Wall clock time and date at job start Tue Mar 31 2020 21:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99801 * 2 1 4 4 C 1.53006 * 109.47062 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.45914 * 300.00334 * 4 3 2 6 6 N 1.46499 * 109.47191 * 60.02709 * 5 4 3 7 7 C 1.34782 * 120.00075 * 179.97438 * 6 5 4 8 8 O 1.21281 * 119.99719 * 359.72307 * 7 6 5 9 9 C 1.50699 * 120.00109 * 179.72185 * 7 6 5 10 10 N 1.46502 * 109.46864 * 180.02562 * 9 7 6 11 11 N 1.28601 * 124.61572 * 269.69693 * 10 9 7 12 12 C 1.31384 * 108.71385 * 179.83437 * 11 10 9 13 13 C 1.39672 * 105.90114 * 0.41633 * 12 11 10 14 14 N 1.28597 * 124.62079 * 90.00367 * 10 9 7 15 15 C 1.53031 * 109.44690 * 59.96820 * 4 3 2 16 16 C 1.53191 * 109.31535 * 181.37706 * 15 4 3 17 17 N 1.46923 * 108.77559 * 305.36871 * 16 15 4 18 18 C 1.36942 * 120.63313 * 233.58486 * 17 16 15 19 19 H 1.08007 * 119.99595 * 27.69217 * 18 17 16 20 20 C 1.38806 * 120.00313 * 207.69970 * 18 17 16 21 21 N 1.31625 * 120.00178 * 17.34763 * 20 18 17 22 22 Si 1.86799 * 120.00144 * 197.35496 * 20 18 17 23 23 H 1.48494 * 109.47014 * 59.99585 * 22 20 18 24 24 H 1.48504 * 109.47194 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46818 * 299.99495 * 22 20 18 26 26 C 1.46926 * 118.74013 * 53.60311 * 17 16 15 27 27 C 1.53037 * 109.45791 * 180.02562 * 4 3 2 28 28 H 1.08998 * 109.47416 * 299.99648 * 1 2 3 29 29 H 1.09000 * 109.47466 * 59.99363 * 1 2 3 30 30 H 1.08999 * 109.47304 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47320 * 60.00373 * 3 2 1 32 32 H 1.08999 * 109.47725 * 300.00561 * 3 2 1 33 33 H 1.09005 * 109.47327 * 300.02404 * 5 4 3 34 34 H 1.08997 * 109.47465 * 180.02562 * 5 4 3 35 35 H 0.96995 * 120.00131 * 359.72074 * 6 5 4 36 36 H 1.08991 * 109.47136 * 300.00139 * 9 7 6 37 37 H 1.08997 * 109.46758 * 59.99961 * 9 7 6 38 38 H 1.08000 * 127.04822 * 180.16395 * 12 11 10 39 39 H 1.08003 * 127.05206 * 179.77010 * 13 12 11 40 40 H 1.08998 * 109.50215 * 301.33380 * 15 4 3 41 41 H 1.09006 * 109.49862 * 61.42840 * 15 4 3 42 42 H 1.09000 * 109.58875 * 185.57970 * 16 15 4 43 43 H 1.09000 * 109.70189 * 65.22129 * 16 15 4 44 44 H 0.97000 * 120.00327 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.58989 * 186.60675 * 26 17 16 46 46 H 1.08999 * 109.70659 * 66.25069 * 26 17 16 47 47 H 1.08999 * 109.49711 * 298.57675 * 27 4 3 48 48 H 1.08999 * 109.50265 * 58.64438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9871 0.4251 1.2483 6 7 3.3916 -0.9134 1.2478 7 6 3.6514 -1.7669 2.2581 8 8 4.3820 -1.4285 3.1650 9 6 3.0338 -3.1416 2.2608 10 7 3.4674 -3.8693 3.4561 11 7 4.5150 -4.6125 3.5190 12 6 4.6082 -5.1079 4.7323 13 6 3.5069 -4.6119 5.4337 14 7 2.8492 -3.8564 4.5836 15 6 3.9858 0.4247 -1.2502 16 6 5.5103 0.2756 -1.2306 17 7 6.1139 1.6070 -1.0837 18 6 7.0595 2.0462 -1.9716 19 1 7.0626 1.6738 -2.9854 20 6 8.0141 2.9698 -1.5685 21 7 8.2371 3.1692 -0.2867 22 14 8.9822 3.9301 -2.8453 23 1 8.0466 4.7232 -3.6824 24 1 9.9312 4.8452 -2.1617 25 1 9.7381 2.9857 -3.7066 26 6 5.6840 2.4582 0.0340 27 6 4.1575 2.5829 0.0000 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8465 -0.8899 33 1 3.6653 0.9656 2.1385 34 1 5.0737 0.3393 1.2483 35 1 2.8075 -1.1841 0.5223 36 1 1.9476 -3.0519 2.2645 37 1 3.3506 -3.6838 1.3699 38 1 5.3763 -5.7672 5.1087 39 1 3.2490 -4.8087 6.4639 40 1 3.5238 -0.5624 -1.2621 41 1 3.6859 0.9779 -2.1403 42 1 5.8453 -0.1766 -2.1641 43 1 5.8071 -0.3546 -0.3922 44 1 8.9039 3.8149 -0.0050 45 1 6.1336 3.4461 -0.0650 46 1 5.9930 2.0092 0.9780 47 1 3.8560 3.1156 -0.9019 48 1 3.8173 3.1321 0.8779 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162288713.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:56 Heat of formation + Delta-G solvation = 37.217954 kcal Electronic energy + Delta-G solvation = -30703.612420 eV Core-core repulsion = 26603.753850 eV Total energy + Delta-G solvation = -4099.858570 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.45717 -41.38986 -39.98388 -38.27839 -36.16326 -34.82629 -34.48654 -33.36483 -32.88823 -31.52783 -29.77338 -28.94908 -27.33289 -26.61335 -25.50534 -23.91327 -23.79186 -23.06074 -22.55045 -21.49917 -20.03790 -19.05040 -18.51821 -18.10472 -17.22040 -17.16406 -16.91469 -16.68585 -16.66430 -16.29616 -16.18396 -15.70242 -15.42807 -15.29372 -15.17135 -15.01810 -14.74697 -14.39275 -14.13891 -13.75281 -13.52798 -13.25763 -13.02835 -12.92519 -12.68172 -12.55220 -12.54434 -12.44598 -12.13549 -12.00552 -11.86360 -11.77671 -11.52130 -11.42439 -11.30904 -11.18303 -11.11263 -10.53769 -10.51328 -10.22810 -10.04327 -8.66866 -7.87093 -5.32362 0.76882 1.28881 1.45620 1.46363 1.48217 1.55409 1.64031 2.18380 2.51273 2.80491 3.27371 3.33350 3.62213 3.65015 3.72721 3.94108 3.96146 3.99402 4.04459 4.19000 4.27320 4.46271 4.50592 4.57260 4.59641 4.60575 4.68629 4.71928 4.72231 4.78249 4.90634 4.98859 5.00493 5.09366 5.15303 5.22643 5.26335 5.36701 5.38064 5.43437 5.50398 5.64092 5.68501 5.77351 6.23577 6.38732 6.57254 7.14869 7.21982 7.39126 7.86872 8.38250 9.18883 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012747 B = 0.003199 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.121355 B = 8750.200817 C =10276.491199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.404 6.404 3 C 0.083 3.917 4 C -0.049 4.049 5 C 0.143 3.857 6 N -0.684 5.684 7 C 0.491 3.509 8 O -0.589 6.589 9 C 0.125 3.875 10 N -0.156 5.156 11 N -0.316 5.316 12 C -0.028 4.028 13 C -0.026 4.026 14 N -0.310 5.310 15 C -0.102 4.102 16 C 0.140 3.860 17 N -0.608 5.608 18 C -0.262 4.262 19 H 0.068 0.932 20 C -0.052 4.052 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.275 1.275 24 H -0.297 1.297 25 H -0.277 1.277 26 C 0.178 3.822 27 C -0.116 4.116 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.105 0.895 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.039 0.961 35 H 0.423 0.577 36 H 0.171 0.829 37 H 0.163 0.837 38 H 0.230 0.770 39 H 0.233 0.767 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.002 0.998 44 H 0.249 0.751 45 H 0.054 0.946 46 H -0.010 1.010 47 H 0.070 0.930 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.309 -12.829 3.559 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.323 6.323 3 C 0.006 3.994 4 C -0.050 4.050 5 C 0.019 3.981 6 N -0.342 5.342 7 C 0.276 3.724 8 O -0.470 6.470 9 C 0.002 3.998 10 N -0.056 5.056 11 N -0.157 5.157 12 C -0.211 4.211 13 C -0.209 4.209 14 N -0.151 5.151 15 C -0.141 4.141 16 C 0.015 3.985 17 N -0.331 5.331 18 C -0.392 4.392 19 H 0.086 0.914 20 C -0.248 4.248 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.201 1.201 24 H -0.223 1.223 25 H -0.203 1.203 26 C 0.052 3.948 27 C -0.156 4.156 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.123 0.877 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.268 0.732 36 H 0.188 0.812 37 H 0.181 0.819 38 H 0.246 0.754 39 H 0.249 0.751 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.020 0.980 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.008 0.992 47 H 0.089 0.911 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.020 -11.963 3.050 23.520 hybrid contribution 1.249 0.569 0.300 1.405 sum -18.771 -11.393 3.350 22.212 Atomic orbital electron populations 1.22924 0.79144 1.04144 1.00544 1.87425 1.21456 1.27945 1.95522 1.22517 0.90739 0.84849 1.01285 1.20661 0.94240 0.95704 0.94382 1.21185 0.96920 0.82621 0.97394 1.45976 1.49480 1.13726 1.25016 1.21106 0.81367 0.87685 0.82276 1.90766 1.39408 1.78505 1.38281 1.21946 1.04030 0.88774 0.85086 1.47561 1.15329 1.33020 1.09724 1.74033 1.07516 1.09025 1.25090 1.25457 1.02178 1.04358 0.89120 1.25458 0.94774 0.98181 1.02465 1.73970 1.25760 1.21057 0.94293 1.21827 0.95301 1.00501 0.96458 1.21068 0.93216 0.86449 0.97804 1.44302 1.44941 1.12935 1.30941 1.19505 1.05750 1.22232 0.91749 0.91420 1.25813 0.98352 1.03217 0.97379 1.70207 1.35671 1.37201 1.15226 0.85339 0.78072 0.78481 0.78536 1.20056 1.22330 1.20284 1.20556 0.90921 0.95285 0.88034 1.21971 0.96687 0.94850 1.02062 0.93965 0.93251 0.87671 0.92581 0.91501 0.93075 0.94223 0.73187 0.81168 0.81931 0.75377 0.75058 0.89664 0.91530 0.93082 0.98041 0.94239 0.92776 0.99199 0.91119 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.40 -6.88 6.73 -148.98 -1.00 -7.88 16 3 C 0.08 1.71 4.80 71.98 0.35 2.05 16 4 C -0.05 -1.42 0.51 -52.16 -0.03 -1.44 16 5 C 0.14 4.74 3.81 86.38 0.33 5.07 16 6 N -0.68 -18.06 4.63 -463.07 -2.14 -20.21 16 7 C 0.49 14.65 7.90 87.66 0.69 15.34 16 8 O -0.59 -24.75 16.43 -3.03 -0.05 -24.80 16 9 C 0.12 2.55 7.02 85.63 0.60 3.15 16 10 N -0.16 -4.23 3.44 -190.81 -0.66 -4.88 16 11 N -0.32 -8.93 12.05 -56.86 -0.69 -9.62 16 12 C -0.03 -0.61 12.20 85.11 1.04 0.43 16 13 C -0.03 -0.53 12.20 85.11 1.04 0.51 16 14 N -0.31 -8.25 12.05 -56.87 -0.69 -8.94 16 15 C -0.10 -3.07 4.59 30.67 0.14 -2.93 16 16 C 0.14 5.75 6.04 86.36 0.52 6.27 16 17 N -0.61 -30.44 2.99 -699.10 -2.09 -32.53 16 18 C -0.26 -14.48 9.58 84.03 0.81 -13.68 16 19 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 20 C -0.05 -2.97 4.91 84.86 0.42 -2.55 16 21 N -0.94 -56.81 11.19 21.65 0.24 -56.56 16 22 Si 0.97 45.30 29.59 68.60 2.03 47.32 16 23 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 26 C 0.18 8.55 4.84 86.36 0.42 8.97 16 27 C -0.12 -4.03 4.91 30.67 0.15 -3.88 16 28 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.04 1.71 4.99 -2.39 -0.01 1.70 16 35 H 0.42 8.60 4.70 -92.71 -0.44 8.16 16 36 H 0.17 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.16 2.32 8.14 -2.39 -0.02 2.31 16 38 H 0.23 2.91 8.06 -2.91 -0.02 2.89 16 39 H 0.23 2.59 8.06 -2.91 -0.02 2.57 16 40 H 0.08 2.09 6.50 -2.39 -0.02 2.07 16 41 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 42 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 43 H 0.00 0.08 6.70 -2.39 -0.02 0.06 16 44 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 45 H 0.05 2.97 6.04 -2.39 -0.01 2.95 16 46 H -0.01 -0.54 6.70 -2.39 -0.02 -0.55 16 47 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 48 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -83.32 380.16 3.21 -80.10 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.54 Total: 19.13 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 7.72 Total: 18.87 kcal Atomic # 7 Polarization: -126.72 SS G_CDS: -6.02 Total: -132.74 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -1.05 Total: -32.69 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -83.32 3.21 -80.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162288713.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.322 kcal (2) G-P(sol) polarization free energy of solvation -83.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds