Wall clock time and date at job start Tue Mar 31 2020 21:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 113.99932 * 2 1 4 4 C 1.52998 * 109.47220 * 180.02562 * 3 2 1 5 5 C 1.52991 * 109.46491 * 60.02535 * 4 3 2 6 6 N 1.46503 * 109.47076 * 299.97684 * 5 4 3 7 7 C 1.34780 * 120.00187 * 180.02562 * 6 5 4 8 8 O 1.21599 * 119.99679 * 359.97438 * 7 6 5 9 9 C 1.47524 * 119.99867 * 179.97438 * 7 6 5 10 10 C 1.36593 * 125.76818 * 179.71378 * 9 7 6 11 11 N 1.34807 * 106.84000 * 179.89670 * 10 9 7 12 12 C 1.46505 * 126.59678 * 180.13507 * 11 10 9 13 13 N 1.40208 * 106.81028 * 0.35243 * 11 10 9 14 14 N 1.28756 * 108.36861 * 359.77414 * 13 11 10 15 15 C 1.53042 * 109.45895 * 179.97438 * 4 3 2 16 16 C 1.53192 * 109.31216 * 58.64112 * 15 4 3 17 17 N 1.46930 * 108.77834 * 54.63480 * 16 15 4 18 18 C 1.36932 * 120.62872 * 126.36699 * 17 16 15 19 19 H 1.08002 * 120.00663 * 332.45264 * 18 17 16 20 20 C 1.38819 * 119.99763 * 152.17982 * 18 17 16 21 21 N 1.31619 * 119.99653 * 343.16079 * 20 18 17 22 22 Si 1.86799 * 120.00056 * 163.16209 * 20 18 17 23 23 H 1.48498 * 109.47033 * 89.99898 * 22 20 18 24 24 H 1.48497 * 109.46906 * 209.99748 * 22 20 18 25 25 H 1.48496 * 109.47329 * 330.00182 * 22 20 18 26 26 C 1.46922 * 118.73694 * 306.64373 * 17 16 15 27 27 C 1.52760 * 109.00877 * 53.30539 * 26 17 16 28 28 H 1.08996 * 109.47180 * 60.00463 * 1 2 3 29 29 H 1.09008 * 109.46974 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47595 * 300.00270 * 1 2 3 31 31 H 1.08996 * 109.47265 * 59.99728 * 3 2 1 32 32 H 1.09003 * 109.46761 * 299.99571 * 3 2 1 33 33 H 1.08997 * 109.47452 * 59.96970 * 5 4 3 34 34 H 1.08996 * 109.47457 * 179.97438 * 5 4 3 35 35 H 0.97000 * 120.00052 * 359.97438 * 6 5 4 36 36 H 1.08002 * 126.57920 * 0.03160 * 10 9 7 37 37 H 1.09003 * 109.46726 * 270.23698 * 12 11 10 38 38 H 1.09001 * 109.47136 * 30.23619 * 12 11 10 39 39 H 1.09002 * 109.47479 * 150.24195 * 12 11 10 40 40 H 1.09002 * 109.49976 * 298.69035 * 15 4 3 41 41 H 1.09002 * 109.49778 * 178.59122 * 15 4 3 42 42 H 1.08997 * 109.58711 * 294.84701 * 16 15 4 43 43 H 1.09004 * 109.70548 * 174.49237 * 16 15 4 44 44 H 0.97007 * 119.99830 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.58958 * 173.14351 * 26 17 16 46 46 H 1.09005 * 109.58698 * 293.56931 * 26 17 16 47 47 H 1.08996 * 109.56719 * 185.54717 * 27 26 17 48 48 H 1.09007 * 109.38352 * 65.51663 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9862 0.4263 -1.2505 6 7 3.3907 -0.9123 -1.2508 7 6 3.6497 -1.7649 -2.2620 8 8 4.3773 -1.4229 -3.1743 9 6 3.0505 -3.1130 -2.2619 10 6 3.2277 -4.0655 -3.2247 11 7 2.5137 -5.1436 -2.8436 12 6 2.4013 -6.4153 -3.5622 13 7 1.8954 -4.8120 -1.6297 14 7 2.2335 -3.6095 -1.3173 15 6 4.1575 2.5830 -0.0013 16 6 3.6766 3.3520 1.2333 17 7 3.9781 2.5580 2.4322 18 6 4.6878 3.1022 3.4691 19 1 5.3932 3.8983 3.2818 20 6 4.4964 2.6346 4.7621 21 7 3.4276 1.9239 5.0533 22 14 5.7558 3.0139 6.0885 23 1 5.3970 4.2879 6.7619 24 1 5.7708 1.9139 7.0859 25 1 7.1008 3.1416 5.4721 26 6 3.5088 1.1671 2.4947 27 6 3.9868 0.4243 1.2484 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6885 1.8464 0.8899 32 1 1.6885 1.8463 -0.8901 33 1 3.6637 0.9674 -2.1400 34 1 5.0728 0.3406 -1.2514 35 1 2.8106 -1.1852 -0.5228 36 1 3.8267 -3.9734 -4.1187 37 1 1.5596 -6.3689 -4.2534 38 1 3.3195 -6.6000 -4.1197 39 1 2.2408 -7.2232 -2.8483 40 1 3.8543 3.1157 -0.9026 41 1 5.2439 2.4978 0.0235 42 1 2.6014 3.5170 1.1651 43 1 4.1905 4.3116 1.2918 44 1 3.2940 1.5968 5.9568 45 1 3.9140 0.6844 3.3840 46 1 2.4195 1.1503 2.5315 47 1 3.5622 -0.5795 1.2365 48 1 5.0748 0.3590 1.2611 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162247013.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:11 Heat of formation + Delta-G solvation = 45.678704 kcal Electronic energy + Delta-G solvation = -30625.085147 eV Core-core repulsion = 26525.593463 eV Total energy + Delta-G solvation = -4099.491684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.30705 -39.82176 -38.51360 -36.63363 -34.93188 -34.69274 -32.95715 -31.21632 -30.64878 -29.91704 -28.28123 -27.29149 -26.69039 -24.99424 -24.19890 -23.10302 -22.36831 -22.18608 -20.80164 -20.23087 -18.52491 -17.95638 -16.67596 -16.43607 -16.31568 -15.94938 -15.69883 -15.57271 -14.90123 -14.77615 -14.67658 -14.39957 -14.03005 -13.72825 -13.66133 -13.43367 -13.36881 -13.13946 -13.03666 -12.48613 -12.26821 -12.24186 -11.88163 -11.52516 -11.38799 -11.25716 -11.13642 -10.90146 -10.67088 -10.59115 -10.48063 -10.20876 -10.11380 -9.98214 -9.83947 -9.50801 -9.44239 -9.36498 -9.23101 -8.67034 -8.39711 -6.61501 -5.74594 -3.16595 0.96825 1.69497 1.83290 3.33556 3.40186 3.41410 3.47585 3.49973 3.98135 4.11073 4.20204 4.53397 4.56025 4.66753 4.84065 4.90156 5.08459 5.17227 5.20725 5.39346 5.45140 5.52351 5.56582 5.62618 5.68382 5.74063 5.82895 5.90735 5.96649 6.00709 6.10132 6.11189 6.20980 6.34165 6.48126 6.67020 6.72883 6.75147 6.80853 6.90251 6.96629 7.41230 7.47522 7.71066 7.74819 7.84316 8.00879 8.46081 8.49434 9.25845 9.89363 10.45702 11.33652 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016648 B = 0.002857 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.518149 B = 9796.501260 C =10078.766709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.389 6.389 3 C 0.069 3.931 4 C -0.058 4.058 5 C 0.133 3.867 6 N -0.690 5.690 7 C 0.595 3.405 8 O -0.556 6.556 9 C -0.094 4.094 10 C 0.087 3.913 11 N -0.368 5.368 12 C 0.089 3.911 13 N -0.069 5.069 14 N -0.195 5.195 15 C -0.120 4.120 16 C 0.144 3.856 17 N -0.591 5.591 18 C -0.252 4.252 19 H 0.064 0.936 20 C 0.002 3.998 21 N -0.901 5.901 22 Si 0.900 3.100 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.173 3.827 27 C -0.127 4.127 28 H 0.033 0.967 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.040 0.960 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.421 0.579 36 H 0.204 0.796 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.018 0.982 43 H 0.055 0.945 44 H 0.253 0.747 45 H 0.086 0.914 46 H 0.020 0.980 47 H 0.056 0.944 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.192 -12.993 -18.772 23.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.308 6.308 3 C -0.007 4.007 4 C -0.059 4.059 5 C 0.009 3.991 6 N -0.346 5.346 7 C 0.379 3.621 8 O -0.435 6.435 9 C -0.233 4.233 10 C -0.070 4.070 11 N -0.153 5.153 12 C -0.053 4.053 13 N -0.050 5.050 14 N -0.069 5.069 15 C -0.160 4.160 16 C 0.018 3.982 17 N -0.314 5.314 18 C -0.381 4.381 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.730 3.270 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.047 3.953 27 C -0.166 4.166 28 H 0.052 0.948 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.265 0.735 36 H 0.220 0.780 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.035 0.965 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.038 0.962 47 H 0.075 0.925 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.563 -13.493 -18.093 23.027 hybrid contribution 0.688 0.364 0.112 0.786 sum -3.875 -13.128 -17.981 22.598 Atomic orbital electron populations 1.22652 0.81319 1.02326 0.99600 1.87518 1.19402 1.28556 1.95333 1.22765 0.93082 0.84286 1.00583 1.20786 0.93157 0.96764 0.95166 1.21483 0.97889 0.81944 0.97790 1.46167 1.49373 1.14105 1.24964 1.16797 0.80420 0.82237 0.82670 1.90772 1.38803 1.77156 1.36772 1.21594 1.07192 0.98802 0.95761 1.23345 0.96402 0.86451 1.00782 1.50387 1.33627 1.12876 1.18439 1.22165 1.04478 0.81517 0.97094 1.82030 1.18190 1.08663 0.96072 1.74710 1.08263 1.02457 1.21460 1.21993 1.00879 0.93678 0.99413 1.20921 0.96733 0.93943 0.86652 1.44052 1.64050 1.07871 1.15464 1.19159 1.14907 1.18431 0.85638 0.91779 1.25027 0.96720 1.00862 0.97023 1.70033 1.25187 1.40110 1.19231 0.86334 0.81507 0.77396 0.81743 1.21502 1.21615 1.20534 1.20689 0.96037 0.83978 0.94575 1.22121 1.00483 0.98311 0.95677 0.94850 0.89962 0.93912 0.91217 0.94172 0.91972 0.91415 0.73471 0.77952 0.89335 0.88494 0.88120 0.92663 0.91217 0.96469 0.92619 0.93698 0.89582 0.96161 0.92506 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 11.01 101.05 1.11 1.60 16 2 O -0.39 -6.09 6.77 -35.23 -0.24 -6.33 16 3 C 0.07 1.10 4.04 37.16 0.15 1.25 16 4 C -0.06 -0.96 0.51 -154.47 -0.08 -1.04 16 5 C 0.13 2.06 4.56 -4.04 -0.02 2.04 16 6 N -0.69 -10.88 4.60 -61.35 -0.28 -11.17 16 7 C 0.60 9.35 7.82 -12.47 -0.10 9.25 16 8 O -0.56 -9.67 16.86 5.28 0.09 -9.58 16 9 C -0.09 -1.29 6.99 -83.55 -0.58 -1.87 16 10 C 0.09 0.86 11.31 -16.84 -0.19 0.67 16 11 N -0.37 -3.29 4.03 -67.85 -0.27 -3.57 16 12 C 0.09 0.29 11.51 59.85 0.69 0.98 16 13 N -0.07 -0.89 13.78 60.35 0.83 -0.06 16 14 N -0.20 -2.88 12.04 32.85 0.40 -2.48 16 15 C -0.12 -1.98 4.90 -26.61 -0.13 -2.11 16 16 C 0.14 2.89 6.05 -3.71 -0.02 2.86 16 17 N -0.59 -14.45 3.00 -172.58 -0.52 -14.96 16 18 C -0.25 -6.83 9.58 -15.06 -0.14 -6.98 16 19 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 20 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 21 N -0.90 -26.10 11.18 55.49 0.62 -25.48 16 22 Si 0.90 21.77 29.59 -169.99 -5.03 16.74 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C 0.17 4.07 4.81 -3.93 -0.02 4.05 16 27 C -0.13 -2.45 4.58 -26.83 -0.12 -2.57 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.27 4.99 -51.93 -0.26 1.01 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.42 6.88 4.37 -40.82 -0.18 6.70 16 36 H 0.20 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.10 0.08 8.14 -51.93 -0.42 -0.35 16 39 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.02 0.35 6.69 -51.93 -0.35 0.00 16 43 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.09 2.32 6.05 -51.93 -0.31 2.01 16 46 H 0.02 0.50 6.70 -51.93 -0.35 0.16 16 47 H 0.06 1.07 6.49 -51.93 -0.34 0.74 16 48 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 380.98 15.07 5.74 5.74 Total: -1.00 -33.79 380.98 -5.45 -39.24 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -7.24 Total: 3.80 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 0.46 Total: 8.11 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 0.77 Total: -57.72 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.15 Total: -15.91 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.79 -5.45 -39.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162247013.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.921 kcal (2) G-P(sol) polarization free energy of solvation -33.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds