Wall clock time and date at job start Tue Mar 31 2020 20:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34951 * 126.03602 * 2 1 4 4 C 1.35312 * 107.74772 * 180.15058 * 3 2 1 5 5 C 1.39869 * 107.91889 * 359.61173 * 4 3 2 6 6 C 1.50699 * 125.90295 * 180.22479 * 5 4 3 7 7 C 1.52991 * 109.47655 * 124.99832 * 6 5 4 8 8 C 1.50699 * 109.47655 * 179.97438 * 7 6 5 9 9 O 1.21281 * 119.99400 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00412 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00017 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47161 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.47336 * 180.02562 * 12 11 10 14 14 N 1.46897 * 109.47192 * 180.02562 * 13 12 11 15 15 C 1.46900 * 110.99939 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47202 * 179.97438 * 15 14 13 17 17 O 1.21291 * 120.00118 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99806 * 180.02562 * 16 15 14 19 19 C 1.37103 * 119.99655 * 179.97438 * 18 16 15 20 20 H 1.07996 * 119.99932 * 359.97438 * 19 18 16 21 21 C 1.38956 * 120.00114 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99633 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00110 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46940 * 90.00454 * 23 21 19 25 25 H 1.48497 * 109.46814 * 210.00299 * 23 21 19 26 26 H 1.48495 * 109.47096 * 330.00202 * 23 21 19 27 27 N 1.30837 * 108.20188 * 0.23962 * 5 4 3 28 28 H 1.08999 * 109.47098 * 270.25891 * 1 2 3 29 29 H 1.08998 * 109.47303 * 30.25669 * 1 2 3 30 30 H 1.08994 * 109.47129 * 150.25391 * 1 2 3 31 31 H 1.08008 * 126.12704 * 0.02562 * 3 2 1 32 32 H 1.08002 * 126.04491 * 179.88067 * 4 3 2 33 33 H 1.09002 * 109.46897 * 245.00208 * 6 5 4 34 34 H 1.09007 * 109.46619 * 4.99549 * 6 5 4 35 35 H 1.09002 * 109.47275 * 300.00144 * 7 6 5 36 36 H 1.09007 * 109.47338 * 60.00157 * 7 6 5 37 37 H 0.96999 * 119.99937 * 359.97438 * 10 8 7 38 38 H 1.09002 * 109.47043 * 300.00257 * 11 10 8 39 39 H 1.09007 * 109.47394 * 59.99850 * 11 10 8 40 40 H 1.09002 * 109.47510 * 300.00165 * 12 11 10 41 41 H 1.09007 * 109.47201 * 60.00238 * 12 11 10 42 42 H 1.09005 * 109.46711 * 300.00004 * 13 12 11 43 43 H 1.08997 * 109.46828 * 60.00013 * 13 12 11 44 44 H 1.00896 * 110.99933 * 56.04418 * 14 13 12 45 45 H 1.09004 * 109.47155 * 300.00197 * 15 14 13 46 46 H 1.08998 * 109.46967 * 59.99640 * 15 14 13 47 47 H 0.96992 * 120.00824 * 359.97438 * 18 16 15 48 48 H 0.96996 * 120.00304 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0034 5 6 3.5347 -0.7320 0.0035 6 6 4.7497 -1.6235 0.0075 7 6 4.6719 -2.5864 1.1938 8 6 5.8866 -3.4784 1.1974 9 8 6.7315 -3.3556 0.3361 10 7 6.0344 -4.4118 2.1582 11 6 7.2155 -5.2785 2.1620 12 6 7.1383 -6.2407 3.3490 13 6 8.3722 -7.1455 3.3534 14 7 8.2977 -8.0697 4.4927 15 6 9.4683 -8.9564 4.5287 16 6 9.3572 -9.8875 5.7084 17 8 8.3974 -9.8189 6.4469 18 7 10.3247 -10.7958 5.9435 19 6 10.2238 -11.6425 7.0170 20 1 9.3693 -11.5814 7.6745 21 6 11.2211 -12.5794 7.2592 22 7 12.2612 -12.6534 6.4594 23 14 11.0833 -13.7335 8.7215 24 1 10.3676 -14.9685 8.3116 25 1 12.4429 -14.0861 9.2035 26 1 10.3299 -13.0634 9.8116 27 7 2.2892 -1.1327 0.0055 28 1 -0.3633 0.0046 1.0276 29 1 -0.3634 0.8876 -0.5178 30 1 -0.3633 -0.8922 -0.5099 31 1 1.9281 2.1194 0.0004 32 1 4.4211 1.2964 -0.0061 33 1 4.7853 -2.1932 -0.9212 34 1 5.6483 -1.0125 0.0937 35 1 4.6362 -2.0168 2.1224 36 1 3.7733 -3.1974 1.1076 37 1 5.3591 -4.5093 2.8477 38 1 7.2510 -5.8484 1.2335 39 1 8.1143 -4.6676 2.2478 40 1 7.1031 -5.6705 4.2774 41 1 6.2396 -6.8517 3.2637 42 1 8.4077 -7.7157 2.4251 43 1 9.2705 -6.5342 3.4390 44 1 7.4413 -8.6027 4.4706 45 1 9.5114 -9.5389 3.6084 46 1 10.3745 -8.3581 4.6226 47 1 11.0924 -10.8505 5.3532 48 1 12.9576 -13.3071 6.6285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159093855.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:52 Heat of formation + Delta-G solvation = -7.874208 kcal Electronic energy + Delta-G solvation = -26412.775062 eV Core-core repulsion = 22310.961149 eV Total energy + Delta-G solvation = -4101.813913 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.59539 -39.91968 -38.30793 -36.59423 -35.05969 -34.74830 -33.83038 -32.44418 -31.40654 -31.06739 -30.37574 -27.84809 -26.86143 -25.15941 -24.18324 -22.94535 -21.69542 -21.59290 -20.53090 -19.85718 -19.20154 -17.87985 -17.59735 -16.98048 -16.50455 -16.26092 -16.00348 -15.73310 -15.66048 -14.93827 -14.58878 -14.51234 -14.35997 -14.15841 -14.01507 -13.73929 -13.48627 -13.40355 -13.18135 -13.03110 -12.72928 -12.54067 -12.31488 -12.04591 -11.81680 -11.76093 -11.60686 -11.45507 -11.40654 -11.07064 -10.92237 -10.91833 -10.38541 -10.21039 -10.10401 -9.62899 -9.50026 -9.29260 -8.98624 -8.46022 -8.05977 -7.94939 -6.40731 -3.81610 1.44945 2.06964 2.35212 2.42907 2.94995 3.18655 3.27281 3.33380 3.91993 4.01126 4.10190 4.28615 4.32759 4.39875 4.61629 4.62750 4.69457 4.80102 4.84834 4.88276 4.99904 5.07834 5.16510 5.20089 5.25419 5.27547 5.34871 5.45769 5.51372 5.53950 5.65561 5.71467 5.73182 5.81051 5.98719 6.01158 6.05945 6.20871 6.26209 6.28255 6.55910 7.20893 7.24401 7.30636 7.56157 7.65916 7.99066 8.07389 8.62348 9.18826 9.55451 10.06878 10.77064 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.037283 B = 0.001139 C = 0.001114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.832112 B =24571.374497 C =25131.647776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.379 5.379 3 C 0.052 3.948 4 C -0.268 4.268 5 C 0.076 3.924 6 C -0.021 4.021 7 C -0.134 4.134 8 C 0.513 3.487 9 O -0.542 6.542 10 N -0.730 5.730 11 C 0.120 3.880 12 C -0.129 4.129 13 C 0.062 3.938 14 N -0.670 5.670 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.584 6.584 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.269 1.269 27 N -0.294 5.294 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.173 0.827 32 H 0.148 0.852 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.402 0.598 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.029 0.971 43 H 0.074 0.926 44 H 0.349 0.651 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.475 27.255 -15.421 36.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.161 5.161 3 C -0.094 4.094 4 C -0.297 4.297 5 C -0.090 4.090 6 C -0.061 4.061 7 C -0.175 4.175 8 C 0.299 3.701 9 O -0.419 6.419 10 N -0.382 5.382 11 C -0.004 4.004 12 C -0.167 4.167 13 C -0.068 4.068 14 N -0.302 5.302 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 N -0.117 5.117 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.191 0.809 32 H 0.166 0.834 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.236 0.764 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.047 0.953 43 H 0.092 0.908 44 H 0.168 0.832 45 H 0.062 0.938 46 H 0.105 0.895 47 H 0.226 0.774 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.028 26.709 -15.083 36.633 hybrid contribution 0.410 -0.506 -0.022 0.651 sum -19.618 26.203 -15.105 36.051 Atomic orbital electron populations 1.21860 0.74206 1.04525 1.03426 1.48526 1.06641 1.03834 1.57086 1.22554 0.91233 0.93485 1.02102 1.21462 0.97121 0.94447 1.16687 1.22331 0.93236 0.94083 0.99379 1.19739 0.92349 0.95265 0.98754 1.21605 0.97095 0.97893 1.00862 1.20667 0.87820 0.80560 0.81026 1.90717 1.43978 1.69958 1.37277 1.46042 1.25115 1.36596 1.30480 1.21328 0.88037 0.92134 0.98915 1.21746 0.99080 0.97710 0.98205 1.21832 0.98031 0.94934 0.91991 1.60058 1.05169 1.22334 1.42633 1.21673 0.94735 0.94692 0.97130 1.19815 0.85311 0.84101 0.88180 1.90517 1.33375 1.72688 1.50261 1.41862 1.20597 1.30773 1.26780 1.19714 1.07236 1.11404 1.04623 0.87922 1.25261 0.95213 0.98455 0.98965 1.69612 1.10036 1.36573 1.38097 0.85857 0.77429 0.80000 0.81002 1.20434 1.20909 1.19393 1.77312 1.01305 1.07881 1.25230 0.90707 0.89498 0.89245 0.80936 0.83377 0.89345 0.89025 0.88723 0.88293 0.76370 0.91462 0.91218 0.90138 0.91278 0.95252 0.90765 0.83212 0.93810 0.89536 0.77436 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.30 11.47 59.85 0.69 0.99 16 2 N -0.38 -2.69 4.01 -68.16 -0.27 -2.96 16 3 C 0.05 0.31 11.49 -17.22 -0.20 0.11 16 4 C -0.27 -1.95 10.72 -40.01 -0.43 -2.37 16 5 C 0.08 0.66 6.49 -82.41 -0.53 0.13 16 6 C -0.02 -0.17 5.08 -27.89 -0.14 -0.32 16 7 C -0.13 -0.97 5.66 -27.89 -0.16 -1.13 16 8 C 0.51 5.01 7.83 -10.99 -0.09 4.93 16 9 O -0.54 -7.35 15.98 5.56 0.09 -7.26 16 10 N -0.73 -6.06 5.56 -60.29 -0.33 -6.40 16 11 C 0.12 1.12 5.67 -4.04 -0.02 1.10 16 12 C -0.13 -1.23 5.59 -26.73 -0.15 -1.38 16 13 C 0.06 0.74 5.69 -3.82 -0.02 0.71 16 14 N -0.67 -10.69 6.13 -115.06 -0.70 -11.39 16 15 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 16 C 0.44 10.49 7.82 -10.99 -0.09 10.41 16 17 O -0.58 -15.97 15.78 5.55 0.09 -15.89 16 18 N -0.56 -14.40 5.29 -10.96 -0.06 -14.46 16 19 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 20 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 22 N -0.90 -24.66 13.05 55.50 0.72 -23.94 16 23 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 N -0.29 -2.84 12.54 33.67 0.42 -2.42 16 28 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.17 0.37 8.06 -52.48 -0.42 -0.05 16 32 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 34 H 0.09 0.71 8.08 -51.93 -0.42 0.29 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.40 2.38 8.47 -40.82 -0.35 2.03 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.35 5.69 8.43 -39.29 -0.33 5.36 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 47 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 48 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 412.48 15.07 6.22 6.22 Total: -1.00 -36.60 412.48 -7.96 -44.56 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -7.69 Total: 11.87 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -1.41 Total: 5.97 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: -0.22 Total: -61.56 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: 0.18 Total: -23.15 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -36.60 -7.96 -44.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159093855.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.687 kcal (2) G-P(sol) polarization free energy of solvation -36.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds