Wall clock time and date at job start Tue Mar 31 2020 21:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00445 * 2 1 4 4 C 1.52996 * 109.47272 * 179.97438 * 3 2 1 5 5 C 1.52991 * 109.46071 * 299.96998 * 4 3 2 6 6 N 1.46500 * 109.47310 * 60.02787 * 5 4 3 7 7 C 1.34777 * 120.00492 * 180.02562 * 6 5 4 8 8 O 1.21559 * 119.99741 * 359.97438 * 7 6 5 9 9 C 1.47863 * 120.00362 * 179.97438 * 7 6 5 10 10 N 1.34548 * 126.04952 * 0.02562 * 9 7 6 11 11 C 1.30870 * 107.27363 * 179.97438 * 10 9 7 12 12 N 1.34587 * 107.62324 * 0.02562 * 11 10 9 13 13 C 1.46497 * 125.75043 * 180.02562 * 12 11 10 14 14 N 1.28855 * 108.50174 * 359.72862 * 12 11 10 15 15 C 1.53042 * 109.45987 * 179.97438 * 4 3 2 16 16 C 1.53196 * 109.31301 * 178.62714 * 15 4 3 17 17 N 1.46919 * 108.77357 * 54.63738 * 16 15 4 18 18 C 1.36935 * 120.62952 * 126.36714 * 17 16 15 19 19 H 1.07992 * 120.00276 * 332.45452 * 18 17 16 20 20 C 1.38815 * 120.00026 * 152.17450 * 18 17 16 21 21 N 1.31620 * 119.99785 * 343.17001 * 20 18 17 22 22 Si 1.86799 * 120.00242 * 163.17219 * 20 18 17 23 23 H 1.48499 * 109.47051 * 59.99668 * 22 20 18 24 24 H 1.48497 * 109.47273 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46803 * 299.99780 * 22 20 18 26 26 C 1.46930 * 118.74055 * 306.64082 * 17 16 15 27 27 C 1.52762 * 109.00426 * 53.31040 * 26 17 16 28 28 H 1.08996 * 109.47609 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47368 * 300.00942 * 1 2 3 30 30 H 1.09007 * 109.46981 * 60.00195 * 1 2 3 31 31 H 1.08996 * 109.47051 * 59.99220 * 3 2 1 32 32 H 1.09008 * 109.46718 * 299.99574 * 3 2 1 33 33 H 1.09006 * 109.47543 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47293 * 300.02529 * 5 4 3 35 35 H 0.96998 * 119.99663 * 359.97438 * 6 5 4 36 36 H 1.07997 * 126.18985 * 180.02562 * 11 10 9 37 37 H 1.09001 * 109.47381 * 89.99337 * 13 12 11 38 38 H 1.08998 * 109.47641 * 209.99912 * 13 12 11 39 39 H 1.09005 * 109.47045 * 330.00213 * 13 12 11 40 40 H 1.09005 * 109.49382 * 58.67827 * 15 4 3 41 41 H 1.08991 * 109.52573 * 298.59920 * 15 4 3 42 42 H 1.09000 * 109.58299 * 294.85003 * 16 15 4 43 43 H 1.08994 * 109.70288 * 174.49711 * 16 15 4 44 44 H 0.97003 * 120.00199 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.58738 * 173.14187 * 26 17 16 46 46 H 1.08996 * 109.58558 * 293.57263 * 26 17 16 47 47 H 1.09005 * 109.56252 * 185.54994 * 27 26 17 48 48 H 1.08999 * 109.38709 * 65.51901 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9861 0.4261 1.2506 6 7 3.3906 -0.9124 1.2509 7 6 3.6487 -1.7646 2.2627 8 8 4.3760 -1.4228 3.1748 9 6 3.0472 -3.1154 2.2633 10 7 2.2294 -3.6184 1.3207 11 6 1.9177 -4.8358 1.6860 12 7 2.5416 -5.0835 2.8525 13 6 2.4667 -6.3321 3.6150 14 7 3.2211 -4.0395 3.1826 15 6 4.1577 2.5827 0.0000 16 6 5.6842 2.4579 0.0353 17 7 6.1149 1.6053 -1.0810 18 6 7.0604 2.0436 -1.9692 19 1 7.1785 3.1010 -2.1543 20 6 7.8713 1.1291 -2.6274 21 7 7.9743 -0.1031 -2.1762 22 14 8.8162 1.6472 -4.1532 23 1 9.7363 2.7614 -3.8110 24 1 9.6015 0.4950 -4.6641 25 1 7.8612 2.0968 -5.1978 26 6 5.5073 0.2759 -1.2298 27 6 3.9868 0.4229 -1.2477 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6886 1.8463 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 5.0728 0.3402 1.2515 34 1 3.6637 0.9675 2.1400 35 1 2.8100 -1.1850 0.5233 36 1 1.2759 -5.5182 1.1487 37 1 3.2621 -7.0036 3.2918 38 1 2.5822 -6.1167 4.6773 39 1 1.4998 -6.8052 3.4433 40 1 3.8173 3.1328 0.8773 41 1 3.8570 3.1149 -0.9023 42 1 5.9922 2.0077 0.9790 43 1 6.1360 3.4449 -0.0633 44 1 8.5406 -0.7423 -2.6363 45 1 5.8403 -0.1756 -2.1644 46 1 5.8007 -0.3559 -0.3915 47 1 3.5248 -0.5643 -1.2585 48 1 3.6871 0.9746 -2.1387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162246825.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:03 Heat of formation + Delta-G solvation = 45.557472 kcal Electronic energy + Delta-G solvation = -30910.497970 eV Core-core repulsion = 26811.001029 eV Total energy + Delta-G solvation = -4099.496941 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.44475 -39.83526 -38.32774 -36.98520 -34.68958 -34.40303 -32.90650 -31.77439 -30.84317 -29.88586 -28.28853 -27.55967 -26.23047 -25.60275 -23.77153 -23.49914 -22.27381 -22.05789 -20.79490 -20.15421 -18.63817 -17.73956 -16.84301 -16.76215 -16.23998 -15.89731 -15.80597 -15.62797 -15.29029 -14.75519 -14.65258 -14.42295 -13.81428 -13.68782 -13.57029 -13.48632 -13.31890 -13.07418 -12.78591 -12.64950 -12.18066 -11.98219 -11.81448 -11.53953 -11.31209 -11.18097 -10.85778 -10.66122 -10.49040 -10.47664 -10.45070 -10.21420 -10.09061 -9.94107 -9.72515 -9.59475 -9.58727 -9.43100 -9.30380 -8.50034 -8.34672 -6.57075 -5.69848 -3.12393 1.44137 2.10307 2.14899 3.32877 3.43572 3.49307 3.50224 3.65751 3.84969 4.13459 4.27928 4.56345 4.66625 4.74459 4.93711 5.04064 5.05519 5.16897 5.35882 5.38729 5.44177 5.50839 5.59444 5.65139 5.70683 5.75220 5.80761 5.96469 6.09184 6.13735 6.26102 6.30237 6.39300 6.44998 6.48766 6.69039 6.74326 6.79976 6.88783 6.95332 7.04948 7.26049 7.48356 7.78686 7.83869 7.87486 8.18632 8.53407 8.63398 9.29754 9.93467 10.50278 11.38243 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012296 B = 0.003471 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.631060 B = 8063.971535 C = 9192.564388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.386 6.386 3 C 0.070 3.930 4 C -0.059 4.059 5 C 0.132 3.868 6 N -0.684 5.684 7 C 0.605 3.395 8 O -0.531 6.531 9 C 0.154 3.846 10 N -0.477 5.477 11 C 0.184 3.816 12 N -0.310 5.310 13 C 0.087 3.913 14 N -0.258 5.258 15 C -0.118 4.118 16 C 0.143 3.857 17 N -0.591 5.591 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.900 5.900 22 Si 0.901 3.099 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.170 3.830 27 C -0.126 4.126 28 H 0.083 0.917 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.419 0.581 36 H 0.224 0.776 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.023 0.977 43 H 0.056 0.944 44 H 0.253 0.747 45 H 0.086 0.914 46 H 0.021 0.979 47 H 0.057 0.943 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.080 -9.362 7.767 22.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.305 6.305 3 C -0.006 4.006 4 C -0.059 4.059 5 C 0.009 3.991 6 N -0.341 5.341 7 C 0.386 3.614 8 O -0.406 6.406 9 C -0.126 4.126 10 N -0.202 5.202 11 C -0.111 4.111 12 N -0.106 5.106 13 C -0.054 4.054 14 N -0.097 5.097 15 C -0.158 4.158 16 C 0.016 3.984 17 N -0.314 5.314 18 C -0.383 4.383 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.544 5.544 22 Si 0.731 3.269 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.211 1.211 26 C 0.045 3.955 27 C -0.166 4.166 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.263 0.737 36 H 0.241 0.759 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.040 0.960 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.039 0.961 47 H 0.075 0.925 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.027 -9.129 8.600 21.960 hybrid contribution -0.257 -0.200 -1.196 1.239 sum -18.284 -9.328 7.405 21.821 Atomic orbital electron populations 1.22665 0.81462 1.02444 0.99414 1.87616 1.19245 1.28337 1.95252 1.22768 0.93871 0.84227 0.99779 1.20801 0.91584 0.97210 0.96333 1.21544 0.99619 0.81216 0.96743 1.45962 1.49472 1.14109 1.24553 1.16315 0.80732 0.81195 0.83162 1.90809 1.37169 1.76186 1.36423 1.23903 1.00767 0.97387 0.90544 1.71325 1.14833 1.07334 1.26742 1.26491 1.00819 0.95636 0.88185 1.47383 1.32585 1.12470 1.18124 1.22199 1.04516 0.80816 0.97844 1.74359 1.15440 0.94975 1.24883 1.21984 0.99300 0.93474 1.01075 1.20935 0.90596 0.95428 0.91438 1.44028 1.44609 1.14910 1.27823 1.19126 1.10351 0.92219 1.16559 0.91771 1.25039 0.97577 0.96645 1.00357 1.70040 1.40750 1.04413 1.39227 0.86392 0.79566 0.77337 0.83574 1.20976 1.21733 1.21135 1.20718 0.86430 0.86695 1.01700 1.22117 1.00823 0.98619 0.94996 0.89840 0.94653 0.94337 0.93652 0.93111 0.89477 0.92262 0.73740 0.75950 0.89233 0.88323 0.88155 0.92661 0.91503 0.95959 0.92569 0.93660 0.89600 0.96078 0.92464 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 11.01 101.05 1.11 1.50 16 2 O -0.39 -5.35 6.73 -35.23 -0.24 -5.59 16 3 C 0.07 0.97 4.80 37.16 0.18 1.15 16 4 C -0.06 -0.98 0.51 -154.47 -0.08 -1.06 16 5 C 0.13 2.39 3.80 -4.05 -0.02 2.38 16 6 N -0.68 -12.29 4.62 -61.24 -0.28 -12.58 16 7 C 0.61 11.82 7.83 -12.32 -0.10 11.73 16 8 O -0.53 -11.96 17.09 5.31 0.09 -11.87 16 9 C 0.15 2.65 7.96 -156.36 -1.24 1.41 16 10 N -0.48 -6.89 11.09 -12.37 -0.14 -7.02 16 11 C 0.18 1.80 12.62 -90.48 -1.14 0.66 16 12 N -0.31 -3.21 3.72 -69.39 -0.26 -3.47 16 13 C 0.09 0.38 11.38 59.85 0.68 1.06 16 14 N -0.26 -4.04 12.08 32.07 0.39 -3.66 16 15 C -0.12 -1.98 4.91 -26.61 -0.13 -2.11 16 16 C 0.14 2.97 6.05 -3.71 -0.02 2.95 16 17 N -0.59 -14.83 3.00 -172.59 -0.52 -15.35 16 18 C -0.25 -6.99 9.58 -15.06 -0.14 -7.13 16 19 H 0.06 1.73 7.88 -52.49 -0.41 1.32 16 20 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 21 N -0.90 -26.74 11.18 55.49 0.62 -26.12 16 22 Si 0.90 22.02 29.59 -169.99 -5.03 16.99 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 C 0.17 4.13 4.81 -3.93 -0.02 4.11 16 27 C -0.13 -2.44 4.57 -26.83 -0.12 -2.56 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.09 1.87 4.99 -51.93 -0.26 1.61 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.42 7.23 4.41 -40.82 -0.18 7.05 16 36 H 0.22 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.10 0.07 8.14 -51.93 -0.42 -0.35 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.02 0.48 6.69 -51.93 -0.35 0.14 16 43 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 44 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.09 2.36 6.05 -51.93 -0.31 2.04 16 46 H 0.02 0.56 6.70 -51.93 -0.35 0.21 16 47 H 0.06 1.08 6.49 -51.93 -0.34 0.74 16 48 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 380.41 15.07 5.73 5.73 Total: -1.00 -36.81 380.41 -8.00 -44.81 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.24 Total: 4.06 kcal Atomic # 6 Polarization: 15.18 SS G_CDS: -1.13 Total: 14.05 kcal Atomic # 7 Polarization: -68.00 SS G_CDS: -0.19 Total: -68.19 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.15 Total: -17.46 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.81 -8.00 -44.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162246825.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.370 kcal (2) G-P(sol) polarization free energy of solvation -36.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds