.270 0.730 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.422 0.578 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.362 8.685 -10.545 19.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.073 4.073 3 N -0.229 5.229 4 C -0.090 4.090 5 C 0.230 3.770 6 O -0.453 6.453 7 N -0.206 5.206 8 C -0.424 4.424 9 H 0.120 0.880 10 C -0.180 4.180 11 N -0.546 5.546 12 Si 0.754 3.246 13 H -0.193 1.193 14 H -0.208 1.208 15 H -0.208 1.208 16 C -0.045 4.045 17 H 0.110 0.890 18 C -0.245 4.245 19 C 0.005 3.995 20 N -0.333 5.333 21 C 0.389 3.611 22 O -0.431 6.431 23 C -0.109 4.109 24 N -0.155 5.155 25 C -0.134 4.134 26 C -0.126 4.126 27 C -0.168 4.168 28 N -0.128 5.128 29 H 0.268 0.732 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.223 0.777 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.260 0.740 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.088 0.912 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -13.730 8.435 -10.229 19.086 hybrid contribution 1.541 0.470 0.307 1.640 sum -12.189 8.904 -9.922 18.064 Atomic orbital electron populations 1.21706 0.95167 1.01214 1.01735 1.22095 0.96037 0.88267 1.00942 1.61792 1.19871 1.19180 1.22016 1.21922 0.89392 1.01784 0.95871 1.19759 0.84641 0.84322 0.88232 1.90531 1.33095 1.54663 1.67055 1.41876 1.06436 1.63186 1.09135 1.19724 0.94141 1.44992 0.83537 0.87963 1.25232 0.94773 0.97701 1.00334 1.69625 0.97607 1.50669 1.36651 0.85837 0.78496 0.77782 0.82453 1.19252 1.20835 1.20848 1.22036 1.00312 0.92843 0.89337 0.88972 1.22409 1.00514 1.01617 0.99952 1.21523 0.94687 0.91777 0.91557 1.45417 1.36278 1.09191 1.42409 1.16430 0.81986 0.82574 0.80107 1.90818 1.35070 1.62469 1.54780 1.22622 1.01309 0.82887 1.04086 1.70160 1.06024 1.31668 1.07654 1.20917 1.01346 0.89669 1.01492 1.20061 0.93103 1.03169 0.96277 1.22690 0.93973 1.01783 0.98344 1.42866 1.27000 1.11402 1.31493 0.73214 0.92938 0.91177 0.93752 0.95265 0.89713 0.93260 0.89512 0.77676 0.92062 0.91675 0.91855 0.91684 0.90989 0.90778 0.73987 0.91358 0.90615 0.91210 0.79845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.93 37.16 0.37 -1.47 16 2 C 0.05 0.81 5.14 -3.82 -0.02 0.79 16 3 N -0.50 -7.73 3.56 -228.08 -0.81 -8.54 16 4 C 0.04 0.73 4.19 -4.98 -0.02 0.71 16 5 C 0.45 10.54 7.19 -10.99 -0.08 10.46 16 6 O -0.57 -15.32 14.90 5.55 0.08 -15.24 16 7 N -0.57 -14.63 5.29 -10.96 -0.06 -14.69 16 8 C -0.29 -8.33 9.68 -14.93 -0.14 -8.47 16 9 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 10 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 11 N -0.90 -25.05 13.05 55.50 0.72 -24.33 16 12 Si 0.93 21.48 29.55 -169.99 -5.02 16.45 16 13 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 C 0.06 0.75 2.35 -67.71 -0.16 0.59 16 17 H 0.09 0.98 6.74 -51.93 -0.35 0.63 16 18 C -0.19 -1.87 8.51 37.16 0.32 -1.55 16 19 C 0.13 1.63 4.91 -4.04 -0.02 1.61 16 20 N -0.68 -9.90 5.36 -61.38 -0.33 -10.23 16 21 C 0.61 9.62 7.81 -12.52 -0.10 9.52 16 22 O -0.55 -9.69 17.09 5.27 0.09 -9.60 16 23 C 0.15 2.29 7.95 -154.52 -1.23 1.06 16 24 N -0.43 -6.68 10.90 -7.50 -0.08 -6.76 16 25 C 0.00 0.00 7.07 -83.00 -0.59 -0.59 16 26 C -0.07 -0.65 10.42 36.01 0.38 -0.27 16 27 C -0.03 -0.30 11.91 -16.93 -0.20 -0.50 16 28 N -0.53 -6.13 6.14 -10.78 -0.07 -6.20 16 29 H 0.43 3.97 8.96 -40.82 -0.37 3.61 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.04 0.49 6.99 -51.93 -0.36 0.12 16 33 H 0.03 0.38 6.17 -51.93 -0.32 0.06 16 34 H 0.08 1.57 6.56 -51.93 -0.34 1.22 16 35 H 0.05 0.80 7.12 -51.93 -0.37 0.43 16 36 H 0.09 1.48 6.01 -51.93 -0.31 1.17 16 37 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 38 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.06 0.65 6.45 -51.93 -0.34 0.32 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.70 6.68 -51.93 -0.35 0.35 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.07 1.05 6.44 -51.93 -0.33 0.71 16 44 H 0.42 6.34 7.96 -40.82 -0.32 6.01 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.18 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 394.23 15.07 5.94 5.94 Total: -1.00 -34.65 394.23 -8.10 -42.76 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: -6.98 Total: 18.08 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: -1.59 Total: 12.35 kcal Atomic # 7 Polarization: -70.13 SS G_CDS: -0.62 Total: -70.75 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: 0.17 Total: -24.84 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.65 -8.10 -42.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155729904.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.483 kcal (2) G-P(sol) polarization free energy of solvation -34.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds