Wall clock time and date at job start Tue Mar 31 2020 20:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46892 * 2 1 4 4 C 1.36932 * 119.99944 * 275.73061 * 3 2 1 5 5 H 1.08003 * 120.00216 * 33.27242 * 4 3 2 6 6 C 1.38813 * 120.00071 * 213.27423 * 4 3 2 7 7 N 1.31615 * 120.00049 * 17.25855 * 6 4 3 8 8 Si 1.86800 * 120.00105 * 197.26635 * 6 4 3 9 9 H 1.48500 * 109.47352 * 59.99715 * 8 6 4 10 10 H 1.48501 * 109.47475 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46844 * 299.99615 * 8 6 4 12 12 C 1.46501 * 119.99964 * 95.73331 * 3 2 1 13 13 H 1.09002 * 109.47399 * 180.08530 * 12 3 2 14 14 C 1.53000 * 109.47334 * 60.08511 * 12 3 2 15 15 C 1.52999 * 109.46890 * 300.08165 * 12 3 2 16 16 N 1.46493 * 109.47502 * 305.00232 * 15 12 3 17 17 C 1.34776 * 120.00469 * 180.02562 * 16 15 12 18 18 O 1.21600 * 119.99691 * 359.97438 * 17 16 15 19 19 C 1.47524 * 120.00208 * 179.97438 * 17 16 15 20 20 C 1.36601 * 125.76780 * 179.97438 * 19 17 16 21 21 N 1.34820 * 106.83620 * 179.71353 * 20 19 17 22 22 C 1.46502 * 126.59212 * 180.24126 * 21 20 19 23 23 H 1.08992 * 110.45173 * 152.39860 * 22 21 20 24 24 C 1.54505 * 110.51295 * 275.00303 * 22 21 20 25 25 C 1.54483 * 104.06135 * 118.64344 * 24 22 21 26 26 O 1.44426 * 104.80143 * 23.98272 * 25 24 22 27 27 C 1.44421 * 105.27223 * 319.48383 * 26 25 24 28 28 N 1.40208 * 106.81105 * 0.26575 * 21 20 19 29 29 N 1.28764 * 108.36623 * 0.02562 * 28 21 20 30 30 H 1.08995 * 109.46860 * 60.00512 * 1 2 3 31 31 H 1.09006 * 109.46801 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47273 * 299.99546 * 1 2 3 33 33 H 1.08995 * 109.47658 * 239.99780 * 2 1 3 34 34 H 1.09000 * 109.47264 * 119.99744 * 2 1 3 35 35 H 0.96996 * 120.00176 * 180.02562 * 7 6 4 36 36 H 1.08998 * 109.46995 * 59.99756 * 14 12 3 37 37 H 1.09001 * 109.47098 * 180.02562 * 14 12 3 38 38 H 1.09007 * 109.46607 * 299.99653 * 14 12 3 39 39 H 1.08999 * 109.46943 * 184.99964 * 15 12 3 40 40 H 1.09005 * 109.47174 * 65.00454 * 15 12 3 41 41 H 0.97005 * 119.99938 * 0.02562 * 16 15 12 42 42 H 1.08001 * 126.58037 * 359.97438 * 20 19 17 43 43 H 1.08990 * 110.51303 * 237.29319 * 24 22 21 44 44 H 1.09002 * 110.51207 * 359.86774 * 24 22 21 45 45 H 1.09005 * 110.37065 * 142.81122 * 25 24 22 46 46 H 1.09001 * 110.37590 * 265.03707 * 25 24 22 47 47 H 1.09000 * 110.37654 * 281.68022 * 27 26 25 48 48 H 1.09002 * 110.37031 * 159.34557 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1349 2.0662 -1.1800 5 1 1.4369 1.8810 -1.9831 6 6 3.1501 2.9986 -1.3439 7 7 4.1870 2.9919 -0.5333 8 14 3.0445 4.2630 -2.7148 9 1 1.8243 5.0896 -2.5331 10 1 4.2443 5.1373 -2.6755 11 1 2.9809 3.5678 -4.0255 12 6 2.3819 2.0296 1.2624 13 1 2.7189 3.0471 1.0644 14 6 3.5077 1.2414 1.9349 15 6 1.1629 2.0668 2.1862 16 7 0.0466 2.7173 1.4958 17 6 -1.1387 2.8639 2.1203 18 8 -1.2816 2.4558 3.2568 19 6 -2.2627 3.5195 1.4252 20 6 -3.5092 3.7287 1.9434 21 7 -4.2270 4.3586 0.9918 22 6 -5.6224 4.7928 1.0947 23 1 -5.8027 5.6514 0.4479 24 6 -6.5782 3.6335 0.7346 25 6 -7.3977 3.4083 2.0247 26 8 -7.3358 4.6693 2.7260 27 6 -5.9775 5.1309 2.5596 28 7 -3.3815 4.5175 -0.1153 29 7 -2.2347 4.0085 0.1737 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 4.8962 3.6436 -0.6476 36 1 4.3761 1.2148 1.2767 37 1 3.7779 1.7235 2.8744 38 1 3.1706 0.2238 2.1330 39 1 1.4079 2.6269 3.0886 40 1 0.8800 1.0492 2.4557 41 1 0.1604 3.0426 0.5890 42 1 -3.8523 3.4476 2.9281 43 1 -7.2327 3.9198 -0.0886 44 1 -6.0125 2.7379 0.4778 45 1 -8.4306 3.1606 1.7797 46 1 -6.9504 2.6159 2.6249 47 1 -5.3113 4.6042 3.2428 48 1 -5.9193 6.2066 2.7255 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156240416.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:53 Heat of formation + Delta-G solvation = 24.639185 kcal Electronic energy + Delta-G solvation = -30324.043087 eV Core-core repulsion = 26223.639061 eV Total energy + Delta-G solvation = -4100.404026 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.40319 -40.67569 -40.26753 -38.53255 -35.80772 -35.18853 -33.70310 -32.79184 -32.32856 -31.64661 -29.97876 -29.86247 -27.35740 -25.77506 -25.14810 -24.35075 -23.60439 -23.23057 -21.97043 -21.25692 -20.98045 -19.36474 -18.64401 -17.74553 -17.66779 -17.11575 -16.93029 -16.60470 -16.34932 -16.27817 -15.97461 -15.65842 -15.44329 -15.30130 -14.66441 -14.47567 -14.31003 -13.96307 -13.79267 -13.64805 -13.48376 -13.40750 -13.20203 -13.12723 -12.77540 -12.72027 -12.59814 -12.52319 -12.39284 -12.23871 -12.08114 -12.06161 -11.84684 -11.36030 -11.34128 -11.17185 -11.14163 -10.97171 -10.45412 -10.40356 -9.86914 -8.50288 -7.80721 -5.29465 0.04348 0.60522 0.88669 1.49486 1.53110 1.58566 2.25441 2.28427 2.56081 2.74973 3.09991 3.26685 3.28316 3.33887 3.59560 3.67480 3.73270 3.86388 3.87387 4.09491 4.16296 4.26184 4.46628 4.51551 4.53938 4.60195 4.63804 4.69736 4.73468 4.77015 4.83861 4.88102 4.90811 4.96043 5.00569 5.08154 5.24215 5.27881 5.33596 5.50212 5.60342 5.60949 5.72551 5.78498 5.91770 6.51280 6.58271 6.89215 7.19774 7.27666 7.95708 8.46244 9.22854 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015177 B = 0.003083 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.452556 B = 9078.838710 C = 9929.271647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.141 3.859 3 N -0.591 5.591 4 C -0.259 4.259 5 H 0.054 0.946 6 C -0.028 4.028 7 N -0.912 5.912 8 Si 0.946 3.054 9 H -0.283 1.283 10 H -0.296 1.296 11 H -0.282 1.282 12 C 0.180 3.820 13 H 0.068 0.932 14 C -0.134 4.134 15 C 0.113 3.887 16 N -0.688 5.688 17 C 0.595 3.405 18 O -0.574 6.574 19 C -0.115 4.115 20 C 0.107 3.893 21 N -0.341 5.341 22 C 0.109 3.891 23 H 0.141 0.859 24 C -0.162 4.162 25 C 0.042 3.958 26 O -0.374 6.374 27 C 0.039 3.961 28 N -0.082 5.082 29 N -0.226 5.226 30 H 0.031 0.969 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.030 0.970 34 H 0.050 0.950 35 H 0.249 0.751 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.045 0.955 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.412 0.588 42 H 0.234 0.766 43 H 0.113 0.887 44 H 0.080 0.920 45 H 0.119 0.881 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.418 1.658 7.431 23.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.015 3.985 3 N -0.313 5.313 4 C -0.390 4.390 5 H 0.072 0.928 6 C -0.225 4.225 7 N -0.556 5.556 8 Si 0.775 3.225 9 H -0.210 1.210 10 H -0.222 1.222 11 H -0.208 1.208 12 C 0.073 3.927 13 H 0.086 0.914 14 C -0.193 4.193 15 C -0.012 4.012 16 N -0.336 5.336 17 C 0.380 3.620 18 O -0.455 6.455 19 C -0.254 4.254 20 C -0.051 4.051 21 N -0.126 5.126 22 C 0.008 3.992 23 H 0.159 0.841 24 C -0.201 4.201 25 C -0.035 4.035 26 O -0.292 6.292 27 C -0.040 4.040 28 N -0.062 5.062 29 N -0.099 5.099 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.248 0.752 42 H 0.250 0.750 43 H 0.131 0.869 44 H 0.099 0.901 45 H 0.137 0.863 46 H 0.091 0.909 47 H 0.100 0.900 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -22.435 2.115 6.879 23.561 hybrid contribution 0.579 0.405 -0.632 0.948 sum -21.855 2.520 6.247 22.870 Atomic orbital electron populations 1.22254 0.98437 1.00116 1.00562 1.20822 0.92728 0.86139 0.98809 1.43972 1.76110 1.09221 1.01979 1.19130 1.07658 1.18212 0.93962 0.92848 1.25599 0.94570 1.02712 0.99649 1.70107 1.08245 1.36388 1.40887 0.85689 0.76418 0.79959 0.80385 1.20969 1.22197 1.20798 1.20381 0.90102 0.97980 0.84271 0.91444 1.21871 0.99385 0.98849 0.99195 1.22024 0.87179 0.96677 0.95327 1.45846 1.10726 1.57952 1.19077 1.16991 0.81749 0.78438 0.84808 1.90732 1.83618 1.52808 1.18349 1.21523 0.97124 1.13346 0.93453 1.23577 0.90228 0.93866 0.97412 1.50730 1.12438 1.38848 1.10625 1.23437 0.73593 1.00410 1.01784 0.84091 1.23428 0.98033 0.97551 1.01054 1.23652 1.02840 0.86446 0.90537 1.89237 1.27485 1.37328 1.75182 1.23930 0.84972 1.03503 0.91548 1.81976 0.94860 1.21873 1.07469 1.74755 1.14521 1.07477 1.13141 0.94981 0.92424 0.93513 0.95128 0.93169 0.94203 0.93330 0.92913 0.93611 0.91971 0.92177 0.75179 0.75014 0.86906 0.90128 0.86298 0.90869 0.90036 0.85553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.64 9.87 71.98 0.71 -4.93 16 2 C 0.14 5.72 5.67 86.38 0.49 6.21 16 3 N -0.59 -27.44 1.85 -678.03 -1.25 -28.69 16 4 C -0.26 -13.55 9.26 84.03 0.78 -12.77 16 5 H 0.05 2.86 7.89 -2.91 -0.02 2.84 16 6 C -0.03 -1.48 4.85 84.86 0.41 -1.07 16 7 N -0.91 -50.42 10.60 21.65 0.23 -50.19 16 8 Si 0.95 44.51 29.59 68.60 2.03 46.54 16 9 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 10 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 12 C 0.18 7.87 1.92 44.99 0.09 7.96 16 13 H 0.07 3.44 6.04 -2.39 -0.01 3.42 16 14 C -0.13 -5.43 9.05 71.98 0.65 -4.78 16 15 C 0.11 4.35 4.34 86.38 0.37 4.73 16 16 N -0.69 -26.61 3.98 -466.28 -1.86 -28.47 16 17 C 0.60 21.40 7.58 86.69 0.66 22.06 16 18 O -0.57 -21.79 16.86 -4.03 -0.07 -21.85 16 19 C -0.11 -3.58 6.99 40.82 0.29 -3.30 16 20 C 0.11 2.32 10.27 83.85 0.86 3.18 16 21 N -0.34 -6.83 3.54 -321.73 -1.14 -7.96 16 22 C 0.11 1.27 4.28 46.00 0.20 1.46 16 23 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 24 C -0.16 -1.48 6.88 31.61 0.22 -1.26 16 25 C 0.04 0.33 7.63 72.49 0.55 0.88 16 26 O -0.37 -4.39 11.65 -148.98 -1.74 -6.13 16 27 C 0.04 0.36 7.18 72.48 0.52 0.88 16 28 N -0.08 -2.40 13.78 37.02 0.51 -1.89 16 29 N -0.23 -7.82 12.04 -49.99 -0.60 -8.42 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.05 1.74 4.99 -2.39 -0.01 1.73 16 33 H 0.03 1.29 8.09 -2.39 -0.02 1.27 16 34 H 0.05 1.90 6.45 -2.39 -0.02 1.88 16 35 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 36 H 0.05 2.28 7.39 -2.39 -0.02 2.26 16 37 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.04 1.68 6.67 -2.38 -0.02 1.66 16 39 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.06 2.27 7.05 -2.38 -0.02 2.25 16 41 H 0.41 17.57 7.58 -92.70 -0.70 16.86 16 42 H 0.23 3.37 6.88 -2.91 -0.02 3.35 16 43 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.08 0.97 7.97 -2.39 -0.02 0.95 16 45 H 0.12 0.55 8.14 -2.38 -0.02 0.53 16 46 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.08 0.69 5.97 -2.39 -0.01 0.67 16 48 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -66.31 385.53 3.20 -63.11 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.28 Total: 24.71 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 6.79 Total: 19.25 kcal Atomic # 7 Polarization: -121.52 SS G_CDS: -4.11 Total: -125.63 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -1.80 Total: -27.98 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -66.31 3.20 -63.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156240416.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.753 kcal (2) G-P(sol) polarization free energy of solvation -66.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds