Wall clock time and date at job start Tue Mar 31 2020 21:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99801 * 2 1 4 4 C 1.53006 * 109.47062 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.45914 * 300.00334 * 4 3 2 6 6 N 1.46499 * 109.47191 * 60.02709 * 5 4 3 7 7 C 1.34782 * 120.00075 * 179.97438 * 6 5 4 8 8 O 1.21281 * 119.99719 * 359.72307 * 7 6 5 9 9 C 1.50699 * 120.00109 * 179.72185 * 7 6 5 10 10 N 1.46502 * 109.46864 * 180.02562 * 9 7 6 11 11 N 1.28601 * 124.61572 * 269.69693 * 10 9 7 12 12 C 1.31384 * 108.71385 * 179.83437 * 11 10 9 13 13 C 1.39672 * 105.90114 * 0.41633 * 12 11 10 14 14 N 1.28597 * 124.62079 * 90.00367 * 10 9 7 15 15 C 1.53031 * 109.44690 * 59.96820 * 4 3 2 16 16 C 1.53191 * 109.31535 * 181.37706 * 15 4 3 17 17 N 1.46923 * 108.77559 * 305.36871 * 16 15 4 18 18 C 1.36942 * 120.63313 * 233.58486 * 17 16 15 19 19 H 1.08007 * 119.99595 * 27.69217 * 18 17 16 20 20 C 1.38806 * 120.00313 * 207.69970 * 18 17 16 21 21 N 1.31625 * 120.00178 * 17.34763 * 20 18 17 22 22 Si 1.86799 * 120.00144 * 197.35496 * 20 18 17 23 23 H 1.48494 * 109.47014 * 59.99585 * 22 20 18 24 24 H 1.48504 * 109.47194 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46818 * 299.99495 * 22 20 18 26 26 C 1.46926 * 118.74013 * 53.60311 * 17 16 15 27 27 C 1.53037 * 109.45791 * 180.02562 * 4 3 2 28 28 H 1.08998 * 109.47416 * 299.99648 * 1 2 3 29 29 H 1.09000 * 109.47466 * 59.99363 * 1 2 3 30 30 H 1.08999 * 109.47304 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47320 * 60.00373 * 3 2 1 32 32 H 1.08999 * 109.47725 * 300.00561 * 3 2 1 33 33 H 1.09005 * 109.47327 * 300.02404 * 5 4 3 34 34 H 1.08997 * 109.47465 * 180.02562 * 5 4 3 35 35 H 0.96995 * 120.00131 * 359.72074 * 6 5 4 36 36 H 1.08991 * 109.47136 * 300.00139 * 9 7 6 37 37 H 1.08997 * 109.46758 * 59.99961 * 9 7 6 38 38 H 1.08000 * 127.04822 * 180.16395 * 12 11 10 39 39 H 1.08003 * 127.05206 * 179.77010 * 13 12 11 40 40 H 1.08998 * 109.50215 * 301.33380 * 15 4 3 41 41 H 1.09006 * 109.49862 * 61.42840 * 15 4 3 42 42 H 1.09000 * 109.58875 * 185.57970 * 16 15 4 43 43 H 1.09000 * 109.70189 * 65.22129 * 16 15 4 44 44 H 0.97000 * 120.00327 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.58989 * 186.60675 * 26 17 16 46 46 H 1.08999 * 109.70659 * 66.25069 * 26 17 16 47 47 H 1.08999 * 109.49711 * 298.57675 * 27 4 3 48 48 H 1.08999 * 109.50265 * 58.64438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9871 0.4251 1.2483 6 7 3.3916 -0.9134 1.2478 7 6 3.6514 -1.7669 2.2581 8 8 4.3820 -1.4285 3.1650 9 6 3.0338 -3.1416 2.2608 10 7 3.4674 -3.8693 3.4561 11 7 4.5150 -4.6125 3.5190 12 6 4.6082 -5.1079 4.7323 13 6 3.5069 -4.6119 5.4337 14 7 2.8492 -3.8564 4.5836 15 6 3.9858 0.4247 -1.2502 16 6 5.5103 0.2756 -1.2306 17 7 6.1139 1.6070 -1.0837 18 6 7.0595 2.0462 -1.9716 19 1 7.0626 1.6738 -2.9854 20 6 8.0141 2.9698 -1.5685 21 7 8.2371 3.1692 -0.2867 22 14 8.9822 3.9301 -2.8453 23 1 8.0466 4.7232 -3.6824 24 1 9.9312 4.8452 -2.1617 25 1 9.7381 2.9857 -3.7066 26 6 5.6840 2.4582 0.0340 27 6 4.1575 2.5829 0.0000 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8465 -0.8899 33 1 3.6653 0.9656 2.1385 34 1 5.0737 0.3393 1.2483 35 1 2.8075 -1.1841 0.5223 36 1 1.9476 -3.0519 2.2645 37 1 3.3506 -3.6838 1.3699 38 1 5.3763 -5.7672 5.1087 39 1 3.2490 -4.8087 6.4639 40 1 3.5238 -0.5624 -1.2621 41 1 3.6859 0.9779 -2.1403 42 1 5.8453 -0.1766 -2.1641 43 1 5.8071 -0.3546 -0.3922 44 1 8.9039 3.8149 -0.0050 45 1 6.1336 3.4461 -0.0650 46 1 5.9930 2.0092 0.9780 47 1 3.8560 3.1156 -0.9019 48 1 3.8173 3.1321 0.8779 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162288713.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:57 Heat of formation + Delta-G solvation = 63.769578 kcal Electronic energy + Delta-G solvation = -30702.461055 eV Core-core repulsion = 26603.753850 eV Total energy + Delta-G solvation = -4098.707205 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.55222 -40.12960 -38.72570 -37.17978 -34.63985 -33.78736 -33.04841 -32.42327 -31.11788 -29.91089 -28.75652 -27.71208 -26.20356 -25.48777 -23.91111 -22.91036 -22.39457 -21.98739 -20.93823 -20.33989 -18.67906 -17.63280 -17.51120 -16.58292 -16.29406 -16.01760 -15.76328 -15.70257 -15.37482 -15.14860 -14.81377 -14.61334 -14.37125 -13.87851 -13.72151 -13.63490 -13.34958 -12.96171 -12.82850 -12.51731 -12.29710 -11.93594 -11.66816 -11.66218 -11.53212 -11.31758 -10.97616 -10.81498 -10.72125 -10.50329 -10.33066 -10.30779 -10.26044 -10.18034 -9.92751 -9.77340 -9.55297 -9.51795 -9.25750 -8.77737 -8.43849 -6.67098 -5.78831 -3.21034 1.72387 2.13090 2.47798 2.61348 3.24746 3.38141 3.44333 3.44947 3.68788 4.11622 4.49381 4.71291 4.72850 4.78172 4.87633 4.97586 5.02873 5.17451 5.21729 5.26697 5.31153 5.38335 5.46075 5.50498 5.53662 5.61476 5.67345 5.95264 5.98859 6.05085 6.13668 6.19897 6.28598 6.42503 6.48542 6.53987 6.56897 6.64354 6.69327 6.78128 6.95806 7.03648 7.30686 7.63733 7.69284 7.78985 8.30429 8.32136 8.44423 9.20724 9.84255 10.40694 11.29628 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012747 B = 0.003199 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.121355 B = 8750.200817 C =10276.491199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.395 6.395 3 C 0.071 3.929 4 C -0.057 4.057 5 C 0.132 3.868 6 N -0.701 5.701 7 C 0.494 3.506 8 O -0.529 6.529 9 C 0.123 3.877 10 N -0.140 5.140 11 N -0.279 5.279 12 C -0.028 4.028 13 C -0.028 4.028 14 N -0.283 5.283 15 C -0.117 4.117 16 C 0.143 3.857 17 N -0.590 5.590 18 C -0.254 4.254 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.170 3.830 27 C -0.128 4.128 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.410 0.590 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.197 0.803 39 H 0.196 0.804 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.020 0.980 44 H 0.255 0.745 45 H 0.090 0.910 46 H 0.023 0.977 47 H 0.064 0.936 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.346 -11.499 4.499 21.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.314 6.314 3 C -0.005 4.005 4 C -0.058 4.058 5 C 0.009 3.991 6 N -0.359 5.359 7 C 0.276 3.724 8 O -0.405 6.405 9 C -0.001 4.001 10 N -0.041 5.041 11 N -0.119 5.119 12 C -0.211 4.211 13 C -0.211 4.211 14 N -0.124 5.124 15 C -0.156 4.156 16 C 0.016 3.984 17 N -0.313 5.313 18 C -0.384 4.384 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.545 5.545 22 Si 0.732 3.268 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.044 3.956 27 C -0.168 4.168 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.251 0.749 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.214 0.786 39 H 0.213 0.787 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.038 0.962 44 H 0.065 0.935 45 H 0.108 0.892 46 H 0.041 0.959 47 H 0.082 0.918 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.989 -10.603 4.049 20.431 hybrid contribution 0.304 0.263 -0.075 0.409 sum -16.685 -10.340 3.974 20.027 Atomic orbital electron populations 1.22706 0.81249 1.02421 0.99982 1.87498 1.19436 1.29118 1.95385 1.22805 0.93808 0.83755 1.00136 1.20819 0.91442 0.97860 0.95665 1.21527 0.99602 0.81036 0.96900 1.46144 1.49999 1.14873 1.24835 1.20330 0.82433 0.86265 0.83351 1.90795 1.36673 1.77061 1.35991 1.21697 1.02336 0.91584 0.84531 1.47328 1.15172 1.32437 1.09129 1.74076 1.06652 1.07848 1.23333 1.24774 1.01599 1.04767 0.89918 1.24748 0.95486 0.99624 1.01282 1.74011 1.24696 1.19998 0.93657 1.21993 0.99079 0.98645 0.95933 1.20948 0.90127 0.88522 0.98786 1.44023 1.44893 1.11182 1.31215 1.19130 1.05552 1.22556 0.91122 0.91738 1.25035 0.96928 1.01917 0.95700 1.70023 1.34787 1.36452 1.13288 0.86380 0.79514 0.80004 0.80923 1.21101 1.21656 1.20916 1.20807 0.87218 0.97829 0.89776 1.22203 1.01011 0.92637 1.00922 0.94254 0.94094 0.89887 0.93361 0.92944 0.92248 0.89479 0.74870 0.84838 0.84684 0.78623 0.78668 0.92571 0.92066 0.92891 0.96233 0.93535 0.89190 0.95915 0.91777 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.40 -4.13 6.73 -35.23 -0.24 -4.37 16 3 C 0.07 0.85 4.80 37.16 0.18 1.03 16 4 C -0.06 -0.86 0.51 -154.47 -0.08 -0.94 16 5 C 0.13 2.16 3.81 -4.05 -0.02 2.14 16 6 N -0.70 -9.59 4.63 -60.30 -0.28 -9.87 16 7 C 0.49 7.44 7.90 -10.98 -0.09 7.35 16 8 O -0.53 -10.73 16.43 5.56 0.09 -10.64 16 9 C 0.12 1.36 7.02 -5.19 -0.04 1.33 16 10 N -0.14 -1.97 3.44 -11.66 -0.04 -2.01 16 11 N -0.28 -4.04 12.05 30.67 0.37 -3.67 16 12 C -0.03 -0.32 12.20 -17.21 -0.21 -0.53 16 13 C -0.03 -0.32 12.20 -17.21 -0.21 -0.53 16 14 N -0.28 -3.94 12.05 30.67 0.37 -3.57 16 15 C -0.12 -1.86 4.59 -26.62 -0.12 -1.98 16 16 C 0.14 2.88 6.04 -3.71 -0.02 2.86 16 17 N -0.59 -14.30 2.99 -172.32 -0.52 -14.81 16 18 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 19 H 0.06 1.71 7.89 -52.48 -0.41 1.30 16 20 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 21 N -0.90 -26.04 11.19 55.49 0.62 -25.42 16 22 Si 0.90 21.54 29.59 -169.99 -5.03 16.52 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.17 3.87 4.84 -3.71 -0.02 3.85 16 27 C -0.13 -2.23 4.91 -26.61 -0.13 -2.36 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.76 4.99 -51.93 -0.26 1.50 16 35 H 0.41 4.70 4.70 -40.82 -0.19 4.51 16 36 H 0.13 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.14 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.20 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.20 1.37 8.06 -52.48 -0.42 0.94 16 40 H 0.06 0.77 6.50 -51.93 -0.34 0.44 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 43 H 0.02 0.42 6.70 -51.93 -0.35 0.07 16 44 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16 46 H 0.02 0.56 6.70 -51.93 -0.35 0.21 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 380.16 15.07 5.73 5.73 Total: -1.00 -35.50 380.16 -6.05 -41.55 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -7.25 Total: 3.97 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 0.13 Total: 6.60 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: 0.52 Total: -59.35 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.15 Total: -15.01 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.50 -6.05 -41.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162288713.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.316 kcal (2) G-P(sol) polarization free energy of solvation -35.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds