Wall clock time and date at job start Tue Mar 31 2020 20:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34951 * 126.03602 * 2 1 4 4 C 1.35312 * 107.74772 * 180.15058 * 3 2 1 5 5 C 1.39869 * 107.91889 * 359.61173 * 4 3 2 6 6 C 1.50699 * 125.90295 * 180.22479 * 5 4 3 7 7 C 1.52991 * 109.47655 * 124.99832 * 6 5 4 8 8 C 1.50699 * 109.47655 * 179.97438 * 7 6 5 9 9 O 1.21281 * 119.99400 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00412 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00017 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47161 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.47336 * 180.02562 * 12 11 10 14 14 N 1.46897 * 109.47192 * 180.02562 * 13 12 11 15 15 C 1.46900 * 110.99939 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47202 * 179.97438 * 15 14 13 17 17 O 1.21291 * 120.00118 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99806 * 180.02562 * 16 15 14 19 19 C 1.37103 * 119.99655 * 179.97438 * 18 16 15 20 20 H 1.07996 * 119.99932 * 359.97438 * 19 18 16 21 21 C 1.38956 * 120.00114 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99633 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00110 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46940 * 90.00454 * 23 21 19 25 25 H 1.48497 * 109.46814 * 210.00299 * 23 21 19 26 26 H 1.48495 * 109.47096 * 330.00202 * 23 21 19 27 27 N 1.30837 * 108.20188 * 0.23962 * 5 4 3 28 28 H 1.08999 * 109.47098 * 270.25891 * 1 2 3 29 29 H 1.08998 * 109.47303 * 30.25669 * 1 2 3 30 30 H 1.08994 * 109.47129 * 150.25391 * 1 2 3 31 31 H 1.08008 * 126.12704 * 0.02562 * 3 2 1 32 32 H 1.08002 * 126.04491 * 179.88067 * 4 3 2 33 33 H 1.09002 * 109.46897 * 245.00208 * 6 5 4 34 34 H 1.09007 * 109.46619 * 4.99549 * 6 5 4 35 35 H 1.09002 * 109.47275 * 300.00144 * 7 6 5 36 36 H 1.09007 * 109.47338 * 60.00157 * 7 6 5 37 37 H 0.96999 * 119.99937 * 359.97438 * 10 8 7 38 38 H 1.09002 * 109.47043 * 300.00257 * 11 10 8 39 39 H 1.09007 * 109.47394 * 59.99850 * 11 10 8 40 40 H 1.09002 * 109.47510 * 300.00165 * 12 11 10 41 41 H 1.09007 * 109.47201 * 60.00238 * 12 11 10 42 42 H 1.09005 * 109.46711 * 300.00004 * 13 12 11 43 43 H 1.08997 * 109.46828 * 60.00013 * 13 12 11 44 44 H 1.00896 * 110.99933 * 56.04418 * 14 13 12 45 45 H 1.09004 * 109.47155 * 300.00197 * 15 14 13 46 46 H 1.08998 * 109.46967 * 59.99640 * 15 14 13 47 47 H 0.96992 * 120.00824 * 359.97438 * 18 16 15 48 48 H 0.96996 * 120.00304 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0034 5 6 3.5347 -0.7320 0.0035 6 6 4.7497 -1.6235 0.0075 7 6 4.6719 -2.5864 1.1938 8 6 5.8866 -3.4784 1.1974 9 8 6.7315 -3.3556 0.3361 10 7 6.0344 -4.4118 2.1582 11 6 7.2155 -5.2785 2.1620 12 6 7.1383 -6.2407 3.3490 13 6 8.3722 -7.1455 3.3534 14 7 8.2977 -8.0697 4.4927 15 6 9.4683 -8.9564 4.5287 16 6 9.3572 -9.8875 5.7084 17 8 8.3974 -9.8189 6.4469 18 7 10.3247 -10.7958 5.9435 19 6 10.2238 -11.6425 7.0170 20 1 9.3693 -11.5814 7.6745 21 6 11.2211 -12.5794 7.2592 22 7 12.2612 -12.6534 6.4594 23 14 11.0833 -13.7335 8.7215 24 1 10.3676 -14.9685 8.3116 25 1 12.4429 -14.0861 9.2035 26 1 10.3299 -13.0634 9.8116 27 7 2.2892 -1.1327 0.0055 28 1 -0.3633 0.0046 1.0276 29 1 -0.3634 0.8876 -0.5178 30 1 -0.3633 -0.8922 -0.5099 31 1 1.9281 2.1194 0.0004 32 1 4.4211 1.2964 -0.0061 33 1 4.7853 -2.1932 -0.9212 34 1 5.6483 -1.0125 0.0937 35 1 4.6362 -2.0168 2.1224 36 1 3.7733 -3.1974 1.1076 37 1 5.3591 -4.5093 2.8477 38 1 7.2510 -5.8484 1.2335 39 1 8.1143 -4.6676 2.2478 40 1 7.1031 -5.6705 4.2774 41 1 6.2396 -6.8517 3.2637 42 1 8.4077 -7.7157 2.4251 43 1 9.2705 -6.5342 3.4390 44 1 7.4413 -8.6027 4.4706 45 1 9.5114 -9.5389 3.6084 46 1 10.3745 -8.3581 4.6226 47 1 11.0924 -10.8505 5.3532 48 1 12.9576 -13.3071 6.6285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159093855.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:50 Heat of formation + Delta-G solvation = -36.624962 kcal Electronic energy + Delta-G solvation = -26414.021788 eV Core-core repulsion = 22310.961149 eV Total energy + Delta-G solvation = -4103.060639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.09237 -40.72234 -40.15030 -37.66968 -36.13568 -35.66930 -35.44797 -33.30317 -33.01624 -32.14880 -30.89917 -28.83438 -27.82590 -26.47664 -25.26081 -24.00115 -22.56406 -22.05195 -21.32522 -21.01667 -20.41696 -19.89872 -18.20823 -17.84260 -17.55247 -17.28126 -16.93450 -16.80885 -16.49754 -16.28275 -15.95273 -15.83437 -15.23779 -15.17657 -14.94928 -14.70000 -14.51053 -14.43416 -14.12775 -13.60932 -13.54694 -13.40045 -13.32446 -13.14039 -13.03129 -12.88165 -12.84100 -12.62297 -12.41123 -12.40972 -12.20281 -12.11347 -11.83424 -11.50323 -11.47939 -10.93626 -10.35242 -10.17818 -10.07273 -10.01575 -9.46850 -9.33087 -8.46522 -5.95525 0.96684 1.38563 1.42428 1.55365 1.64859 1.70249 1.80930 2.05152 2.21516 2.30963 2.95937 3.20874 3.53036 3.56498 3.79749 3.91963 4.02128 4.13146 4.16896 4.19450 4.21237 4.32637 4.37818 4.45977 4.49412 4.58212 4.59548 4.65604 4.70066 4.71927 4.72446 4.81066 4.87265 5.00293 5.09858 5.17911 5.19746 5.23155 5.41130 5.47100 5.72190 5.88828 6.10140 6.19424 6.41351 6.56102 6.60109 6.77884 7.12539 7.25981 7.56210 8.11297 8.70946 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.037283 B = 0.001139 C = 0.001114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.832112 B =24571.374497 C =25131.647776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.384 5.384 3 C 0.061 3.939 4 C -0.291 4.291 5 C 0.063 3.937 6 C -0.018 4.018 7 C -0.121 4.121 8 C 0.512 3.488 9 O -0.584 6.584 10 N -0.721 5.721 11 C 0.126 3.874 12 C -0.115 4.115 13 C 0.062 3.938 14 N -0.683 5.683 15 C 0.064 3.936 16 C 0.437 3.563 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.336 4.336 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.273 1.273 27 N -0.333 5.333 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.084 0.916 31 H 0.212 0.788 32 H 0.160 0.840 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.415 0.585 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.041 0.959 43 H 0.079 0.921 44 H 0.345 0.655 45 H 0.067 0.933 46 H 0.104 0.896 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.316 28.381 -15.467 38.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.167 5.167 3 C -0.086 4.086 4 C -0.320 4.320 5 C -0.102 4.102 6 C -0.057 4.057 7 C -0.162 4.162 8 C 0.300 3.700 9 O -0.464 6.464 10 N -0.373 5.373 11 C 0.002 3.998 12 C -0.154 4.154 13 C -0.067 4.067 14 N -0.316 5.316 15 C -0.068 4.068 16 C 0.224 3.776 17 O -0.510 6.510 18 N -0.210 5.210 19 C -0.466 4.466 20 H 0.097 0.903 21 C -0.211 4.211 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.197 1.197 27 N -0.157 5.157 28 H 0.103 0.897 29 H 0.134 0.866 30 H 0.103 0.897 31 H 0.229 0.771 32 H 0.177 0.823 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.130 0.870 36 H 0.123 0.877 37 H 0.252 0.748 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.164 0.836 45 H 0.085 0.915 46 H 0.122 0.878 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.880 27.834 -15.134 37.944 hybrid contribution 0.600 -0.783 -0.043 0.987 sum -20.280 27.051 -15.177 37.059 Atomic orbital electron populations 1.22170 0.72214 1.05806 1.04525 1.48884 1.07895 1.03524 1.56347 1.23168 0.90645 0.94782 0.99974 1.21761 0.98486 0.94045 1.17747 1.22429 0.93092 0.94924 0.99804 1.19653 0.92482 0.95260 0.98351 1.21526 0.95884 0.97446 1.01307 1.21064 0.87904 0.80595 0.80429 1.90699 1.45569 1.71194 1.38936 1.45966 1.25071 1.35843 1.30431 1.21186 0.88204 0.91991 0.98460 1.21590 0.98391 0.97289 0.98086 1.21914 0.99324 0.94496 0.90944 1.60061 1.04270 1.22212 1.45031 1.21538 0.96272 0.94174 0.94865 1.20894 0.83888 0.83763 0.89039 1.90483 1.34733 1.73688 1.52110 1.41934 1.21310 1.31194 1.26555 1.19692 1.07482 1.13451 1.05944 0.90278 1.26041 0.94478 0.99269 1.01357 1.69672 1.10330 1.37029 1.39120 0.84926 0.77894 0.77938 0.77580 1.19579 1.19531 1.19737 1.77220 1.01962 1.09764 1.26776 0.89682 0.86550 0.89678 0.77138 0.82250 0.90916 0.89093 0.87049 0.87727 0.74794 0.92080 0.91871 0.90262 0.90537 0.94111 0.90262 0.83636 0.91535 0.87819 0.76961 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.39 11.47 127.77 1.47 1.86 16 2 N -0.38 -4.94 4.01 -369.57 -1.48 -6.42 16 3 C 0.06 0.60 11.49 83.54 0.96 1.56 16 4 C -0.29 -3.99 10.72 21.99 0.24 -3.75 16 5 C 0.06 1.10 6.49 43.10 0.28 1.38 16 6 C -0.02 -0.30 5.08 29.84 0.15 -0.14 16 7 C -0.12 -1.71 5.66 29.84 0.17 -1.54 16 8 C 0.51 9.84 7.83 87.66 0.69 10.53 16 9 O -0.58 -16.07 15.98 -3.03 -0.05 -16.12 16 10 N -0.72 -11.19 5.56 -463.06 -2.57 -13.76 16 11 C 0.13 2.22 5.67 86.38 0.49 2.71 16 12 C -0.12 -2.01 5.59 30.60 0.17 -1.84 16 13 C 0.06 1.36 5.69 86.31 0.49 1.85 16 14 N -0.68 -20.92 6.13 -517.93 -3.17 -24.09 16 15 C 0.06 2.18 6.17 85.56 0.53 2.71 16 16 C 0.44 20.89 7.82 87.66 0.69 21.58 16 17 O -0.62 -34.69 15.78 -3.06 -0.05 -34.74 16 18 N -0.57 -29.60 5.29 -306.99 -1.62 -31.22 16 19 C -0.34 -19.23 9.68 84.04 0.81 -18.42 16 20 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 21 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 22 N -0.92 -49.90 13.05 21.67 0.28 -49.62 16 23 Si 0.99 43.00 29.55 68.60 2.03 45.03 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 N -0.33 -6.36 12.54 -47.39 -0.59 -6.95 16 28 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.12 -0.22 8.14 -2.39 -0.02 -0.24 16 30 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.21 0.19 8.06 -2.91 -0.02 0.17 16 32 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 34 H 0.09 1.47 8.08 -2.38 -0.02 1.45 16 35 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.42 4.25 8.47 -92.71 -0.79 3.47 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.35 10.96 8.43 -89.70 -0.76 10.20 16 45 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 46 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 47 H 0.40 19.44 7.90 -92.71 -0.73 18.71 16 48 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -80.20 412.48 -0.92 -81.12 By element: Atomic # 1 Polarization: 39.74 SS G_CDS: -1.28 Total: 38.46 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 7.59 Total: 18.32 kcal Atomic # 7 Polarization: -122.91 SS G_CDS: -9.16 Total: -132.07 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -0.10 Total: -50.85 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -80.20 -0.92 -81.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159093855.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.494 kcal (2) G-P(sol) polarization free energy of solvation -80.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds