Wall clock time and date at job start Tue Mar 31 2020 20:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46905 * 109.47002 * 2 1 4 4 C 1.46901 * 110.99862 * 160.17822 * 3 2 1 5 5 C 1.50695 * 109.47043 * 288.34580 * 4 3 2 6 6 O 1.21292 * 120.00131 * 354.48126 * 5 4 3 7 7 N 1.34774 * 119.99939 * 174.48438 * 5 4 3 8 8 C 1.37094 * 120.00080 * 179.97438 * 7 5 4 9 9 H 1.08000 * 120.00392 * 0.02562 * 8 7 5 10 10 C 1.38958 * 120.00022 * 179.97438 * 8 7 5 11 11 N 1.31411 * 119.99780 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99939 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47428 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47172 * 120.00038 * 12 10 8 15 15 H 1.48502 * 109.47431 * 240.00139 * 12 10 8 16 16 C 1.46899 * 110.99606 * 284.13159 * 3 2 1 17 17 H 1.09000 * 109.47217 * 49.99910 * 16 3 2 18 18 C 1.53000 * 109.47431 * 289.99768 * 16 3 2 19 19 C 1.52999 * 109.46774 * 170.00087 * 16 3 2 20 20 N 1.46508 * 109.47112 * 303.77884 * 19 16 3 21 21 C 1.34776 * 119.99613 * 174.86439 * 20 19 16 22 22 O 1.21603 * 120.00535 * 0.02562 * 21 20 19 23 23 C 1.47416 * 119.99377 * 180.02562 * 21 20 19 24 24 N 1.31617 * 125.86375 * 359.97438 * 23 21 20 25 25 C 1.33101 * 109.09052 * 180.02562 * 24 23 21 26 26 C 1.50701 * 125.82065 * 179.97438 * 25 24 23 27 27 C 1.35562 * 108.35129 * 359.97438 * 25 24 23 28 28 N 1.35398 * 107.16224 * 359.97438 * 27 25 24 29 29 H 0.97000 * 126.43763 * 179.72990 * 28 27 25 30 30 H 1.08998 * 109.47131 * 186.05387 * 1 2 3 31 31 H 1.09001 * 109.47231 * 306.05482 * 1 2 3 32 32 H 1.09002 * 109.47020 * 66.05959 * 1 2 3 33 33 H 1.09001 * 109.47085 * 240.00103 * 2 1 3 34 34 H 1.09002 * 109.46893 * 119.99614 * 2 1 3 35 35 H 1.08995 * 109.47246 * 48.34606 * 4 3 2 36 36 H 1.09003 * 109.47024 * 168.34322 * 4 3 2 37 37 H 0.96999 * 120.00327 * 0.02562 * 7 5 4 38 38 H 0.97004 * 119.99335 * 179.97438 * 11 10 8 39 39 H 1.08996 * 109.47033 * 60.00087 * 18 16 3 40 40 H 1.09000 * 109.47318 * 180.02562 * 18 16 3 41 41 H 1.09000 * 109.47036 * 300.00252 * 18 16 3 42 42 H 1.09003 * 109.47508 * 183.78264 * 19 16 3 43 43 H 1.08999 * 109.47743 * 63.77949 * 19 16 3 44 44 H 0.96994 * 119.99891 * 354.87107 * 20 19 16 45 45 H 1.08998 * 109.47136 * 270.01892 * 26 25 24 46 46 H 1.08994 * 109.47477 * 30.01904 * 26 25 24 47 47 H 1.08995 * 109.47152 * 150.02029 * 26 25 24 48 48 H 1.08003 * 126.41305 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4115 1.4513 0.4651 5 6 3.4593 1.1825 1.9471 6 8 2.4287 1.0572 2.5742 7 7 4.6472 1.0815 2.5757 8 6 4.6906 0.8375 3.9240 9 1 3.7730 0.7258 4.4825 10 6 5.9154 0.7328 4.5720 11 7 7.0320 0.8682 3.8924 12 14 5.9746 0.3996 6.4091 13 1 4.5911 0.2883 6.9369 14 1 6.7027 -0.8703 6.6586 15 1 6.6772 1.5154 7.0922 16 6 1.8794 1.9929 -1.3300 17 1 0.8649 1.8355 -1.6962 18 6 2.8758 1.3460 -2.2941 19 6 2.1609 3.4939 -1.2368 20 7 1.2663 4.0981 -0.2464 21 6 1.4035 5.3982 0.0811 22 8 2.2694 6.0699 -0.4458 23 6 0.5036 6.0059 1.0782 24 7 -0.4685 5.3897 1.7165 25 6 -1.0662 6.2516 2.5360 26 6 -2.2278 5.9435 3.4453 27 6 -0.4518 7.4537 2.4130 28 7 0.5362 7.3057 1.4991 29 1 1.1486 7.9943 1.1961 30 1 -0.3633 -1.0219 0.1084 31 1 -0.3634 0.6048 0.8308 32 1 -0.3633 0.4170 -0.9393 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.0058 0.7030 -0.0592 36 1 3.8155 2.4433 0.2624 37 1 5.4714 1.1822 2.0742 38 1 7.8869 0.7955 4.3449 39 1 2.6753 0.2767 -2.3604 40 1 2.7720 1.7974 -3.2808 41 1 3.8903 1.5034 -1.9278 42 1 1.9916 3.9564 -2.2092 43 1 3.1964 3.6514 -0.9350 44 1 0.5754 3.5623 0.1737 45 1 -3.1625 6.1269 2.9155 46 1 -2.1826 4.8983 3.7512 47 1 -2.1784 6.5825 4.3269 48 1 -0.7028 8.3594 2.9450 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155729904.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:46 Heat of formation + Delta-G solvation = -37.711071 kcal Electronic energy + Delta-G solvation = -30053.341470 eV Core-core repulsion = 25950.233734 eV Total energy + Delta-G solvation = -4103.107736 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.25063 -40.93714 -40.16801 -38.83073 -35.99281 -35.59654 -34.19436 -33.27850 -32.99034 -32.02249 -31.26027 -28.51141 -27.94781 -27.10439 -26.01590 -24.37767 -23.39544 -21.74258 -21.47011 -21.23792 -20.38848 -19.81306 -19.37274 -18.15837 -17.49656 -17.24084 -17.02733 -16.71563 -16.34283 -16.18465 -15.70413 -15.66859 -15.43339 -15.03476 -14.94272 -14.84945 -14.24875 -13.98689 -13.94206 -13.75224 -13.65221 -13.53848 -13.46233 -13.08473 -13.04472 -12.91598 -12.86395 -12.41207 -12.36032 -12.30911 -12.12831 -11.87017 -11.51158 -11.49173 -11.38126 -11.25403 -11.15927 -10.26333 -10.16381 -9.97669 -9.36979 -9.12352 -8.45606 -5.93581 0.31793 1.35059 1.39248 1.52889 1.53810 1.62153 2.09777 2.27784 2.33436 2.54478 2.77939 3.21277 3.26170 3.41016 3.73270 3.95566 4.03986 4.13002 4.17154 4.25461 4.32191 4.38357 4.42894 4.53639 4.57592 4.63461 4.70359 4.75317 4.84940 4.86059 4.89526 4.96339 4.99653 5.12712 5.15668 5.22817 5.27141 5.38060 5.41383 5.48978 5.67392 5.92620 6.13029 6.18445 6.26283 6.37883 6.62913 6.83747 7.06571 7.15473 7.59573 8.16458 8.72396 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007865 B = 0.003805 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3559.143558 B = 7357.745671 C = 9103.203859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 N -0.520 5.520 4 C 0.059 3.941 5 C 0.443 3.557 6 O -0.607 6.607 7 N -0.580 5.580 8 C -0.327 4.327 9 H 0.076 0.924 10 C -0.015 4.015 11 N -0.923 5.923 12 Si 0.990 3.010 13 H -0.274 1.274 14 H -0.269 1.269 15 H -0.272 1.272 16 C 0.071 3.929 17 H 0.112 0.888 18 C -0.181 4.181 19 C 0.126 3.874 20 N -0.681 5.681 21 C 0.599 3.401 22 O -0.579 6.579 23 C 0.112 3.888 24 N -0.461 5.461 25 C -0.034 4.034 26 C -0.064 4.064 27 C 0.001 3.999 28 N -0.518 5.518 29 H 0.439 0.561 30 H 0.064 0.936 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.393 0.607 38 H 0.276 0.724 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.093 0.907 43 H 0.058 0.942 44 H 0.419 0.581 45 H 0.083 0.917 46 H 0.054 0.946 47 H 0.095 0.905 48 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.012 9.562 -11.258 20.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.071 4.071 3 N -0.245 5.245 4 C -0.072 4.072 5 C 0.230 3.770 6 O -0.491 6.491 7 N -0.219 5.219 8 C -0.457 4.457 9 H 0.094 0.906 10 C -0.214 4.214 11 N -0.565 5.565 12 Si 0.814 3.186 13 H -0.199 1.199 14 H -0.194 1.194 15 H -0.198 1.198 16 C -0.037 4.037 17 H 0.130 0.870 18 C -0.240 4.240 19 C 0.003 3.997 20 N -0.330 5.330 21 C 0.384 3.616 22 O -0.460 6.460 23 C -0.148 4.148 24 N -0.185 5.185 25 C -0.168 4.168 26 C -0.122 4.122 27 C -0.139 4.139 28 N -0.120 5.120 29 H 0.280 0.720 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.226 0.774 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.256 0.744 45 H 0.101 0.899 46 H 0.073 0.927 47 H 0.114 0.886 48 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -14.360 9.299 -10.990 20.334 hybrid contribution 1.646 0.250 0.536 1.749 sum -12.715 9.549 -10.453 19.029 Atomic orbital electron populations 1.21639 0.93726 1.01674 1.01988 1.22048 0.97171 0.87892 1.00032 1.61715 1.18192 1.19806 1.24782 1.21685 0.91576 1.02556 0.91419 1.20835 0.83397 0.82115 0.90666 1.90499 1.34214 1.55690 1.68739 1.41959 1.07239 1.64049 1.08606 1.19650 0.93785 1.47292 0.84957 0.90553 1.26004 0.94042 0.96840 1.04499 1.69688 0.98023 1.50516 1.38246 0.84909 0.78197 0.78293 0.77178 1.19861 1.19432 1.19765 1.22108 1.02053 0.91810 0.87749 0.87007 1.22370 0.99202 1.01882 1.00520 1.21671 0.93472 0.92551 0.92001 1.45504 1.36186 1.08878 1.42469 1.16665 0.81904 0.82836 0.80184 1.90780 1.36210 1.63016 1.55959 1.22465 1.02374 0.84371 1.05540 1.70086 1.06649 1.33251 1.08531 1.21583 1.02669 0.90411 1.02117 1.20131 0.92736 1.02468 0.96877 1.23476 0.91601 1.02540 0.96259 1.42948 1.27239 1.10628 1.31226 0.72017 0.91751 0.93946 0.91026 0.92611 0.94017 0.91296 0.88847 0.77383 0.91457 0.91113 0.89402 0.92533 0.88856 0.92404 0.74412 0.89885 0.92653 0.88594 0.74994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 9.93 71.98 0.71 -2.64 16 2 C 0.06 1.64 5.14 86.30 0.44 2.09 16 3 N -0.52 -15.79 3.56 -875.52 -3.12 -18.91 16 4 C 0.06 2.09 4.19 85.56 0.36 2.45 16 5 C 0.44 21.75 7.19 87.66 0.63 22.38 16 6 O -0.61 -34.21 14.90 -3.07 -0.05 -34.26 16 7 N -0.58 -30.97 5.29 -306.99 -1.62 -32.59 16 8 C -0.33 -19.20 9.68 84.04 0.81 -18.38 16 9 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 10 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 11 N -0.92 -51.39 13.05 21.67 0.28 -51.10 16 12 Si 0.99 44.35 29.55 68.60 2.03 46.37 16 13 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 14 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 16 C 0.07 1.54 2.35 44.92 0.11 1.64 16 17 H 0.11 2.04 6.74 -2.39 -0.02 2.03 16 18 C -0.18 -3.13 8.51 71.98 0.61 -2.52 16 19 C 0.13 3.10 4.91 86.38 0.42 3.52 16 20 N -0.68 -20.03 5.36 -466.37 -2.50 -22.53 16 21 C 0.60 19.50 7.81 86.66 0.68 20.18 16 22 O -0.58 -20.65 17.09 -4.04 -0.07 -20.72 16 23 C 0.11 3.42 7.95 136.28 1.08 4.50 16 24 N -0.46 -14.53 10.90 -177.63 -1.94 -16.46 16 25 C -0.03 -0.82 7.07 41.75 0.30 -0.52 16 26 C -0.06 -1.14 10.42 71.24 0.74 -0.40 16 27 C 0.00 0.02 11.91 83.52 0.99 1.01 16 28 N -0.52 -11.59 6.14 -188.01 -1.16 -12.74 16 29 H 0.44 7.70 8.96 -92.71 -0.83 6.87 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.41 6.99 -2.39 -0.02 1.39 16 33 H 0.06 1.33 6.17 -2.39 -0.01 1.32 16 34 H 0.04 1.59 6.56 -2.39 -0.02 1.57 16 35 H 0.07 2.19 7.12 -2.39 -0.02 2.17 16 36 H 0.09 3.23 6.01 -2.39 -0.01 3.21 16 37 H 0.39 20.13 7.90 -92.71 -0.73 19.40 16 38 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 39 H 0.07 1.18 6.45 -2.39 -0.02 1.16 16 40 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.06 1.09 6.68 -2.39 -0.02 1.08 16 42 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.06 1.62 6.44 -2.39 -0.02 1.61 16 44 H 0.42 12.91 7.96 -92.71 -0.74 12.17 16 45 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.23 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -79.20 394.23 -1.04 -80.24 By element: Atomic # 1 Polarization: 51.00 SS G_CDS: -1.27 Total: 49.72 kcal Atomic # 6 Polarization: 24.61 SS G_CDS: 8.36 Total: 32.97 kcal Atomic # 7 Polarization: -144.28 SS G_CDS: -10.05 Total: -154.33 kcal Atomic # 8 Polarization: -54.87 SS G_CDS: -0.11 Total: -54.98 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -79.20 -1.04 -80.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155729904.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.528 kcal (2) G-P(sol) polarization free energy of solvation -79.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds