Wall clock time and date at job start Tue Mar 31 2020 21:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00445 * 2 1 4 4 C 1.52996 * 109.47272 * 179.97438 * 3 2 1 5 5 C 1.52991 * 109.46071 * 299.96998 * 4 3 2 6 6 N 1.46500 * 109.47310 * 60.02787 * 5 4 3 7 7 C 1.34777 * 120.00492 * 180.02562 * 6 5 4 8 8 O 1.21559 * 119.99741 * 359.97438 * 7 6 5 9 9 C 1.47863 * 120.00362 * 179.97438 * 7 6 5 10 10 N 1.34548 * 126.04952 * 0.02562 * 9 7 6 11 11 C 1.30870 * 107.27363 * 179.97438 * 10 9 7 12 12 N 1.34587 * 107.62324 * 0.02562 * 11 10 9 13 13 C 1.46497 * 125.75043 * 180.02562 * 12 11 10 14 14 N 1.28855 * 108.50174 * 359.72862 * 12 11 10 15 15 C 1.53042 * 109.45987 * 179.97438 * 4 3 2 16 16 C 1.53196 * 109.31301 * 178.62714 * 15 4 3 17 17 N 1.46919 * 108.77357 * 54.63738 * 16 15 4 18 18 C 1.36935 * 120.62952 * 126.36714 * 17 16 15 19 19 H 1.07992 * 120.00276 * 332.45452 * 18 17 16 20 20 C 1.38815 * 120.00026 * 152.17450 * 18 17 16 21 21 N 1.31620 * 119.99785 * 343.17001 * 20 18 17 22 22 Si 1.86799 * 120.00242 * 163.17219 * 20 18 17 23 23 H 1.48499 * 109.47051 * 59.99668 * 22 20 18 24 24 H 1.48497 * 109.47273 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46803 * 299.99780 * 22 20 18 26 26 C 1.46930 * 118.74055 * 306.64082 * 17 16 15 27 27 C 1.52762 * 109.00426 * 53.31040 * 26 17 16 28 28 H 1.08996 * 109.47609 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47368 * 300.00942 * 1 2 3 30 30 H 1.09007 * 109.46981 * 60.00195 * 1 2 3 31 31 H 1.08996 * 109.47051 * 59.99220 * 3 2 1 32 32 H 1.09008 * 109.46718 * 299.99574 * 3 2 1 33 33 H 1.09006 * 109.47543 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47293 * 300.02529 * 5 4 3 35 35 H 0.96998 * 119.99663 * 359.97438 * 6 5 4 36 36 H 1.07997 * 126.18985 * 180.02562 * 11 10 9 37 37 H 1.09001 * 109.47381 * 89.99337 * 13 12 11 38 38 H 1.08998 * 109.47641 * 209.99912 * 13 12 11 39 39 H 1.09005 * 109.47045 * 330.00213 * 13 12 11 40 40 H 1.09005 * 109.49382 * 58.67827 * 15 4 3 41 41 H 1.08991 * 109.52573 * 298.59920 * 15 4 3 42 42 H 1.09000 * 109.58299 * 294.85003 * 16 15 4 43 43 H 1.08994 * 109.70288 * 174.49711 * 16 15 4 44 44 H 0.97003 * 120.00199 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.58738 * 173.14187 * 26 17 16 46 46 H 1.08996 * 109.58558 * 293.57263 * 26 17 16 47 47 H 1.09005 * 109.56252 * 185.54994 * 27 26 17 48 48 H 1.08999 * 109.38709 * 65.51901 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9861 0.4261 1.2506 6 7 3.3906 -0.9124 1.2509 7 6 3.6487 -1.7646 2.2627 8 8 4.3760 -1.4228 3.1748 9 6 3.0472 -3.1154 2.2633 10 7 2.2294 -3.6184 1.3207 11 6 1.9177 -4.8358 1.6860 12 7 2.5416 -5.0835 2.8525 13 6 2.4667 -6.3321 3.6150 14 7 3.2211 -4.0395 3.1826 15 6 4.1577 2.5827 0.0000 16 6 5.6842 2.4579 0.0353 17 7 6.1149 1.6053 -1.0810 18 6 7.0604 2.0436 -1.9692 19 1 7.1785 3.1010 -2.1543 20 6 7.8713 1.1291 -2.6274 21 7 7.9743 -0.1031 -2.1762 22 14 8.8162 1.6472 -4.1532 23 1 9.7363 2.7614 -3.8110 24 1 9.6015 0.4950 -4.6641 25 1 7.8612 2.0968 -5.1978 26 6 5.5073 0.2759 -1.2298 27 6 3.9868 0.4229 -1.2477 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6886 1.8463 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 5.0728 0.3402 1.2515 34 1 3.6637 0.9675 2.1400 35 1 2.8100 -1.1850 0.5233 36 1 1.2759 -5.5182 1.1487 37 1 3.2621 -7.0036 3.2918 38 1 2.5822 -6.1167 4.6773 39 1 1.4998 -6.8052 3.4433 40 1 3.8173 3.1328 0.8773 41 1 3.8570 3.1149 -0.9023 42 1 5.9922 2.0077 0.9790 43 1 6.1360 3.4449 -0.0633 44 1 8.5406 -0.7423 -2.6363 45 1 5.8403 -0.1756 -2.1644 46 1 5.8007 -0.3559 -0.3915 47 1 3.5248 -0.5643 -1.2585 48 1 3.6871 0.9746 -2.1387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162246825.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:02 Heat of formation + Delta-G solvation = 19.307553 kcal Electronic energy + Delta-G solvation = -30911.636252 eV Core-core repulsion = 26811.001029 eV Total energy + Delta-G solvation = -4100.635223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.39875 -41.27812 -39.79631 -38.24907 -36.11466 -35.53376 -34.54012 -32.75329 -32.68597 -31.61900 -29.23465 -28.89288 -27.42206 -26.80333 -25.45600 -24.65454 -23.84975 -23.01857 -22.47623 -21.48036 -20.07602 -19.16965 -18.26938 -17.75573 -17.44022 -17.11019 -17.02580 -16.90127 -16.72378 -16.28010 -15.84615 -15.75795 -15.30226 -15.23193 -15.09043 -14.79355 -14.38453 -14.09978 -13.95799 -13.90950 -13.67136 -13.31086 -13.03606 -12.94321 -12.82319 -12.62773 -12.52183 -12.29271 -12.25397 -11.99961 -11.80510 -11.54697 -11.50945 -11.41627 -11.31034 -11.13065 -11.09164 -10.57889 -10.51989 -10.44301 -9.95306 -8.63355 -7.83415 -5.29290 0.33335 1.17545 1.35805 1.47291 1.49996 1.56855 2.14194 2.30852 2.53607 2.82438 3.22929 3.31143 3.56893 3.67679 3.75247 3.90351 4.00777 4.01372 4.28806 4.37042 4.42429 4.49286 4.52799 4.57298 4.63576 4.67403 4.69542 4.71011 4.74603 4.83350 4.88246 4.94086 4.96979 5.06862 5.18500 5.25426 5.28294 5.35823 5.39340 5.46793 5.56239 5.67205 5.70637 5.80635 6.31658 6.41576 6.55845 7.05414 7.17684 7.21909 7.90063 8.42204 9.22566 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012296 B = 0.003471 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.631060 B = 8063.971535 C = 9192.564388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.409 6.409 3 C 0.078 3.922 4 C -0.051 4.051 5 C 0.138 3.862 6 N -0.674 5.674 7 C 0.597 3.403 8 O -0.577 6.577 9 C 0.121 3.879 10 N -0.505 5.505 11 C 0.204 3.796 12 N -0.301 5.301 13 C 0.074 3.926 14 N -0.287 5.287 15 C -0.106 4.106 16 C 0.136 3.864 17 N -0.608 5.608 18 C -0.261 4.261 19 H 0.071 0.929 20 C -0.055 4.055 21 N -0.938 5.938 22 Si 0.969 3.031 23 H -0.275 1.275 24 H -0.298 1.298 25 H -0.275 1.275 26 C 0.184 3.816 27 C -0.109 4.109 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.424 0.576 36 H 0.283 0.717 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.147 0.853 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.008 0.992 43 H 0.060 0.940 44 H 0.247 0.753 45 H 0.047 0.953 46 H -0.015 1.015 47 H 0.060 0.940 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.389 -9.636 7.242 25.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.328 6.328 3 C 0.002 3.998 4 C -0.052 4.052 5 C 0.014 3.986 6 N -0.331 5.331 7 C 0.380 3.620 8 O -0.455 6.455 9 C -0.158 4.158 10 N -0.231 5.231 11 C -0.090 4.090 12 N -0.097 5.097 13 C -0.064 4.064 14 N -0.129 5.129 15 C -0.146 4.146 16 C 0.011 3.989 17 N -0.331 5.331 18 C -0.391 4.391 19 H 0.089 0.911 20 C -0.250 4.250 21 N -0.584 5.584 22 Si 0.797 3.203 23 H -0.201 1.201 24 H -0.224 1.224 25 H -0.201 1.201 26 C 0.058 3.942 27 C -0.148 4.148 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.268 0.732 36 H 0.298 0.702 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.165 0.835 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.026 0.974 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.003 0.997 47 H 0.078 0.922 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.388 -9.396 8.074 24.717 hybrid contribution 0.739 -0.278 -0.939 1.227 sum -20.648 -9.674 7.135 23.892 Atomic orbital electron populations 1.22835 0.79393 1.03436 1.00565 1.87562 1.21409 1.28347 1.95487 1.22609 0.90880 0.84735 1.01585 1.20718 0.94437 0.96391 0.93666 1.21414 0.97168 0.81880 0.98136 1.45920 1.48972 1.13893 1.24297 1.16774 0.80162 0.82441 0.82651 1.90755 1.39250 1.77464 1.38052 1.23391 1.03045 0.96920 0.92474 1.71239 1.15271 1.09637 1.26945 1.27552 0.99395 0.94681 0.87412 1.47832 1.30808 1.12451 1.18572 1.22763 1.07767 0.78601 0.97255 1.74249 1.16819 0.96348 1.25477 1.21847 0.95542 0.93892 1.03284 1.21112 0.93916 0.94510 0.89374 1.44293 1.44606 1.15373 1.28875 1.19538 1.10276 0.92589 1.16672 0.91117 1.25855 0.99091 0.96712 1.03356 1.70236 1.41993 1.05602 1.40590 0.85317 0.78272 0.76705 0.79994 1.20114 1.22423 1.20110 1.20400 0.89780 0.85956 0.98083 1.21851 0.96679 0.99494 0.96808 0.89063 0.93672 0.92904 0.91634 0.91398 0.93750 0.91215 0.73150 0.70150 0.87849 0.88545 0.83452 0.89019 0.90469 0.97372 0.92133 0.94412 0.93409 0.99717 0.92185 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.85 16 2 O -0.41 -10.46 6.73 -148.98 -1.00 -11.46 16 3 C 0.08 1.93 4.80 71.98 0.35 2.28 16 4 C -0.05 -1.67 0.51 -52.16 -0.03 -1.70 16 5 C 0.14 5.14 3.80 86.38 0.33 5.46 16 6 N -0.67 -25.09 4.62 -465.95 -2.15 -27.24 16 7 C 0.60 24.59 7.83 86.79 0.68 25.27 16 8 O -0.58 -27.77 17.09 -3.90 -0.07 -27.84 16 9 C 0.12 4.24 7.96 137.13 1.09 5.33 16 10 N -0.50 -14.12 11.09 -193.04 -2.14 -16.26 16 11 C 0.20 3.39 12.62 180.30 2.27 5.67 16 12 N -0.30 -5.64 3.72 -373.46 -1.39 -7.03 16 13 C 0.07 0.41 11.38 127.77 1.45 1.87 16 14 N -0.29 -9.08 12.08 -52.44 -0.63 -9.72 16 15 C -0.11 -3.36 4.91 30.67 0.15 -3.21 16 16 C 0.14 5.74 6.05 86.37 0.52 6.26 16 17 N -0.61 -31.51 3.00 -699.95 -2.10 -33.61 16 18 C -0.26 -14.70 9.58 84.03 0.81 -13.90 16 19 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 20 C -0.06 -3.20 4.92 84.86 0.42 -2.78 16 21 N -0.94 -58.53 11.18 21.65 0.24 -58.29 16 22 Si 0.97 46.29 29.59 68.60 2.03 48.32 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 26 C 0.18 9.40 4.81 86.22 0.41 9.81 16 27 C -0.11 -4.27 4.57 30.53 0.14 -4.13 16 28 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.04 2.05 4.99 -2.38 -0.01 2.03 16 34 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.42 14.82 4.41 -92.71 -0.41 14.41 16 36 H 0.28 0.77 8.06 -2.91 -0.02 0.74 16 37 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.15 -0.54 8.14 -2.38 -0.02 -0.56 16 40 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 41 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.01 0.38 6.69 -2.39 -0.02 0.36 16 43 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 44 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 45 H 0.05 2.78 6.05 -2.39 -0.01 2.77 16 46 H -0.02 -0.87 6.70 -2.39 -0.02 -0.89 16 47 H 0.06 2.29 6.49 -2.38 -0.02 2.28 16 48 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -88.12 380.41 3.20 -84.92 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.57 Total: 20.11 kcal Atomic # 6 Polarization: 28.25 SS G_CDS: 9.85 Total: 38.09 kcal Atomic # 7 Polarization: -143.98 SS G_CDS: -8.18 Total: -152.15 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -1.07 Total: -39.30 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -88.12 3.20 -84.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162246825.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.231 kcal (2) G-P(sol) polarization free energy of solvation -88.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds