Wall clock time and date at job start Tue Mar 31 2020 20:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46892 * 2 1 4 4 C 1.36932 * 119.99944 * 275.73061 * 3 2 1 5 5 H 1.08003 * 120.00216 * 33.27242 * 4 3 2 6 6 C 1.38813 * 120.00071 * 213.27423 * 4 3 2 7 7 N 1.31615 * 120.00049 * 17.25855 * 6 4 3 8 8 Si 1.86800 * 120.00105 * 197.26635 * 6 4 3 9 9 H 1.48500 * 109.47352 * 59.99715 * 8 6 4 10 10 H 1.48501 * 109.47475 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46844 * 299.99615 * 8 6 4 12 12 C 1.46501 * 119.99964 * 95.73331 * 3 2 1 13 13 H 1.09002 * 109.47399 * 180.08530 * 12 3 2 14 14 C 1.53000 * 109.47334 * 60.08511 * 12 3 2 15 15 C 1.52999 * 109.46890 * 300.08165 * 12 3 2 16 16 N 1.46493 * 109.47502 * 305.00232 * 15 12 3 17 17 C 1.34776 * 120.00469 * 180.02562 * 16 15 12 18 18 O 1.21600 * 119.99691 * 359.97438 * 17 16 15 19 19 C 1.47524 * 120.00208 * 179.97438 * 17 16 15 20 20 C 1.36601 * 125.76780 * 179.97438 * 19 17 16 21 21 N 1.34820 * 106.83620 * 179.71353 * 20 19 17 22 22 C 1.46502 * 126.59212 * 180.24126 * 21 20 19 23 23 H 1.08992 * 110.45173 * 152.39860 * 22 21 20 24 24 C 1.54505 * 110.51295 * 275.00303 * 22 21 20 25 25 C 1.54483 * 104.06135 * 118.64344 * 24 22 21 26 26 O 1.44426 * 104.80143 * 23.98272 * 25 24 22 27 27 C 1.44421 * 105.27223 * 319.48383 * 26 25 24 28 28 N 1.40208 * 106.81105 * 0.26575 * 21 20 19 29 29 N 1.28764 * 108.36623 * 0.02562 * 28 21 20 30 30 H 1.08995 * 109.46860 * 60.00512 * 1 2 3 31 31 H 1.09006 * 109.46801 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47273 * 299.99546 * 1 2 3 33 33 H 1.08995 * 109.47658 * 239.99780 * 2 1 3 34 34 H 1.09000 * 109.47264 * 119.99744 * 2 1 3 35 35 H 0.96996 * 120.00176 * 180.02562 * 7 6 4 36 36 H 1.08998 * 109.46995 * 59.99756 * 14 12 3 37 37 H 1.09001 * 109.47098 * 180.02562 * 14 12 3 38 38 H 1.09007 * 109.46607 * 299.99653 * 14 12 3 39 39 H 1.08999 * 109.46943 * 184.99964 * 15 12 3 40 40 H 1.09005 * 109.47174 * 65.00454 * 15 12 3 41 41 H 0.97005 * 119.99938 * 0.02562 * 16 15 12 42 42 H 1.08001 * 126.58037 * 359.97438 * 20 19 17 43 43 H 1.08990 * 110.51303 * 237.29319 * 24 22 21 44 44 H 1.09002 * 110.51207 * 359.86774 * 24 22 21 45 45 H 1.09005 * 110.37065 * 142.81122 * 25 24 22 46 46 H 1.09001 * 110.37590 * 265.03707 * 25 24 22 47 47 H 1.09000 * 110.37654 * 281.68022 * 27 26 25 48 48 H 1.09002 * 110.37031 * 159.34557 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1349 2.0662 -1.1800 5 1 1.4369 1.8810 -1.9831 6 6 3.1501 2.9986 -1.3439 7 7 4.1870 2.9919 -0.5333 8 14 3.0445 4.2630 -2.7148 9 1 1.8243 5.0896 -2.5331 10 1 4.2443 5.1373 -2.6755 11 1 2.9809 3.5678 -4.0255 12 6 2.3819 2.0296 1.2624 13 1 2.7189 3.0471 1.0644 14 6 3.5077 1.2414 1.9349 15 6 1.1629 2.0668 2.1862 16 7 0.0466 2.7173 1.4958 17 6 -1.1387 2.8639 2.1203 18 8 -1.2816 2.4558 3.2568 19 6 -2.2627 3.5195 1.4252 20 6 -3.5092 3.7287 1.9434 21 7 -4.2270 4.3586 0.9918 22 6 -5.6224 4.7928 1.0947 23 1 -5.8027 5.6514 0.4479 24 6 -6.5782 3.6335 0.7346 25 6 -7.3977 3.4083 2.0247 26 8 -7.3358 4.6693 2.7260 27 6 -5.9775 5.1309 2.5596 28 7 -3.3815 4.5175 -0.1153 29 7 -2.2347 4.0085 0.1737 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 4.8962 3.6436 -0.6476 36 1 4.3761 1.2148 1.2767 37 1 3.7779 1.7235 2.8744 38 1 3.1706 0.2238 2.1330 39 1 1.4079 2.6269 3.0886 40 1 0.8800 1.0492 2.4557 41 1 0.1604 3.0426 0.5890 42 1 -3.8523 3.4476 2.9281 43 1 -7.2327 3.9198 -0.0886 44 1 -6.0125 2.7379 0.4778 45 1 -8.4306 3.1606 1.7797 46 1 -6.9504 2.6159 2.6249 47 1 -5.3113 4.6042 3.2428 48 1 -5.9193 6.2066 2.7255 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156240416.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:55 Heat of formation + Delta-G solvation = 45.050883 kcal Electronic energy + Delta-G solvation = -30323.157970 eV Core-core repulsion = 26223.639061 eV Total energy + Delta-G solvation = -4099.518909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.36329 -39.96219 -38.95544 -36.83260 -34.95334 -33.61548 -31.81318 -31.55219 -31.26239 -30.53428 -29.34451 -28.10691 -25.93168 -24.30243 -23.86226 -23.31481 -22.77311 -21.62369 -21.12834 -20.06095 -19.24219 -18.24892 -17.21321 -16.97995 -16.50200 -15.96167 -15.81837 -15.58040 -15.19169 -14.82279 -14.65401 -14.60701 -13.93465 -13.86794 -13.68357 -13.14593 -13.10061 -12.67951 -12.64523 -12.31762 -12.22340 -12.10695 -12.03144 -11.78524 -11.59588 -11.45570 -11.20579 -10.99589 -10.90009 -10.70590 -10.63926 -10.52479 -10.45104 -10.25448 -10.01929 -9.70057 -9.58384 -9.38904 -9.31696 -8.44272 -8.35639 -6.60460 -5.80984 -3.29072 1.03285 1.73279 1.85703 3.22847 3.41455 3.46643 3.51082 3.57296 3.61515 3.76769 3.86178 4.12482 4.20990 4.36943 4.48351 4.50933 4.75613 4.80711 4.95065 5.07503 5.10629 5.15227 5.24001 5.32948 5.34370 5.45462 5.81006 5.92895 5.95716 6.10890 6.21460 6.24811 6.29900 6.41874 6.51950 6.58442 6.65886 6.72775 6.87188 6.97089 7.05686 7.22368 7.52589 7.61830 7.85686 7.88122 8.21710 8.50529 8.68205 9.23509 9.84649 10.41043 11.25796 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015177 B = 0.003083 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.452556 B = 9078.838710 C = 9929.271647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 N -0.582 5.582 4 C -0.260 4.260 5 H 0.063 0.937 6 C 0.012 3.988 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.292 1.292 11 H -0.283 1.283 12 C 0.176 3.824 13 H 0.101 0.899 14 C -0.144 4.144 15 C 0.100 3.900 16 N -0.681 5.681 17 C 0.591 3.409 18 O -0.559 6.559 19 C -0.085 4.085 20 C 0.080 3.920 21 N -0.361 5.361 22 C 0.119 3.881 23 H 0.129 0.871 24 C -0.167 4.167 25 C 0.042 3.958 26 O -0.361 6.361 27 C 0.036 3.964 28 N -0.063 5.063 29 N -0.190 5.190 30 H 0.047 0.953 31 H 0.031 0.969 32 H 0.050 0.950 33 H 0.041 0.959 34 H 0.036 0.964 35 H 0.254 0.746 36 H 0.079 0.921 37 H 0.033 0.967 38 H 0.029 0.971 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.420 0.580 42 H 0.201 0.799 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.103 0.897 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.979 1.835 6.433 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 N -0.303 5.303 4 C -0.390 4.390 5 H 0.081 0.919 6 C -0.187 4.187 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.218 1.218 11 H -0.209 1.209 12 C 0.068 3.932 13 H 0.118 0.882 14 C -0.203 4.203 15 C -0.025 4.025 16 N -0.330 5.330 17 C 0.374 3.626 18 O -0.439 6.439 19 C -0.224 4.224 20 C -0.076 4.076 21 N -0.147 5.147 22 C 0.016 3.984 23 H 0.147 0.853 24 C -0.206 4.206 25 C -0.035 4.035 26 O -0.278 6.278 27 C -0.042 4.042 28 N -0.042 5.042 29 N -0.064 5.064 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.258 0.742 42 H 0.217 0.783 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.121 0.879 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -19.954 2.293 5.890 20.931 hybrid contribution -0.030 0.368 -0.353 0.511 sum -19.984 2.662 5.538 20.907 Atomic orbital electron populations 1.22448 1.00102 0.98800 1.01610 1.20746 0.91615 0.87438 0.98689 1.43863 1.75940 1.08253 1.02265 1.19045 1.08427 1.18156 0.93322 0.91887 1.25116 0.94506 1.01254 0.97861 1.69992 1.07881 1.36025 1.39710 0.86485 0.77069 0.81758 0.82183 1.20611 1.21803 1.20920 1.20506 0.88801 0.99673 0.84203 0.88159 1.22019 1.01124 0.97912 0.99225 1.22267 0.87988 0.96318 0.95911 1.45843 1.10178 1.57494 1.19472 1.16795 0.81719 0.79012 0.85039 1.90754 1.83307 1.52021 1.17801 1.21678 0.96314 1.11349 0.93100 1.23192 0.91748 0.95958 0.96662 1.50500 1.11606 1.40616 1.12010 1.22981 0.75728 0.99388 1.00338 0.85294 1.23433 0.98330 0.98704 1.00116 1.23531 1.01879 0.86985 0.91080 1.89237 1.27096 1.36551 1.74921 1.23864 0.85216 1.02538 0.92610 1.82074 0.94820 1.21365 1.05979 1.74781 1.13186 1.06274 1.12141 0.93376 0.94996 0.93112 0.94109 0.94521 0.93584 0.90233 0.94831 0.95147 0.92638 0.92541 0.74166 0.78256 0.88348 0.89010 0.87905 0.91313 0.90515 0.86902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 9.87 37.16 0.37 -2.83 16 2 C 0.14 2.92 5.67 -4.04 -0.02 2.90 16 3 N -0.58 -13.41 1.85 -165.66 -0.31 -13.72 16 4 C -0.26 -6.68 9.26 -15.06 -0.14 -6.82 16 5 H 0.06 1.65 7.89 -52.48 -0.41 1.24 16 6 C 0.01 0.33 4.85 -17.43 -0.08 0.24 16 7 N -0.89 -24.16 10.60 55.49 0.59 -23.57 16 8 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.18 3.82 1.92 -67.93 -0.13 3.69 16 13 H 0.10 2.49 6.04 -51.93 -0.31 2.18 16 14 C -0.14 -2.94 9.05 37.16 0.34 -2.61 16 15 C 0.10 1.96 4.34 -4.05 -0.02 1.94 16 16 N -0.68 -13.15 3.98 -61.35 -0.24 -13.40 16 17 C 0.59 10.80 7.58 -12.48 -0.09 10.71 16 18 O -0.56 -10.98 16.86 5.28 0.09 -10.89 16 19 C -0.09 -1.36 6.99 -83.55 -0.58 -1.95 16 20 C 0.08 0.96 10.27 -16.83 -0.17 0.78 16 21 N -0.36 -3.95 3.54 -53.04 -0.19 -4.14 16 22 C 0.12 0.84 4.28 -66.36 -0.28 0.56 16 23 H 0.13 0.79 8.14 -51.93 -0.42 0.36 16 24 C -0.17 -0.98 6.88 -25.16 -0.17 -1.15 16 25 C 0.04 0.22 7.63 37.94 0.29 0.51 16 26 O -0.36 -2.63 11.65 -35.23 -0.41 -3.04 16 27 C 0.04 0.22 7.18 37.93 0.27 0.49 16 28 N -0.06 -0.94 13.78 60.35 0.83 -0.11 16 29 N -0.19 -3.29 12.04 32.85 0.40 -2.89 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.98 4.99 -51.93 -0.26 0.72 16 33 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 34 H 0.04 0.72 6.45 -51.93 -0.33 0.39 16 35 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 36 H 0.08 1.86 7.39 -51.93 -0.38 1.47 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.03 0.57 6.67 -51.93 -0.35 0.23 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.10 7.05 -51.93 -0.37 0.74 16 41 H 0.42 8.78 7.58 -40.82 -0.31 8.47 16 42 H 0.20 1.78 6.88 -52.49 -0.36 1.42 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 0.65 7.97 -51.93 -0.41 0.23 16 45 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.08 0.45 5.97 -51.93 -0.31 0.14 16 48 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 385.53 15.07 5.81 5.81 Total: -1.00 -30.44 385.53 -6.07 -36.52 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -7.17 Total: 6.78 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -0.44 Total: 6.47 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 1.08 Total: -57.82 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.32 Total: -13.93 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.44 -6.07 -36.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156240416.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.567 kcal (2) G-P(sol) polarization free energy of solvation -30.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds