Wall clock time and date at job start Tue Mar 31 2020 20:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.47056 * 2 1 4 4 C 1.46894 * 111.00398 * 291.73779 * 3 2 1 5 5 C 1.50708 * 109.46962 * 289.06399 * 4 3 2 6 6 O 1.21295 * 119.99789 * 354.55510 * 5 4 3 7 7 N 1.34767 * 120.00238 * 174.55927 * 5 4 3 8 8 C 1.37099 * 120.00408 * 180.02562 * 7 5 4 9 9 H 1.08006 * 119.99568 * 359.97438 * 8 7 5 10 10 C 1.38945 * 120.00435 * 179.97438 * 8 7 5 11 11 N 1.31410 * 120.00046 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 119.99991 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47121 * 89.99565 * 12 10 8 14 14 H 1.48497 * 109.46977 * 209.99577 * 12 10 8 15 15 H 1.48499 * 109.46825 * 330.00079 * 12 10 8 16 16 C 1.46906 * 110.99812 * 55.69069 * 3 2 1 17 17 H 1.09003 * 109.47020 * 291.59121 * 16 3 2 18 18 C 1.52994 * 109.47177 * 171.58849 * 16 3 2 19 19 C 1.52999 * 109.47205 * 51.58711 * 16 3 2 20 20 N 1.46496 * 109.47002 * 55.92609 * 19 16 3 21 21 C 1.34780 * 120.00034 * 174.91187 * 20 19 16 22 22 O 1.21284 * 119.99942 * 359.97438 * 21 20 19 23 23 C 1.50693 * 120.00146 * 179.72759 * 21 20 19 24 24 N 1.46502 * 109.47316 * 180.27180 * 23 21 20 25 25 C 1.36887 * 126.39465 * 89.99593 * 24 23 21 26 26 C 1.34670 * 106.81596 * 180.02562 * 25 24 23 27 27 N 1.34124 * 108.02223 * 0.02562 * 26 25 24 28 28 C 1.30508 * 109.25514 * 359.72052 * 27 26 25 29 29 H 1.08999 * 109.47121 * 62.18977 * 1 2 3 30 30 H 1.08998 * 109.47304 * 182.18860 * 1 2 3 31 31 H 1.08999 * 109.47221 * 302.19252 * 1 2 3 32 32 H 1.09002 * 109.46846 * 240.00567 * 2 1 3 33 33 H 1.08995 * 109.47233 * 120.00191 * 2 1 3 34 34 H 1.09000 * 109.47453 * 49.05932 * 4 3 2 35 35 H 1.08997 * 109.47473 * 169.06765 * 4 3 2 36 36 H 0.97006 * 120.00100 * 359.97438 * 7 5 4 37 37 H 0.97002 * 120.00053 * 179.97438 * 11 10 8 38 38 H 1.08994 * 109.47308 * 299.99801 * 18 16 3 39 39 H 1.08999 * 109.47150 * 60.00041 * 18 16 3 40 40 H 1.09003 * 109.47360 * 179.97438 * 18 16 3 41 41 H 1.09006 * 109.47148 * 295.92687 * 19 16 3 42 42 H 1.09003 * 109.47198 * 175.93084 * 19 16 3 43 43 H 0.96996 * 120.00111 * 354.91194 * 20 19 16 44 44 H 1.08997 * 109.47459 * 300.27445 * 23 21 20 45 45 H 1.09003 * 109.47252 * 60.27715 * 23 21 20 46 46 H 1.08000 * 126.58856 * 359.97438 * 25 24 23 47 47 H 1.08003 * 125.98643 * 180.02562 * 26 25 24 48 48 H 1.08003 * 125.64957 * 180.28925 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7163 2.0507 -1.2738 5 6 2.5862 1.4746 -2.3613 6 8 3.4483 0.6675 -2.0845 7 7 2.4063 1.8562 -3.6412 8 6 3.1973 1.3318 -4.6306 9 1 3.9649 0.6130 -4.3842 10 6 3.0115 1.7248 -5.9503 11 7 3.7700 1.2224 -6.8985 12 14 1.6844 2.9685 -6.3765 13 1 2.2506 4.3396 -6.3083 14 1 1.1840 2.7073 -7.7500 15 1 0.5637 2.8472 -5.4098 16 6 1.4663 2.1390 1.1329 17 1 0.3955 2.2812 0.9864 18 6 2.1542 3.5026 1.2227 19 6 1.7048 1.3611 2.4285 20 7 3.1360 1.0854 2.5761 21 6 3.5969 0.4980 3.6982 22 8 2.8269 0.1981 4.5860 23 6 5.0683 0.2088 3.8475 24 7 5.3110 -0.4328 5.1420 25 6 5.2981 -1.7777 5.3970 26 6 5.5682 -1.9283 6.7077 27 7 5.7408 -0.7087 7.2386 28 6 5.5938 0.1917 6.3054 29 1 -0.3633 0.4794 -0.9090 30 1 -0.3634 -1.0269 0.0392 31 1 -0.3633 0.5475 0.8697 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 0.6676 1.8928 -1.5256 35 1 1.9108 3.1191 -1.1808 36 1 1.7167 2.5015 -3.8627 37 1 3.6401 1.4965 -7.8199 38 1 3.2249 3.3604 1.3693 39 1 1.9843 4.0568 0.2997 40 1 1.7433 4.0623 2.0630 41 1 1.1552 0.4203 2.3939 42 1 1.3593 1.9526 3.2764 43 1 3.7519 1.3255 1.8663 44 1 5.3911 -0.4559 3.0463 45 1 5.6293 1.1418 3.7937 46 1 5.1071 -2.5663 4.6842 47 1 5.6343 -2.8667 7.2383 48 1 5.6813 1.2595 6.4416 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157287416.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:16 Heat of formation + Delta-G solvation = -10.025179 kcal Electronic energy + Delta-G solvation = -29504.513156 eV Core-core repulsion = 25402.605970 eV Total energy + Delta-G solvation = -4101.907186 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.97788 -41.13108 -40.35435 -38.98738 -36.01021 -35.47097 -34.91908 -33.70163 -32.83184 -31.31824 -30.41180 -29.07231 -28.20147 -26.96960 -25.64434 -23.87191 -22.48601 -22.27194 -21.45669 -21.29505 -20.67218 -19.77628 -18.67377 -18.35564 -17.84282 -17.34683 -16.89461 -16.75786 -16.38347 -16.16961 -15.74181 -15.54851 -15.28936 -15.10519 -14.87000 -14.79140 -14.58038 -14.40816 -14.19679 -14.07553 -14.00984 -13.70198 -13.58549 -13.19129 -13.07246 -13.01497 -12.73378 -12.53278 -12.38774 -12.34369 -11.97326 -11.70675 -11.61675 -11.45397 -11.38666 -10.98294 -10.47508 -10.32448 -10.18885 -10.07593 -9.42783 -9.17023 -8.37977 -5.97672 1.05392 1.30893 1.36594 1.44984 1.49736 1.73640 2.03677 2.23820 2.24702 2.35075 2.62385 3.18551 3.27974 3.66868 3.75803 3.81795 3.87796 4.00068 4.03572 4.05634 4.20337 4.22135 4.30121 4.35897 4.43262 4.52336 4.53755 4.58278 4.66969 4.75505 4.78127 4.89269 5.03625 5.06515 5.10137 5.29296 5.29920 5.41564 5.42682 5.56699 5.81295 5.93087 6.04707 6.19438 6.21856 6.52568 6.64235 6.94025 7.13138 7.16192 7.46263 8.04015 8.79608 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019014 B = 0.002278 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.249020 B =12289.089389 C =12918.882633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.053 3.947 3 N -0.517 5.517 4 C 0.047 3.953 5 C 0.456 3.544 6 O -0.601 6.601 7 N -0.597 5.597 8 C -0.320 4.320 9 H 0.057 0.943 10 C -0.018 4.018 11 N -0.937 5.937 12 Si 0.962 3.038 13 H -0.257 1.257 14 H -0.280 1.280 15 H -0.232 1.232 16 C 0.069 3.931 17 H 0.076 0.924 18 C -0.146 4.146 19 C 0.130 3.870 20 N -0.699 5.699 21 C 0.496 3.504 22 O -0.578 6.578 23 C 0.085 3.915 24 N -0.445 5.445 25 C -0.050 4.050 26 C -0.057 4.057 27 N -0.537 5.537 28 C 0.184 3.816 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.124 0.876 36 H 0.387 0.613 37 H 0.277 0.723 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.079 0.921 43 H 0.419 0.581 44 H 0.144 0.856 45 H 0.160 0.840 46 H 0.192 0.808 47 H 0.180 0.820 48 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.869 5.739 19.169 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.075 4.075 3 N -0.242 5.242 4 C -0.084 4.084 5 C 0.244 3.756 6 O -0.484 6.484 7 N -0.240 5.240 8 C -0.449 4.449 9 H 0.075 0.925 10 C -0.216 4.216 11 N -0.578 5.578 12 Si 0.782 3.218 13 H -0.182 1.182 14 H -0.205 1.205 15 H -0.155 1.155 16 C -0.039 4.039 17 H 0.094 0.906 18 C -0.204 4.204 19 C 0.006 3.994 20 N -0.352 5.352 21 C 0.282 3.718 22 O -0.457 6.457 23 C -0.040 4.040 24 N -0.127 5.127 25 C -0.182 4.182 26 C -0.203 4.203 27 N -0.256 5.256 28 C -0.098 4.098 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.141 0.859 36 H 0.222 0.778 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.257 0.743 44 H 0.161 0.839 45 H 0.177 0.823 46 H 0.209 0.791 47 H 0.197 0.803 48 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -5.114 5.183 20.517 21.771 hybrid contribution -1.207 0.024 -2.250 2.554 sum -6.322 5.207 18.267 20.019 Atomic orbital electron populations 1.22420 0.96941 1.02984 1.02320 1.22073 0.93444 0.89930 1.02037 1.61779 1.59503 1.01843 1.01035 1.21915 0.97473 1.00615 0.88352 1.20867 0.86838 0.84523 0.83375 1.90533 1.37708 1.37495 1.82666 1.42079 1.33747 1.41665 1.06478 1.18961 1.14748 1.23932 0.87294 0.92517 1.26075 1.00627 1.00327 0.94582 1.69805 1.41171 1.45296 1.01563 0.85406 0.78744 0.78548 0.79069 1.18154 1.20539 1.15521 1.22010 0.99030 0.94200 0.88661 0.90616 1.21911 1.01378 0.94213 1.02854 1.21429 0.81514 0.99605 0.96833 1.45816 1.09914 1.60513 1.18986 1.21096 0.91284 0.77450 0.82018 1.90773 1.59234 1.53578 1.42157 1.21958 0.93450 1.03722 0.84882 1.45148 1.51280 1.06699 1.09617 1.23086 1.09662 0.85917 0.99573 1.22606 1.08217 0.96753 0.92741 1.70232 1.22309 1.00769 1.32243 1.25492 1.03234 1.00787 0.80317 0.92730 0.91899 0.90699 0.93235 0.90521 0.90661 0.85878 0.77775 0.91360 0.91944 0.91718 0.90353 0.92265 0.90305 0.74294 0.83861 0.82263 0.79144 0.80291 0.75520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.66 9.00 71.98 0.65 -3.01 16 2 C 0.05 1.31 5.19 86.30 0.45 1.76 16 3 N -0.52 -11.54 3.61 -875.52 -3.16 -14.70 16 4 C 0.05 1.20 5.22 85.56 0.45 1.65 16 5 C 0.46 18.34 7.32 87.66 0.64 18.98 16 6 O -0.60 -29.76 14.65 -3.08 -0.05 -29.80 16 7 N -0.60 -26.07 5.09 -306.98 -1.56 -27.63 16 8 C -0.32 -17.81 10.16 84.04 0.85 -16.96 16 9 H 0.06 3.78 7.39 -2.91 -0.02 3.76 16 10 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 11 N -0.94 -55.11 13.96 21.66 0.30 -54.81 16 12 Si 0.96 37.22 27.74 68.60 1.90 39.13 16 13 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 14 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 15 H -0.23 -7.44 6.52 99.48 0.65 -6.80 16 16 C 0.07 1.03 1.68 44.91 0.08 1.10 16 17 H 0.08 0.96 6.69 -2.39 -0.02 0.95 16 18 C -0.15 -1.80 8.99 71.98 0.65 -1.16 16 19 C 0.13 2.08 4.41 86.38 0.38 2.46 16 20 N -0.70 -10.92 4.89 -463.06 -2.26 -13.18 16 21 C 0.50 9.01 7.90 87.65 0.69 9.70 16 22 O -0.58 -15.98 16.43 -3.04 -0.05 -16.03 16 23 C 0.09 1.02 6.63 85.63 0.57 1.59 16 24 N -0.45 -8.16 2.24 -533.15 -1.19 -9.35 16 25 C -0.05 -0.99 11.58 83.09 0.96 -0.03 16 26 C -0.06 -1.31 11.87 83.52 0.99 -0.32 16 27 N -0.54 -14.05 11.25 -200.31 -2.25 -16.30 16 28 C 0.18 3.77 12.56 180.26 2.26 6.04 16 29 H 0.05 1.10 6.52 -2.39 -0.02 1.08 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.16 5.75 -2.39 -0.01 1.14 16 32 H 0.05 1.68 6.44 -2.39 -0.02 1.66 16 33 H 0.08 1.81 6.41 -2.39 -0.02 1.80 16 34 H 0.08 1.64 6.21 -2.39 -0.01 1.62 16 35 H 0.12 2.47 5.87 -2.39 -0.01 2.45 16 36 H 0.39 13.97 5.76 -92.70 -0.53 13.44 16 37 H 0.28 14.96 8.31 -92.71 -0.77 14.19 16 38 H 0.06 0.83 7.23 -2.39 -0.02 0.81 16 39 H 0.06 0.80 6.24 -2.39 -0.01 0.79 16 40 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.06 1.10 5.93 -2.38 -0.01 1.09 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.42 6.16 7.39 -92.71 -0.68 5.48 16 44 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.16 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.19 2.83 8.06 -2.91 -0.02 2.80 16 47 H 0.18 3.32 8.06 -2.91 -0.02 3.30 16 48 H 0.23 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -84.24 385.61 1.50 -82.74 By element: Atomic # 1 Polarization: 38.91 SS G_CDS: -0.27 Total: 38.64 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 10.09 Total: 21.31 kcal Atomic # 7 Polarization: -125.85 SS G_CDS: -10.13 Total: -135.98 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -0.10 Total: -45.83 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 1.90 Total: 39.13 kcal Total: -84.24 1.50 -82.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157287416.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.719 kcal (2) G-P(sol) polarization free energy of solvation -84.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds