Wall clock time and date at job start Tue Mar 31 2020 20:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46896 * 109.47252 * 2 1 4 4 C 1.46899 * 110.99875 * 292.11213 * 3 2 1 5 5 C 1.50701 * 109.47234 * 289.03540 * 4 3 2 6 6 O 1.21292 * 119.99810 * 354.50968 * 5 4 3 7 7 N 1.34772 * 119.99931 * 174.50647 * 5 4 3 8 8 C 1.37100 * 120.00169 * 180.02562 * 7 5 4 9 9 H 1.08000 * 119.99433 * 359.97438 * 8 7 5 10 10 C 1.38944 * 120.00286 * 179.97438 * 8 7 5 11 11 N 1.31416 * 120.00065 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 120.00142 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.46850 * 89.99898 * 12 10 8 14 14 H 1.48497 * 109.47284 * 210.00145 * 12 10 8 15 15 H 1.48500 * 109.47252 * 330.00609 * 12 10 8 16 16 C 1.46901 * 111.00014 * 56.06510 * 3 2 1 17 17 H 1.09003 * 109.47293 * 291.65646 * 16 3 2 18 18 C 1.53006 * 109.47126 * 171.65860 * 16 3 2 19 19 C 1.53002 * 109.47183 * 51.66106 * 16 3 2 20 20 N 1.46503 * 109.47164 * 53.78415 * 19 16 3 21 21 C 1.34770 * 119.99792 * 184.16885 * 20 19 16 22 22 O 1.21571 * 120.00462 * 359.97438 * 21 20 19 23 23 C 1.47713 * 119.99708 * 179.97438 * 21 20 19 24 24 C 1.41501 * 126.51621 * 179.71315 * 23 21 20 25 25 C 1.35369 * 105.50441 * 179.84314 * 24 23 21 26 26 N 1.35034 * 107.22437 * 0.41587 * 25 24 23 27 27 C 1.46504 * 124.88162 * 179.72569 * 26 25 24 28 28 N 1.28469 * 110.23320 * 359.72333 * 26 25 24 29 29 H 1.09004 * 109.47095 * 62.23591 * 1 2 3 30 30 H 1.09002 * 109.46900 * 182.23583 * 1 2 3 31 31 H 1.08994 * 109.47569 * 302.23518 * 1 2 3 32 32 H 1.08998 * 109.47308 * 239.99513 * 2 1 3 33 33 H 1.09006 * 109.47312 * 119.99707 * 2 1 3 34 34 H 1.08996 * 109.47208 * 49.04037 * 4 3 2 35 35 H 1.09004 * 109.47460 * 169.03835 * 4 3 2 36 36 H 0.97003 * 120.00228 * 359.97438 * 7 5 4 37 37 H 0.97000 * 120.00088 * 179.97438 * 11 10 8 38 38 H 1.09004 * 109.46973 * 60.00176 * 18 16 3 39 39 H 1.08999 * 109.46850 * 179.97438 * 18 16 3 40 40 H 1.08995 * 109.47414 * 300.00282 * 18 16 3 41 41 H 1.09002 * 109.47227 * 173.78684 * 19 16 3 42 42 H 1.08999 * 109.46997 * 293.78458 * 19 16 3 43 43 H 0.96995 * 119.99719 * 4.16458 * 20 19 16 44 44 H 1.08001 * 127.25011 * 359.97438 * 24 23 21 45 45 H 1.07997 * 126.38603 * 180.14093 * 25 24 23 46 46 H 1.08996 * 109.47161 * 269.96870 * 27 26 25 47 47 H 1.08994 * 109.47238 * 29.97630 * 27 26 25 48 48 H 1.09007 * 109.46878 * 149.97456 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.7084 2.0533 -1.2706 5 6 2.5720 1.4800 -2.3645 6 8 3.4366 0.6733 -2.0946 7 7 2.3835 1.8637 -3.6426 8 6 3.1688 1.3418 -4.6379 9 1 3.9387 0.6235 -4.3976 10 6 2.9741 1.7369 -5.9557 11 7 3.7272 1.2370 -6.9097 12 14 1.6421 2.9787 -6.3714 13 1 2.2061 4.3508 -6.3043 14 1 1.1336 2.7190 -7.7423 15 1 0.5275 2.8536 -5.3981 16 6 1.4733 2.1365 1.1378 17 1 0.4015 2.2780 0.9989 18 6 2.1608 3.5006 1.2253 19 6 1.7214 1.3566 2.4306 20 7 3.1469 1.0376 2.5425 21 6 3.5892 0.2782 3.5643 22 8 2.8055 -0.1417 4.3934 23 6 5.0264 -0.0438 3.6769 24 6 5.6387 -0.8195 4.6897 25 6 6.9560 -0.8453 4.3791 26 7 7.1155 -0.1183 3.2524 27 6 8.3958 0.1129 2.5787 28 7 5.9832 0.3413 2.8562 29 1 -0.3633 0.4787 -0.9094 30 1 -0.3633 -1.0269 0.0401 31 1 -0.3634 0.5481 0.8692 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.6583 1.8957 -1.5163 35 1 1.9030 3.1217 -1.1764 36 1 1.6918 2.5086 -3.8585 37 1 3.5911 1.5126 -7.8297 38 1 1.9840 4.0563 0.3044 39 1 1.7550 4.0584 2.0693 40 1 3.2325 3.3592 1.3643 41 1 1.4164 1.9618 3.2843 42 1 1.1426 0.4331 2.4145 43 1 3.7723 1.3729 1.8812 44 1 5.1563 -1.2931 5.5319 45 1 7.7349 -1.3492 4.9321 46 1 8.8582 1.0159 2.9772 47 1 9.0548 -0.7384 2.7489 48 1 8.2267 0.2332 1.5086 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156890675.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:03 Heat of formation + Delta-G solvation = 1.218393 kcal Electronic energy + Delta-G solvation = -29884.403576 eV Core-core repulsion = 25782.983948 eV Total energy + Delta-G solvation = -4101.419628 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.55346 -41.07344 -40.23481 -38.92798 -36.00975 -35.44010 -34.35348 -33.71491 -32.82200 -31.72627 -31.13402 -28.69244 -28.20869 -27.15241 -25.71885 -24.22637 -23.46043 -22.39574 -21.31043 -21.01088 -20.65242 -19.77279 -18.81759 -17.87989 -17.60635 -17.33494 -17.18501 -16.80752 -16.70336 -16.36567 -15.76626 -15.49681 -15.32107 -15.06521 -14.85764 -14.68387 -14.52796 -14.23702 -13.97777 -13.96168 -13.69847 -13.62413 -13.39527 -13.36365 -13.08767 -13.05639 -12.73590 -12.52269 -12.39704 -12.35602 -11.97369 -11.88489 -11.70300 -11.59754 -11.40880 -11.24736 -10.34881 -10.29626 -10.19969 -10.09753 -9.87421 -9.12559 -8.38935 -5.98905 0.57334 1.23267 1.30554 1.36310 1.44709 1.64437 2.02670 2.24290 2.26201 2.42315 2.63689 3.17386 3.27336 3.44046 3.71086 3.98824 4.01926 4.05288 4.08087 4.22069 4.30061 4.35178 4.39847 4.42339 4.48036 4.52902 4.53508 4.67035 4.69663 4.74910 4.77835 4.81425 4.89795 5.02354 5.06096 5.09113 5.29607 5.37356 5.40800 5.47140 5.56210 5.92280 5.93570 6.06117 6.22629 6.49481 6.63881 6.92934 6.94409 7.20807 7.44873 8.03895 8.79055 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012344 B = 0.002976 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.768568 B = 9407.750387 C =10895.113350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.055 3.945 3 N -0.523 5.523 4 C 0.048 3.952 5 C 0.455 3.545 6 O -0.603 6.603 7 N -0.596 5.596 8 C -0.323 4.323 9 H 0.053 0.947 10 C -0.017 4.017 11 N -0.938 5.938 12 Si 0.964 3.036 13 H -0.256 1.256 14 H -0.277 1.277 15 H -0.232 1.232 16 C 0.069 3.931 17 H 0.086 0.914 18 C -0.146 4.146 19 C 0.125 3.875 20 N -0.695 5.695 21 C 0.598 3.402 22 O -0.575 6.575 23 C -0.050 4.050 24 C -0.206 4.206 25 C 0.000 4.000 26 N -0.284 5.284 27 C 0.075 3.925 28 N -0.284 5.284 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.123 0.877 36 H 0.388 0.612 37 H 0.278 0.722 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.049 0.951 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.414 0.586 44 H 0.167 0.833 45 H 0.229 0.771 46 H 0.104 0.896 47 H 0.131 0.869 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.292 4.343 22.547 22.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.073 4.073 3 N -0.248 5.248 4 C -0.082 4.082 5 C 0.242 3.758 6 O -0.487 6.487 7 N -0.238 5.238 8 C -0.452 4.452 9 H 0.072 0.928 10 C -0.215 4.215 11 N -0.579 5.579 12 Si 0.784 3.216 13 H -0.181 1.181 14 H -0.203 1.203 15 H -0.155 1.155 16 C -0.038 4.038 17 H 0.104 0.896 18 C -0.204 4.204 19 C 0.002 3.998 20 N -0.346 5.346 21 C 0.383 3.617 22 O -0.455 6.455 23 C -0.209 4.209 24 C -0.234 4.234 25 C -0.143 4.143 26 N -0.072 5.072 27 C -0.063 4.063 28 N -0.122 5.122 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.141 0.859 36 H 0.223 0.777 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.251 0.749 44 H 0.184 0.816 45 H 0.246 0.754 46 H 0.122 0.878 47 H 0.149 0.851 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.611 4.143 22.104 22.497 hybrid contribution -0.895 -0.182 -0.763 1.190 sum -0.285 3.961 21.341 21.707 Atomic orbital electron populations 1.22400 0.96232 1.03123 1.02581 1.22019 0.93911 0.89908 1.01490 1.61713 1.60040 1.01870 1.01171 1.21920 0.97625 1.00515 0.88183 1.20919 0.86801 0.84506 0.83540 1.90549 1.37567 1.37621 1.82922 1.42047 1.33787 1.41731 1.06274 1.18971 1.14875 1.24081 0.87308 0.92848 1.26085 1.00713 1.00305 0.94356 1.69811 1.41338 1.45326 1.01428 0.85379 0.78628 0.78447 0.79153 1.18083 1.20265 1.15505 1.22038 0.99343 0.93991 0.88478 0.89624 1.21926 1.00754 0.94491 1.03204 1.21592 0.80998 0.99821 0.97418 1.45787 1.10402 1.51246 1.27119 1.17137 0.85414 0.77910 0.81204 1.90723 1.56363 1.55321 1.43061 1.22027 0.93603 1.06896 0.98353 1.22027 0.93788 1.05311 1.02268 1.23524 0.99013 1.00660 0.91121 1.45916 1.07126 1.34743 1.19452 1.22590 0.78549 1.06212 0.98972 1.73573 0.92397 1.21378 1.24848 0.92379 0.91796 0.90346 0.93574 0.91524 0.90206 0.85899 0.77678 0.91287 0.91293 0.89748 0.93235 0.89557 0.91635 0.74867 0.81594 0.75430 0.87757 0.85066 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.31 9.01 71.98 0.65 -3.67 16 2 C 0.05 1.70 5.18 86.30 0.45 2.15 16 3 N -0.52 -15.14 3.64 -875.51 -3.18 -18.32 16 4 C 0.05 1.45 5.22 85.56 0.45 1.90 16 5 C 0.45 20.39 7.32 87.66 0.64 21.03 16 6 O -0.60 -33.43 14.65 -3.07 -0.04 -33.48 16 7 N -0.60 -28.00 5.09 -306.99 -1.56 -29.57 16 8 C -0.32 -18.97 10.16 84.04 0.85 -18.11 16 9 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 10 C -0.02 -0.92 5.50 84.92 0.47 -0.45 16 11 N -0.94 -56.88 13.96 21.66 0.30 -56.58 16 12 Si 0.96 38.84 27.74 68.60 1.90 40.74 16 13 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 14 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 15 H -0.23 -7.84 6.52 99.48 0.65 -7.19 16 16 C 0.07 1.43 1.68 44.92 0.08 1.50 16 17 H 0.09 1.39 6.69 -2.39 -0.02 1.37 16 18 C -0.15 -2.66 9.00 71.98 0.65 -2.01 16 19 C 0.13 2.87 4.40 86.38 0.38 3.25 16 20 N -0.69 -19.46 4.81 -466.10 -2.24 -21.70 16 21 C 0.60 18.94 7.82 86.75 0.68 19.62 16 22 O -0.58 -20.54 16.93 -3.94 -0.07 -20.61 16 23 C -0.05 -1.49 7.13 42.46 0.30 -1.18 16 24 C -0.21 -4.82 10.81 22.41 0.24 -4.58 16 25 C 0.00 0.00 11.46 83.54 0.96 0.95 16 26 N -0.28 -5.73 3.70 -369.45 -1.37 -7.09 16 27 C 0.08 0.82 11.31 127.77 1.44 2.26 16 28 N -0.28 -8.12 11.67 -48.18 -0.56 -8.68 16 29 H 0.06 1.34 6.51 -2.39 -0.02 1.33 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 1.47 5.76 -2.39 -0.01 1.45 16 32 H 0.05 1.85 6.44 -2.39 -0.02 1.84 16 33 H 0.07 2.14 6.34 -2.38 -0.02 2.13 16 34 H 0.08 2.01 6.19 -2.39 -0.01 2.00 16 35 H 0.12 3.00 5.87 -2.38 -0.01 2.99 16 36 H 0.39 15.08 5.76 -92.71 -0.53 14.54 16 37 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 38 H 0.07 1.17 6.24 -2.38 -0.01 1.15 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.05 1.08 7.18 -2.39 -0.02 1.07 16 41 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.07 1.61 6.05 -2.39 -0.01 1.60 16 43 H 0.41 12.46 7.03 -92.71 -0.65 11.81 16 44 H 0.17 3.49 8.06 -2.91 -0.02 3.47 16 45 H 0.23 1.29 8.06 -2.91 -0.02 1.26 16 46 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.13 0.47 8.13 -2.39 -0.02 0.45 16 48 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -87.47 385.61 1.19 -86.29 By element: Atomic # 1 Polarization: 46.56 SS G_CDS: -0.23 Total: 46.33 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: 8.23 Total: 22.66 kcal Atomic # 7 Polarization: -133.32 SS G_CDS: -8.61 Total: -141.93 kcal Atomic # 8 Polarization: -53.98 SS G_CDS: -0.11 Total: -54.09 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 1.90 Total: 40.74 kcal Total: -87.47 1.19 -86.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156890675.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.504 kcal (2) G-P(sol) polarization free energy of solvation -87.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds