Wall clock time and date at job start Tue Mar 31 2020 21:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 113.99932 * 2 1 4 4 C 1.52998 * 109.47220 * 180.02562 * 3 2 1 5 5 C 1.52991 * 109.46491 * 60.02535 * 4 3 2 6 6 N 1.46503 * 109.47076 * 299.97684 * 5 4 3 7 7 C 1.34780 * 120.00187 * 180.02562 * 6 5 4 8 8 O 1.21599 * 119.99679 * 359.97438 * 7 6 5 9 9 C 1.47524 * 119.99867 * 179.97438 * 7 6 5 10 10 C 1.36593 * 125.76818 * 179.71378 * 9 7 6 11 11 N 1.34807 * 106.84000 * 179.89670 * 10 9 7 12 12 C 1.46505 * 126.59678 * 180.13507 * 11 10 9 13 13 N 1.40208 * 106.81028 * 0.35243 * 11 10 9 14 14 N 1.28756 * 108.36861 * 359.77414 * 13 11 10 15 15 C 1.53042 * 109.45895 * 179.97438 * 4 3 2 16 16 C 1.53192 * 109.31216 * 58.64112 * 15 4 3 17 17 N 1.46930 * 108.77834 * 54.63480 * 16 15 4 18 18 C 1.36932 * 120.62872 * 126.36699 * 17 16 15 19 19 H 1.08002 * 120.00663 * 332.45264 * 18 17 16 20 20 C 1.38819 * 119.99763 * 152.17982 * 18 17 16 21 21 N 1.31619 * 119.99653 * 343.16079 * 20 18 17 22 22 Si 1.86799 * 120.00056 * 163.16209 * 20 18 17 23 23 H 1.48498 * 109.47033 * 89.99898 * 22 20 18 24 24 H 1.48497 * 109.46906 * 209.99748 * 22 20 18 25 25 H 1.48496 * 109.47329 * 330.00182 * 22 20 18 26 26 C 1.46922 * 118.73694 * 306.64373 * 17 16 15 27 27 C 1.52760 * 109.00877 * 53.30539 * 26 17 16 28 28 H 1.08996 * 109.47180 * 60.00463 * 1 2 3 29 29 H 1.09008 * 109.46974 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47595 * 300.00270 * 1 2 3 31 31 H 1.08996 * 109.47265 * 59.99728 * 3 2 1 32 32 H 1.09003 * 109.46761 * 299.99571 * 3 2 1 33 33 H 1.08997 * 109.47452 * 59.96970 * 5 4 3 34 34 H 1.08996 * 109.47457 * 179.97438 * 5 4 3 35 35 H 0.97000 * 120.00052 * 359.97438 * 6 5 4 36 36 H 1.08002 * 126.57920 * 0.03160 * 10 9 7 37 37 H 1.09003 * 109.46726 * 270.23698 * 12 11 10 38 38 H 1.09001 * 109.47136 * 30.23619 * 12 11 10 39 39 H 1.09002 * 109.47479 * 150.24195 * 12 11 10 40 40 H 1.09002 * 109.49976 * 298.69035 * 15 4 3 41 41 H 1.09002 * 109.49778 * 178.59122 * 15 4 3 42 42 H 1.08997 * 109.58711 * 294.84701 * 16 15 4 43 43 H 1.09004 * 109.70548 * 174.49237 * 16 15 4 44 44 H 0.97007 * 119.99830 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.58958 * 173.14351 * 26 17 16 46 46 H 1.09005 * 109.58698 * 293.56931 * 26 17 16 47 47 H 1.08996 * 109.56719 * 185.54717 * 27 26 17 48 48 H 1.09007 * 109.38352 * 65.51663 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9862 0.4263 -1.2505 6 7 3.3907 -0.9123 -1.2508 7 6 3.6497 -1.7649 -2.2620 8 8 4.3773 -1.4229 -3.1743 9 6 3.0505 -3.1130 -2.2619 10 6 3.2277 -4.0655 -3.2247 11 7 2.5137 -5.1436 -2.8436 12 6 2.4013 -6.4153 -3.5622 13 7 1.8954 -4.8120 -1.6297 14 7 2.2335 -3.6095 -1.3173 15 6 4.1575 2.5830 -0.0013 16 6 3.6766 3.3520 1.2333 17 7 3.9781 2.5580 2.4322 18 6 4.6878 3.1022 3.4691 19 1 5.3932 3.8983 3.2818 20 6 4.4964 2.6346 4.7621 21 7 3.4276 1.9239 5.0533 22 14 5.7558 3.0139 6.0885 23 1 5.3970 4.2879 6.7619 24 1 5.7708 1.9139 7.0859 25 1 7.1008 3.1416 5.4721 26 6 3.5088 1.1671 2.4947 27 6 3.9868 0.4243 1.2484 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6885 1.8464 0.8899 32 1 1.6885 1.8463 -0.8901 33 1 3.6637 0.9674 -2.1400 34 1 5.0728 0.3406 -1.2514 35 1 2.8106 -1.1852 -0.5228 36 1 3.8267 -3.9734 -4.1187 37 1 1.5596 -6.3689 -4.2534 38 1 3.3195 -6.6000 -4.1197 39 1 2.2408 -7.2232 -2.8483 40 1 3.8543 3.1157 -0.9026 41 1 5.2439 2.4978 0.0235 42 1 2.6014 3.5170 1.1651 43 1 4.1905 4.3116 1.2918 44 1 3.2940 1.5968 5.9568 45 1 3.9140 0.6844 3.3840 46 1 2.4195 1.1503 2.5315 47 1 3.5622 -0.5795 1.2365 48 1 5.0748 0.3590 1.2611 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162247013.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:09 Heat of formation + Delta-G solvation = 21.310741 kcal Electronic energy + Delta-G solvation = -30626.141822 eV Core-core repulsion = 26525.593463 eV Total energy + Delta-G solvation = -4100.548358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.15975 -41.15455 -39.79910 -38.02491 -36.26271 -35.58099 -34.53897 -32.64637 -31.89457 -31.61451 -29.05473 -28.58461 -27.95027 -26.22788 -25.84865 -24.32630 -23.79365 -23.12398 -22.38498 -21.32924 -19.92047 -19.18129 -18.36586 -17.37373 -17.24276 -17.13852 -16.89183 -16.73504 -16.68176 -16.03731 -15.75138 -15.53279 -15.42012 -15.22481 -14.98852 -14.71302 -14.50070 -14.07854 -13.99389 -13.93413 -13.71831 -13.33824 -13.14722 -13.07434 -12.94907 -12.59298 -12.52868 -12.36552 -12.23017 -12.17623 -11.95837 -11.78828 -11.42280 -11.32442 -11.28689 -11.07575 -11.02921 -10.53521 -10.42515 -10.36478 -9.86101 -8.61771 -7.83760 -5.27943 0.19843 0.67160 1.23547 1.46541 1.48851 1.57946 2.22240 2.31287 2.53352 2.85777 3.29776 3.31915 3.57247 3.71849 3.77182 3.87033 3.96961 4.01815 4.05479 4.31551 4.39947 4.45311 4.52342 4.53094 4.56814 4.63061 4.64150 4.69828 4.72406 4.75253 4.82849 4.87108 4.89288 4.96310 5.09284 5.19679 5.25812 5.29402 5.41935 5.50120 5.51821 5.60337 5.68621 5.82504 6.27137 6.42752 6.62681 6.99293 7.18938 7.26586 7.91425 8.42368 9.22183 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016648 B = 0.002857 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.518149 B = 9796.501260 C =10078.766709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.402 6.402 3 C 0.076 3.924 4 C -0.050 4.050 5 C 0.140 3.860 6 N -0.695 5.695 7 C 0.596 3.404 8 O -0.577 6.577 9 C -0.127 4.127 10 C 0.109 3.891 11 N -0.352 5.352 12 C 0.075 3.925 13 N -0.097 5.097 14 N -0.226 5.226 15 C -0.109 4.109 16 C 0.140 3.860 17 N -0.609 5.609 18 C -0.259 4.259 19 H 0.067 0.933 20 C -0.052 4.052 21 N -0.934 5.934 22 Si 0.963 3.037 23 H -0.284 1.284 24 H -0.296 1.296 25 H -0.271 1.271 26 C 0.186 3.814 27 C -0.111 4.111 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.036 0.964 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.418 0.582 36 H 0.240 0.760 37 H 0.109 0.891 38 H 0.130 0.870 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.020 0.980 43 H 0.058 0.942 44 H 0.248 0.752 45 H 0.045 0.955 46 H 0.000 1.000 47 H 0.057 0.943 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.715 -13.727 -21.727 25.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.321 6.321 3 C 0.000 4.000 4 C -0.051 4.051 5 C 0.017 3.983 6 N -0.350 5.350 7 C 0.381 3.619 8 O -0.457 6.457 9 C -0.267 4.267 10 C -0.050 4.050 11 N -0.137 5.137 12 C -0.064 4.064 13 N -0.077 5.077 14 N -0.099 5.099 15 C -0.149 4.149 16 C 0.014 3.986 17 N -0.332 5.332 18 C -0.389 4.389 19 H 0.085 0.915 20 C -0.248 4.248 21 N -0.580 5.580 22 Si 0.791 3.209 23 H -0.211 1.211 24 H -0.222 1.222 25 H -0.196 1.196 26 C 0.061 3.939 27 C -0.150 4.150 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.262 0.738 36 H 0.256 0.744 37 H 0.127 0.873 38 H 0.148 0.852 39 H 0.125 0.875 40 H 0.111 0.889 41 H 0.086 0.914 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.018 0.982 47 H 0.075 0.925 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.102 -14.246 -21.075 25.767 hybrid contribution 0.485 0.502 0.934 1.166 sum -3.617 -13.744 -20.141 24.650 Atomic orbital electron populations 1.22781 0.79979 1.03205 1.00180 1.87509 1.20886 1.28300 1.95404 1.22624 0.92506 0.84530 1.00363 1.20680 0.93753 0.96549 0.94115 1.21364 0.97645 0.82045 0.97288 1.46199 1.49393 1.14282 1.25091 1.17017 0.79952 0.82846 0.82070 1.90745 1.39796 1.77807 1.37380 1.21567 1.08803 0.98916 0.97425 1.23837 0.95246 0.85373 1.00498 1.50752 1.31688 1.14077 1.17156 1.22723 1.07159 0.79123 0.97395 1.81924 1.19387 1.08250 0.98157 1.74674 1.09246 1.03383 1.22644 1.21875 1.00627 0.93359 0.99000 1.21099 0.97032 0.94101 0.86325 1.44288 1.64066 1.08587 1.16293 1.19506 1.14867 1.18020 0.86502 0.91488 1.25762 0.98398 1.01469 0.99132 1.70192 1.26932 1.41671 1.19204 0.85345 0.79609 0.76851 0.79064 1.21113 1.22222 1.19626 1.20375 0.94491 0.84189 0.94886 1.21866 0.99644 0.98192 0.95333 0.92981 0.89022 0.94529 0.93884 0.91766 0.90554 0.91763 0.73850 0.74391 0.87301 0.85159 0.87485 0.88883 0.91443 0.96201 0.92396 0.94337 0.93659 0.98197 0.92471 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 11.01 113.37 1.25 2.13 16 2 O -0.40 -12.44 6.77 -148.98 -1.01 -13.44 16 3 C 0.08 2.36 4.04 71.98 0.29 2.65 16 4 C -0.05 -1.61 0.51 -52.16 -0.03 -1.64 16 5 C 0.14 4.13 4.56 86.38 0.39 4.53 16 6 N -0.69 -21.36 4.60 -466.28 -2.15 -23.51 16 7 C 0.60 18.09 7.82 86.69 0.68 18.77 16 8 O -0.58 -19.13 16.86 -4.03 -0.07 -19.19 16 9 C -0.13 -3.34 6.99 40.82 0.29 -3.06 16 10 C 0.11 1.87 11.31 83.85 0.95 2.81 16 11 N -0.35 -5.43 4.03 -368.58 -1.49 -6.91 16 12 C 0.07 0.23 11.51 127.77 1.47 1.70 16 13 N -0.10 -2.42 13.78 37.02 0.51 -1.91 16 14 N -0.23 -6.62 12.04 -50.00 -0.60 -7.22 16 15 C -0.11 -3.41 4.90 30.67 0.15 -3.26 16 16 C 0.14 5.52 6.05 86.36 0.52 6.04 16 17 N -0.61 -30.32 3.00 -699.92 -2.10 -32.42 16 18 C -0.26 -14.27 9.58 84.04 0.81 -13.46 16 19 H 0.07 3.59 7.88 -2.91 -0.02 3.56 16 20 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16 21 N -0.93 -56.21 11.18 21.65 0.24 -55.97 16 22 Si 0.96 45.70 29.59 68.60 2.03 47.73 16 23 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 25 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 26 C 0.19 9.14 4.81 86.22 0.41 9.56 16 27 C -0.11 -4.38 4.58 30.53 0.14 -4.24 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.04 1.57 4.99 -2.39 -0.01 1.56 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.42 13.62 4.37 -92.71 -0.41 13.21 16 36 H 0.24 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.13 -0.40 8.14 -2.39 -0.02 -0.42 16 39 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.09 2.26 8.14 -2.39 -0.02 2.25 16 41 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.02 0.79 6.69 -2.39 -0.02 0.77 16 43 H 0.06 2.23 7.93 -2.39 -0.02 2.21 16 44 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 45 H 0.04 2.58 6.05 -2.39 -0.01 2.56 16 46 H 0.00 0.00 6.70 -2.38 -0.02 -0.01 16 47 H 0.06 2.23 6.49 -2.39 -0.02 2.21 16 48 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -76.37 380.98 3.68 -72.69 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.57 Total: 20.19 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 7.74 Total: 19.97 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -5.58 Total: -127.94 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -1.08 Total: -32.64 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -76.37 3.68 -72.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162247013.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.001 kcal (2) G-P(sol) polarization free energy of solvation -76.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds