Wall clock time and date at job start Tue Mar 31 2020 20:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.47056 * 2 1 4 4 C 1.46894 * 111.00398 * 291.73779 * 3 2 1 5 5 C 1.50708 * 109.46962 * 289.06399 * 4 3 2 6 6 O 1.21295 * 119.99789 * 354.55510 * 5 4 3 7 7 N 1.34767 * 120.00238 * 174.55927 * 5 4 3 8 8 C 1.37099 * 120.00408 * 180.02562 * 7 5 4 9 9 H 1.08006 * 119.99568 * 359.97438 * 8 7 5 10 10 C 1.38945 * 120.00435 * 179.97438 * 8 7 5 11 11 N 1.31410 * 120.00046 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 119.99991 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47121 * 89.99565 * 12 10 8 14 14 H 1.48497 * 109.46977 * 209.99577 * 12 10 8 15 15 H 1.48499 * 109.46825 * 330.00079 * 12 10 8 16 16 C 1.46906 * 110.99812 * 55.69069 * 3 2 1 17 17 H 1.09003 * 109.47020 * 291.59121 * 16 3 2 18 18 C 1.52994 * 109.47177 * 171.58849 * 16 3 2 19 19 C 1.52999 * 109.47205 * 51.58711 * 16 3 2 20 20 N 1.46496 * 109.47002 * 55.92609 * 19 16 3 21 21 C 1.34780 * 120.00034 * 174.91187 * 20 19 16 22 22 O 1.21284 * 119.99942 * 359.97438 * 21 20 19 23 23 C 1.50693 * 120.00146 * 179.72759 * 21 20 19 24 24 N 1.46502 * 109.47316 * 180.27180 * 23 21 20 25 25 C 1.36887 * 126.39465 * 89.99593 * 24 23 21 26 26 C 1.34670 * 106.81596 * 180.02562 * 25 24 23 27 27 N 1.34124 * 108.02223 * 0.02562 * 26 25 24 28 28 C 1.30508 * 109.25514 * 359.72052 * 27 26 25 29 29 H 1.08999 * 109.47121 * 62.18977 * 1 2 3 30 30 H 1.08998 * 109.47304 * 182.18860 * 1 2 3 31 31 H 1.08999 * 109.47221 * 302.19252 * 1 2 3 32 32 H 1.09002 * 109.46846 * 240.00567 * 2 1 3 33 33 H 1.08995 * 109.47233 * 120.00191 * 2 1 3 34 34 H 1.09000 * 109.47453 * 49.05932 * 4 3 2 35 35 H 1.08997 * 109.47473 * 169.06765 * 4 3 2 36 36 H 0.97006 * 120.00100 * 359.97438 * 7 5 4 37 37 H 0.97002 * 120.00053 * 179.97438 * 11 10 8 38 38 H 1.08994 * 109.47308 * 299.99801 * 18 16 3 39 39 H 1.08999 * 109.47150 * 60.00041 * 18 16 3 40 40 H 1.09003 * 109.47360 * 179.97438 * 18 16 3 41 41 H 1.09006 * 109.47148 * 295.92687 * 19 16 3 42 42 H 1.09003 * 109.47198 * 175.93084 * 19 16 3 43 43 H 0.96996 * 120.00111 * 354.91194 * 20 19 16 44 44 H 1.08997 * 109.47459 * 300.27445 * 23 21 20 45 45 H 1.09003 * 109.47252 * 60.27715 * 23 21 20 46 46 H 1.08000 * 126.58856 * 359.97438 * 25 24 23 47 47 H 1.08003 * 125.98643 * 180.02562 * 26 25 24 48 48 H 1.08003 * 125.64957 * 180.28925 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7163 2.0507 -1.2738 5 6 2.5862 1.4746 -2.3613 6 8 3.4483 0.6675 -2.0845 7 7 2.4063 1.8562 -3.6412 8 6 3.1973 1.3318 -4.6306 9 1 3.9649 0.6130 -4.3842 10 6 3.0115 1.7248 -5.9503 11 7 3.7700 1.2224 -6.8985 12 14 1.6844 2.9685 -6.3765 13 1 2.2506 4.3396 -6.3083 14 1 1.1840 2.7073 -7.7500 15 1 0.5637 2.8472 -5.4098 16 6 1.4663 2.1390 1.1329 17 1 0.3955 2.2812 0.9864 18 6 2.1542 3.5026 1.2227 19 6 1.7048 1.3611 2.4285 20 7 3.1360 1.0854 2.5761 21 6 3.5969 0.4980 3.6982 22 8 2.8269 0.1981 4.5860 23 6 5.0683 0.2088 3.8475 24 7 5.3110 -0.4328 5.1420 25 6 5.2981 -1.7777 5.3970 26 6 5.5682 -1.9283 6.7077 27 7 5.7408 -0.7087 7.2386 28 6 5.5938 0.1917 6.3054 29 1 -0.3633 0.4794 -0.9090 30 1 -0.3634 -1.0269 0.0392 31 1 -0.3633 0.5475 0.8697 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 0.6676 1.8928 -1.5256 35 1 1.9108 3.1191 -1.1808 36 1 1.7167 2.5015 -3.8627 37 1 3.6401 1.4965 -7.8199 38 1 3.2249 3.3604 1.3693 39 1 1.9843 4.0568 0.2997 40 1 1.7433 4.0623 2.0630 41 1 1.1552 0.4203 2.3939 42 1 1.3593 1.9526 3.2764 43 1 3.7519 1.3255 1.8663 44 1 5.3911 -0.4559 3.0463 45 1 5.6293 1.1418 3.7937 46 1 5.1071 -2.5663 4.6842 47 1 5.6343 -2.8667 7.2383 48 1 5.6813 1.2595 6.4416 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157287416.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:18 Heat of formation + Delta-G solvation = 16.627720 kcal Electronic energy + Delta-G solvation = -29503.357399 eV Core-core repulsion = 25402.605970 eV Total energy + Delta-G solvation = -4100.751429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.21432 -40.20014 -39.14782 -37.65823 -34.76411 -34.16237 -33.94430 -32.03310 -31.74415 -30.25241 -29.62228 -28.32815 -27.03738 -25.99085 -24.10969 -22.93234 -21.67877 -21.48573 -20.70205 -19.88150 -19.22881 -18.21014 -17.88966 -17.62714 -16.76990 -16.12259 -15.92283 -15.50115 -15.27190 -15.00786 -14.84398 -14.51548 -14.25620 -14.02648 -13.87877 -13.62297 -13.45478 -13.32724 -13.19764 -13.07871 -12.87474 -12.51788 -12.45645 -12.40922 -12.02194 -11.77843 -11.75760 -11.52765 -11.27797 -10.79778 -10.65858 -10.62585 -10.58060 -10.14602 -10.04798 -9.66908 -9.61162 -9.28724 -8.69117 -8.63383 -8.25015 -8.11965 -6.37824 -3.89473 1.81690 2.25079 2.41241 2.95552 3.00137 3.03028 3.09223 3.11145 3.66514 3.70493 4.03493 4.32546 4.37976 4.48266 4.56477 4.65219 4.67265 4.72171 4.79608 4.99309 5.11455 5.16950 5.23080 5.29953 5.32263 5.37537 5.40391 5.49336 5.54470 5.57188 5.66471 5.74832 5.82466 5.91896 6.04177 6.05593 6.08295 6.15778 6.33610 6.58112 6.94004 6.99137 7.12026 7.26453 7.51264 7.89823 7.93394 8.07213 8.53111 8.88448 9.35591 9.76202 10.75218 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019014 B = 0.002278 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.249020 B =12289.089389 C =12918.882633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.047 3.953 3 N -0.507 5.507 4 C 0.035 3.965 5 C 0.454 3.546 6 O -0.559 6.559 7 N -0.592 5.592 8 C -0.304 4.304 9 H 0.119 0.881 10 C 0.041 3.959 11 N -0.881 5.881 12 Si 0.879 3.121 13 H -0.271 1.271 14 H -0.277 1.277 15 H -0.271 1.271 16 C 0.062 3.938 17 H 0.060 0.940 18 C -0.147 4.147 19 C 0.129 3.871 20 N -0.707 5.707 21 C 0.494 3.506 22 O -0.531 6.531 23 C 0.085 3.915 24 N -0.444 5.444 25 C -0.044 4.044 26 C -0.032 4.032 27 N -0.496 5.496 28 C 0.191 3.809 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.369 0.631 37 H 0.274 0.726 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.415 0.585 44 H 0.126 0.874 45 H 0.125 0.875 46 H 0.172 0.828 47 H 0.168 0.832 48 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.572 2.952 18.432 19.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.081 4.081 3 N -0.231 5.231 4 C -0.096 4.096 5 C 0.239 3.761 6 O -0.441 6.441 7 N -0.232 5.232 8 C -0.433 4.433 9 H 0.137 0.863 10 C -0.162 4.162 11 N -0.521 5.521 12 Si 0.706 3.294 13 H -0.196 1.196 14 H -0.202 1.202 15 H -0.196 1.196 16 C -0.047 4.047 17 H 0.078 0.922 18 C -0.205 4.205 19 C 0.005 3.995 20 N -0.361 5.361 21 C 0.277 3.723 22 O -0.407 6.407 23 C -0.042 4.042 24 N -0.127 5.127 25 C -0.177 4.177 26 C -0.179 4.179 27 N -0.214 5.214 28 C -0.092 4.092 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.202 0.798 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.253 0.747 44 H 0.144 0.856 45 H 0.143 0.857 46 H 0.190 0.810 47 H 0.186 0.814 48 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.810 2.382 19.771 20.111 hybrid contribution -2.015 0.992 -2.106 3.079 sum -4.825 3.374 17.664 18.620 Atomic orbital electron populations 1.22489 0.98811 1.02435 1.01619 1.22261 0.91978 0.89730 1.04083 1.61858 1.58484 1.01937 1.00805 1.22014 0.98110 0.99558 0.89954 1.19608 0.87459 0.86229 0.82798 1.90545 1.35773 1.35924 1.81852 1.42229 1.33446 1.40798 1.06692 1.19398 1.14616 1.23965 0.85321 0.86297 1.25040 0.97702 0.97955 0.95478 1.69616 1.38543 1.42997 1.00905 0.86685 0.81729 0.82040 0.78980 1.19611 1.20192 1.19611 1.21963 0.98115 0.94207 0.90442 0.92230 1.21896 1.01572 0.95001 1.01988 1.21446 0.81474 1.00002 0.96610 1.45838 1.09855 1.61207 1.19247 1.20689 0.90447 0.78456 0.82688 1.90786 1.57820 1.51516 1.40594 1.21703 0.95081 1.01808 0.85631 1.44994 1.51926 1.06847 1.08911 1.22710 1.10413 0.85031 0.99503 1.22239 1.07388 0.96448 0.91840 1.70274 1.20708 0.99758 1.30672 1.24925 1.04115 0.99795 0.80349 0.92431 0.92068 0.92754 0.88807 0.90868 0.92961 0.88919 0.79816 0.91588 0.91606 0.91895 0.92147 0.91197 0.90868 0.74729 0.85631 0.85741 0.81030 0.81437 0.78189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.13 9.00 37.16 0.33 -1.80 16 2 C 0.05 0.61 5.19 -3.82 -0.02 0.59 16 3 N -0.51 -6.26 3.61 -228.08 -0.82 -7.09 16 4 C 0.03 0.50 5.22 -4.98 -0.03 0.47 16 5 C 0.45 9.25 7.32 -10.99 -0.08 9.17 16 6 O -0.56 -13.46 14.65 5.54 0.08 -13.38 16 7 N -0.59 -13.12 5.09 -10.96 -0.06 -13.17 16 8 C -0.30 -8.17 10.16 -14.93 -0.15 -8.33 16 9 H 0.12 3.67 7.39 -52.48 -0.39 3.28 16 10 C 0.04 1.09 5.50 -17.47 -0.10 0.99 16 11 N -0.88 -24.94 13.96 55.50 0.77 -24.16 16 12 Si 0.88 18.59 27.74 -169.99 -4.72 13.87 16 13 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 14 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 15 H -0.27 -5.18 6.52 56.52 0.37 -4.81 16 16 C 0.06 0.57 1.68 -67.71 -0.11 0.46 16 17 H 0.06 0.52 6.69 -51.93 -0.35 0.18 16 18 C -0.15 -1.21 8.99 37.15 0.33 -0.88 16 19 C 0.13 1.20 4.41 -4.04 -0.02 1.18 16 20 N -0.71 -6.29 4.89 -60.30 -0.29 -6.58 16 21 C 0.49 4.91 7.90 -10.99 -0.09 4.82 16 22 O -0.53 -7.61 16.43 5.55 0.09 -7.52 16 23 C 0.08 0.60 6.63 -5.20 -0.03 0.57 16 24 N -0.44 -4.36 2.24 -119.87 -0.27 -4.63 16 25 C -0.04 -0.45 11.58 -16.56 -0.19 -0.65 16 26 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 16 27 N -0.50 -6.49 11.25 -14.66 -0.16 -6.66 16 28 C 0.19 2.04 12.56 -90.37 -1.14 0.91 16 29 H 0.06 0.67 6.52 -51.93 -0.34 0.33 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.52 5.75 -51.93 -0.30 0.22 16 32 H 0.09 1.56 6.44 -51.93 -0.33 1.23 16 33 H 0.07 0.90 6.41 -51.93 -0.33 0.56 16 34 H 0.05 0.68 6.21 -51.93 -0.32 0.36 16 35 H 0.09 1.14 5.87 -51.93 -0.30 0.84 16 36 H 0.37 7.21 5.76 -40.82 -0.24 6.98 16 37 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 38 H 0.06 0.55 7.23 -51.93 -0.38 0.18 16 39 H 0.06 0.54 6.24 -51.93 -0.32 0.21 16 40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.73 5.93 -51.93 -0.31 0.42 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.42 3.53 7.39 -40.82 -0.30 3.23 16 44 H 0.13 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 47 H 0.17 1.51 8.06 -52.48 -0.42 1.09 16 48 H 0.20 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 385.61 15.07 5.81 5.81 Total: -1.00 -35.56 385.61 -7.82 -43.39 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -6.76 Total: 13.19 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -1.50 Total: 6.93 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: -0.83 Total: -62.29 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: 0.17 Total: -20.90 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -4.72 Total: 13.87 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.56 -7.82 -43.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157287416.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.015 kcal (2) G-P(sol) polarization free energy of solvation -35.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds