Wall clock time and date at job start Tue Mar 31 2020 20:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46896 * 109.47252 * 2 1 4 4 C 1.46899 * 110.99875 * 292.11213 * 3 2 1 5 5 C 1.50701 * 109.47234 * 289.03540 * 4 3 2 6 6 O 1.21292 * 119.99810 * 354.50968 * 5 4 3 7 7 N 1.34772 * 119.99931 * 174.50647 * 5 4 3 8 8 C 1.37100 * 120.00169 * 180.02562 * 7 5 4 9 9 H 1.08000 * 119.99433 * 359.97438 * 8 7 5 10 10 C 1.38944 * 120.00286 * 179.97438 * 8 7 5 11 11 N 1.31416 * 120.00065 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 120.00142 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.46850 * 89.99898 * 12 10 8 14 14 H 1.48497 * 109.47284 * 210.00145 * 12 10 8 15 15 H 1.48500 * 109.47252 * 330.00609 * 12 10 8 16 16 C 1.46901 * 111.00014 * 56.06510 * 3 2 1 17 17 H 1.09003 * 109.47293 * 291.65646 * 16 3 2 18 18 C 1.53006 * 109.47126 * 171.65860 * 16 3 2 19 19 C 1.53002 * 109.47183 * 51.66106 * 16 3 2 20 20 N 1.46503 * 109.47164 * 53.78415 * 19 16 3 21 21 C 1.34770 * 119.99792 * 184.16885 * 20 19 16 22 22 O 1.21571 * 120.00462 * 359.97438 * 21 20 19 23 23 C 1.47713 * 119.99708 * 179.97438 * 21 20 19 24 24 C 1.41501 * 126.51621 * 179.71315 * 23 21 20 25 25 C 1.35369 * 105.50441 * 179.84314 * 24 23 21 26 26 N 1.35034 * 107.22437 * 0.41587 * 25 24 23 27 27 C 1.46504 * 124.88162 * 179.72569 * 26 25 24 28 28 N 1.28469 * 110.23320 * 359.72333 * 26 25 24 29 29 H 1.09004 * 109.47095 * 62.23591 * 1 2 3 30 30 H 1.09002 * 109.46900 * 182.23583 * 1 2 3 31 31 H 1.08994 * 109.47569 * 302.23518 * 1 2 3 32 32 H 1.08998 * 109.47308 * 239.99513 * 2 1 3 33 33 H 1.09006 * 109.47312 * 119.99707 * 2 1 3 34 34 H 1.08996 * 109.47208 * 49.04037 * 4 3 2 35 35 H 1.09004 * 109.47460 * 169.03835 * 4 3 2 36 36 H 0.97003 * 120.00228 * 359.97438 * 7 5 4 37 37 H 0.97000 * 120.00088 * 179.97438 * 11 10 8 38 38 H 1.09004 * 109.46973 * 60.00176 * 18 16 3 39 39 H 1.08999 * 109.46850 * 179.97438 * 18 16 3 40 40 H 1.08995 * 109.47414 * 300.00282 * 18 16 3 41 41 H 1.09002 * 109.47227 * 173.78684 * 19 16 3 42 42 H 1.08999 * 109.46997 * 293.78458 * 19 16 3 43 43 H 0.96995 * 119.99719 * 4.16458 * 20 19 16 44 44 H 1.08001 * 127.25011 * 359.97438 * 24 23 21 45 45 H 1.07997 * 126.38603 * 180.14093 * 25 24 23 46 46 H 1.08996 * 109.47161 * 269.96870 * 27 26 25 47 47 H 1.08994 * 109.47238 * 29.97630 * 27 26 25 48 48 H 1.09007 * 109.46878 * 149.97456 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.7084 2.0533 -1.2706 5 6 2.5720 1.4800 -2.3645 6 8 3.4366 0.6733 -2.0946 7 7 2.3835 1.8637 -3.6426 8 6 3.1688 1.3418 -4.6379 9 1 3.9387 0.6235 -4.3976 10 6 2.9741 1.7369 -5.9557 11 7 3.7272 1.2370 -6.9097 12 14 1.6421 2.9787 -6.3714 13 1 2.2061 4.3508 -6.3043 14 1 1.1336 2.7190 -7.7423 15 1 0.5275 2.8536 -5.3981 16 6 1.4733 2.1365 1.1378 17 1 0.4015 2.2780 0.9989 18 6 2.1608 3.5006 1.2253 19 6 1.7214 1.3566 2.4306 20 7 3.1469 1.0376 2.5425 21 6 3.5892 0.2782 3.5643 22 8 2.8055 -0.1417 4.3934 23 6 5.0264 -0.0438 3.6769 24 6 5.6387 -0.8195 4.6897 25 6 6.9560 -0.8453 4.3791 26 7 7.1155 -0.1183 3.2524 27 6 8.3958 0.1129 2.5787 28 7 5.9832 0.3413 2.8562 29 1 -0.3633 0.4787 -0.9094 30 1 -0.3633 -1.0269 0.0401 31 1 -0.3634 0.5481 0.8692 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.6583 1.8957 -1.5163 35 1 1.9030 3.1217 -1.1764 36 1 1.6918 2.5086 -3.8585 37 1 3.5911 1.5126 -7.8297 38 1 1.9840 4.0563 0.3044 39 1 1.7550 4.0584 2.0693 40 1 3.2325 3.3592 1.3643 41 1 1.4164 1.9618 3.2843 42 1 1.1426 0.4331 2.4145 43 1 3.7723 1.3729 1.8812 44 1 5.1563 -1.2931 5.5319 45 1 7.7349 -1.3492 4.9321 46 1 8.8582 1.0159 2.9772 47 1 9.0548 -0.7384 2.7489 48 1 8.2267 0.2332 1.5086 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156890675.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:04 Heat of formation + Delta-G solvation = 30.579454 kcal Electronic energy + Delta-G solvation = -29883.130385 eV Core-core repulsion = 25782.983948 eV Total energy + Delta-G solvation = -4100.146437 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.69700 -39.85530 -38.79768 -37.44901 -34.46314 -33.82059 -33.55918 -31.83272 -31.63491 -30.82920 -29.90572 -27.87715 -26.89488 -26.03910 -24.01749 -23.23440 -22.33929 -21.57157 -20.00460 -19.67024 -19.07686 -18.07353 -17.92751 -16.63766 -16.61004 -16.36271 -15.82210 -15.66373 -15.16630 -14.92150 -14.53341 -14.27044 -14.14923 -13.88789 -13.60613 -13.33042 -13.16148 -13.04736 -13.00844 -12.78727 -12.77486 -12.45181 -12.37249 -12.29834 -11.87364 -11.63118 -11.54879 -11.35024 -11.18486 -10.96101 -10.61955 -10.54918 -10.43298 -10.08716 -9.95932 -9.51015 -9.38265 -9.19151 -8.87669 -8.53452 -8.14610 -7.92320 -6.29019 -3.79978 1.57863 2.04238 2.34375 3.03171 3.07307 3.15581 3.28010 3.50758 3.79550 3.90390 4.11782 4.24350 4.63004 4.67371 4.76967 4.82528 4.85892 4.97944 5.14663 5.16831 5.23648 5.25185 5.33082 5.40029 5.48466 5.54262 5.56510 5.59709 5.65629 5.67110 5.77722 5.83471 5.91728 5.97729 6.09797 6.21981 6.25299 6.29037 6.49106 6.55640 6.61919 7.19298 7.32767 7.58556 7.61612 7.90058 8.17553 8.32819 8.63767 8.98568 9.45766 9.88486 10.84389 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012344 B = 0.002976 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.768568 B = 9407.750387 C =10895.113350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.048 3.952 3 N -0.504 5.504 4 C 0.035 3.965 5 C 0.455 3.545 6 O -0.555 6.555 7 N -0.595 5.595 8 C -0.302 4.302 9 H 0.119 0.881 10 C 0.040 3.960 11 N -0.884 5.884 12 Si 0.879 3.121 13 H -0.271 1.271 14 H -0.278 1.278 15 H -0.270 1.270 16 C 0.062 3.938 17 H 0.059 0.941 18 C -0.148 4.148 19 C 0.127 3.873 20 N -0.699 5.699 21 C 0.603 3.397 22 O -0.546 6.546 23 C -0.018 4.018 24 C -0.181 4.181 25 C -0.024 4.024 26 N -0.284 5.284 27 C 0.085 3.915 28 N -0.250 5.250 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.369 0.631 37 H 0.272 0.728 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.419 0.581 44 H 0.161 0.839 45 H 0.181 0.819 46 H 0.084 0.916 47 H 0.095 0.905 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.467 2.007 21.067 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.080 4.080 3 N -0.228 5.228 4 C -0.096 4.096 5 C 0.241 3.759 6 O -0.436 6.436 7 N -0.235 5.235 8 C -0.430 4.430 9 H 0.136 0.864 10 C -0.162 4.162 11 N -0.524 5.524 12 Si 0.706 3.294 13 H -0.197 1.197 14 H -0.203 1.203 15 H -0.196 1.196 16 C -0.046 4.046 17 H 0.077 0.923 18 C -0.206 4.206 19 C 0.003 3.997 20 N -0.351 5.351 21 C 0.388 3.612 22 O -0.423 6.423 23 C -0.179 4.179 24 C -0.210 4.210 25 C -0.166 4.166 26 N -0.072 5.072 27 C -0.055 4.055 28 N -0.086 5.086 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.201 0.799 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.257 0.743 44 H 0.178 0.822 45 H 0.198 0.802 46 H 0.103 0.897 47 H 0.114 0.886 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.383 1.785 20.611 20.825 hybrid contribution -1.656 0.665 -0.367 1.821 sum 0.728 2.449 20.244 20.404 Atomic orbital electron populations 1.22489 0.98918 1.02332 1.01528 1.22247 0.91801 0.89771 1.04162 1.61826 1.58619 1.01867 1.00527 1.22012 0.97950 0.99544 0.90125 1.19659 0.87359 0.86076 0.82816 1.90563 1.35323 1.35674 1.82034 1.42224 1.33593 1.41072 1.06641 1.19409 1.14588 1.23842 0.85203 0.86353 1.25020 0.97746 0.98009 0.95438 1.69623 1.38877 1.43272 1.00679 0.86685 0.81857 0.82045 0.78859 1.19670 1.20284 1.19576 1.21957 0.97906 0.94199 0.90568 0.92319 1.21915 1.01787 0.95049 1.01819 1.21452 0.82074 0.99757 0.96429 1.45741 1.09693 1.51878 1.27822 1.16879 0.84859 0.78143 0.81353 1.90764 1.55493 1.54003 1.41999 1.21938 0.93801 1.05226 0.96896 1.21755 0.92490 1.04642 1.02065 1.22849 0.98933 1.02598 0.92227 1.45451 1.06970 1.35667 1.19137 1.22214 0.79811 1.03551 0.99965 1.73637 0.91202 1.19872 1.23925 0.92542 0.92140 0.92706 0.88990 0.90730 0.93035 0.88966 0.79861 0.91705 0.91992 0.92140 0.91534 0.91139 0.90910 0.74337 0.82185 0.80210 0.89713 0.88648 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.46 9.01 37.16 0.33 -2.12 16 2 C 0.05 0.74 5.18 -3.83 -0.02 0.72 16 3 N -0.50 -7.56 3.64 -228.08 -0.83 -8.39 16 4 C 0.03 0.56 5.22 -4.98 -0.03 0.54 16 5 C 0.46 10.11 7.32 -10.99 -0.08 10.03 16 6 O -0.56 -14.56 14.65 5.55 0.08 -14.47 16 7 N -0.60 -14.01 5.09 -10.97 -0.06 -14.06 16 8 C -0.30 -8.47 10.16 -14.93 -0.15 -8.63 16 9 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 10 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 11 N -0.88 -25.82 13.96 55.50 0.77 -25.05 16 12 Si 0.88 19.35 27.74 -169.99 -4.71 14.64 16 13 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 16 C 0.06 0.73 1.68 -67.71 -0.11 0.61 16 17 H 0.06 0.62 6.69 -51.93 -0.35 0.27 16 18 C -0.15 -1.57 9.00 37.16 0.33 -1.23 16 19 C 0.13 1.53 4.40 -4.04 -0.02 1.52 16 20 N -0.70 -9.61 4.81 -61.29 -0.29 -9.90 16 21 C 0.60 9.20 7.82 -12.39 -0.10 9.11 16 22 O -0.55 -9.46 16.93 5.30 0.09 -9.37 16 23 C -0.02 -0.26 7.13 -82.76 -0.59 -0.85 16 24 C -0.18 -2.13 10.81 -39.36 -0.43 -2.56 16 25 C -0.02 -0.22 11.46 -17.17 -0.20 -0.41 16 26 N -0.28 -2.98 3.70 -68.13 -0.25 -3.23 16 27 C 0.08 0.52 11.31 59.85 0.68 1.20 16 28 N -0.25 -3.47 11.67 33.42 0.39 -3.08 16 29 H 0.06 0.74 6.51 -51.93 -0.34 0.40 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.60 5.76 -51.93 -0.30 0.31 16 32 H 0.09 1.76 6.44 -51.93 -0.33 1.42 16 33 H 0.07 1.16 6.34 -51.93 -0.33 0.83 16 34 H 0.05 0.75 6.19 -51.93 -0.32 0.43 16 35 H 0.09 1.31 5.87 -51.93 -0.30 1.00 16 36 H 0.37 7.66 5.76 -40.82 -0.24 7.43 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.06 0.65 6.24 -51.93 -0.32 0.32 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.78 7.18 -51.93 -0.37 0.40 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.93 6.05 -51.93 -0.31 0.62 16 43 H 0.42 6.08 7.03 -40.82 -0.29 5.79 16 44 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 45 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.09 0.31 8.13 -51.93 -0.42 -0.11 16 48 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 385.61 15.07 5.81 5.81 Total: -1.00 -35.97 385.61 -6.21 -42.18 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -6.74 Total: 16.01 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -0.47 Total: 8.92 kcal Atomic # 7 Polarization: -63.44 SS G_CDS: -0.27 Total: -63.71 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: 0.17 Total: -23.85 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.71 Total: 14.64 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.97 -6.21 -42.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156890675.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.759 kcal (2) G-P(sol) polarization free energy of solvation -35.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds