Wall clock time and date at job start Tue Mar 31 2020 21:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00445 * 2 1 4 4 C 1.52996 * 109.47272 * 179.97438 * 3 2 1 5 5 C 1.52991 * 109.46071 * 299.96998 * 4 3 2 6 6 N 1.46500 * 109.47310 * 60.02787 * 5 4 3 7 7 C 1.34777 * 120.00492 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99744 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00584 * 180.02562 * 7 6 5 10 10 C 1.50695 * 109.47264 * 179.97438 * 9 7 6 11 11 N 1.33241 * 125.52358 * 90.00291 * 10 9 7 12 12 C 1.30833 * 109.82828 * 179.97438 * 11 10 9 13 13 N 1.34422 * 108.07683 * 359.97438 * 12 11 10 14 14 H 0.97006 * 126.82275 * 179.97438 * 13 12 11 15 15 N 1.30711 * 125.52999 * 269.69056 * 10 9 7 16 16 C 1.53042 * 109.45987 * 179.97438 * 4 3 2 17 17 C 1.53196 * 109.31301 * 178.62714 * 16 4 3 18 18 N 1.46919 * 108.77357 * 54.63738 * 17 16 4 19 19 C 1.36935 * 120.62952 * 126.36714 * 18 17 16 20 20 H 1.07992 * 120.00276 * 332.45452 * 19 18 17 21 21 C 1.38815 * 120.00026 * 152.17450 * 19 18 17 22 22 N 1.31620 * 119.99785 * 343.17001 * 21 19 18 23 23 Si 1.86799 * 120.00242 * 163.17219 * 21 19 18 24 24 H 1.48499 * 109.47051 * 59.99668 * 23 21 19 25 25 H 1.48497 * 109.47273 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46803 * 299.99780 * 23 21 19 27 27 C 1.46930 * 118.74055 * 306.64082 * 18 17 16 28 28 C 1.52762 * 109.00426 * 53.31040 * 27 18 17 29 29 H 1.09005 * 109.47368 * 300.00942 * 1 2 3 30 30 H 1.09007 * 109.46981 * 60.00195 * 1 2 3 31 31 H 1.08996 * 109.47609 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47051 * 59.99220 * 3 2 1 33 33 H 1.09008 * 109.46718 * 299.99574 * 3 2 1 34 34 H 1.09006 * 109.47543 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.47293 * 300.02529 * 5 4 3 36 36 H 0.96998 * 119.99663 * 359.97438 * 6 5 4 37 37 H 1.08993 * 109.46689 * 300.00220 * 9 7 6 38 38 H 1.09001 * 109.47144 * 59.99273 * 9 7 6 39 39 H 1.07999 * 125.95893 * 179.97438 * 12 11 10 40 40 H 1.09005 * 109.49382 * 58.67827 * 16 4 3 41 41 H 1.08991 * 109.52573 * 298.59920 * 16 4 3 42 42 H 1.09000 * 109.58299 * 294.85003 * 17 16 4 43 43 H 1.08994 * 109.70288 * 174.49711 * 17 16 4 44 44 H 0.97003 * 120.00199 * 179.97438 * 22 21 19 45 45 H 1.08999 * 109.58738 * 173.14187 * 27 18 17 46 46 H 1.08996 * 109.58558 * 293.57263 * 27 18 17 47 47 H 1.09005 * 109.56252 * 185.54994 * 28 27 18 48 48 H 1.08999 * 109.38709 * 65.51901 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9861 0.4261 1.2506 6 7 3.3906 -0.9124 1.2509 7 6 3.6487 -1.7646 2.2627 8 8 4.3743 -1.4235 3.1727 9 6 3.0366 -3.1417 2.2628 10 6 3.4804 -3.8886 3.4940 11 7 2.8496 -3.8906 4.6677 12 6 3.5006 -4.6400 5.5200 13 7 4.5801 -5.1411 4.8953 14 1 5.2501 -5.7310 5.2751 15 7 4.5434 -4.6441 3.5822 16 6 4.1577 2.5827 0.0000 17 6 5.6842 2.4579 0.0353 18 7 6.1149 1.6053 -1.0810 19 6 7.0604 2.0436 -1.9692 20 1 7.1785 3.1010 -2.1543 21 6 7.8713 1.1291 -2.6274 22 7 7.9743 -0.1031 -2.1762 23 14 8.8162 1.6472 -4.1532 24 1 9.7363 2.7614 -3.8110 25 1 9.6015 0.4950 -4.6641 26 1 7.8612 2.0968 -5.1978 27 6 5.5073 0.2759 -1.2298 28 6 3.9868 0.4229 -1.2477 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.6886 1.8463 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 5.0728 0.3402 1.2515 35 1 3.6637 0.9675 2.1400 36 1 2.8100 -1.1850 0.5233 37 1 1.9500 -3.0562 2.2611 38 1 3.3597 -3.6830 1.3736 39 1 3.2196 -4.8238 6.5465 40 1 3.8173 3.1328 0.8773 41 1 3.8570 3.1149 -0.9023 42 1 5.9922 2.0077 0.9790 43 1 6.1360 3.4449 -0.0633 44 1 8.5406 -0.7423 -2.6363 45 1 5.8403 -0.1756 -2.1644 46 1 5.8007 -0.3559 -0.3915 47 1 3.5248 -0.5643 -1.2585 48 1 3.6871 0.9746 -2.1387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162576665.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:46 Heat of formation + Delta-G solvation = 32.250940 kcal Electronic energy + Delta-G solvation = -30646.175930 eV Core-core repulsion = 26546.101974 eV Total energy + Delta-G solvation = -4100.073956 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.14984 -39.91246 -38.47559 -37.06472 -34.44287 -33.31829 -32.93605 -31.72373 -30.88561 -29.92812 -29.17344 -27.62716 -26.10178 -25.37321 -23.81000 -22.89714 -22.25139 -21.11287 -20.82524 -19.75001 -18.54058 -18.20859 -17.11815 -16.42649 -16.08098 -15.79785 -15.71406 -15.38933 -15.25154 -15.04797 -14.67192 -14.45952 -13.78465 -13.68967 -13.50409 -13.28901 -13.22794 -12.79200 -12.71739 -12.28466 -12.18489 -12.00768 -11.84576 -11.52109 -11.38366 -11.20798 -10.87322 -10.68589 -10.49864 -10.23250 -10.22879 -10.13164 -10.11105 -9.89670 -9.82409 -9.69635 -9.48554 -9.36415 -9.34878 -8.50542 -8.37162 -6.60175 -5.72863 -3.15414 1.55549 2.57543 2.76955 3.03086 3.41460 3.47364 3.48121 3.51498 3.88626 4.09967 4.53820 4.57365 4.82501 5.00749 5.07800 5.17533 5.29429 5.33432 5.39071 5.42448 5.47343 5.49287 5.56168 5.59022 5.62982 5.71949 5.77004 6.07668 6.10399 6.14050 6.27864 6.32070 6.43213 6.45035 6.65140 6.68808 6.76123 6.86917 6.93260 6.94483 7.03588 7.15945 7.44113 7.74717 7.84427 8.00808 8.03818 8.50416 8.68098 9.26897 9.90389 10.47128 11.35273 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011180 B = 0.003406 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.764554 B = 8219.017572 C = 9862.031192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.073 3.927 4 C -0.059 4.059 5 C 0.134 3.866 6 N -0.706 5.706 7 C 0.517 3.483 8 O -0.543 6.543 9 C -0.050 4.050 10 C 0.253 3.747 11 N -0.536 5.536 12 C 0.258 3.742 13 N -0.485 5.485 14 H 0.441 0.559 15 N -0.300 5.300 16 C -0.119 4.119 17 C 0.143 3.857 18 N -0.591 5.591 19 C -0.254 4.254 20 H 0.064 0.936 21 C 0.003 3.997 22 N -0.900 5.900 23 Si 0.901 3.099 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.170 3.830 28 C -0.125 4.125 29 H 0.038 0.962 30 H 0.039 0.961 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.409 0.591 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.221 0.779 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.022 0.978 43 H 0.055 0.945 44 H 0.254 0.746 45 H 0.086 0.914 46 H 0.022 0.978 47 H 0.055 0.945 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.287 -6.665 10.415 20.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.004 4.004 4 C -0.060 4.060 5 C 0.010 3.990 6 N -0.362 5.362 7 C 0.300 3.700 8 O -0.421 6.421 9 C -0.092 4.092 10 C -0.030 4.030 11 N -0.264 5.264 12 C -0.041 4.041 13 N -0.203 5.203 14 H 0.286 0.714 15 N -0.129 5.129 16 C -0.159 4.159 17 C 0.017 3.983 18 N -0.314 5.314 19 C -0.383 4.383 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.544 5.544 23 Si 0.731 3.269 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.211 1.211 27 C 0.044 3.956 28 C -0.164 4.164 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.250 0.750 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.237 0.763 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.040 0.960 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.104 0.896 46 H 0.040 0.960 47 H 0.074 0.926 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.386 -6.627 10.420 19.728 hybrid contribution 0.396 -0.100 -0.524 0.664 sum -14.989 -6.727 9.896 19.180 Atomic orbital electron populations 1.22701 0.81387 1.02468 0.99756 1.87554 1.19292 1.28803 1.95320 1.22757 0.93892 0.83934 0.99793 1.20804 0.91440 0.97240 0.96490 1.21426 0.99444 0.81806 0.96278 1.46128 1.50357 1.14720 1.25042 1.20032 0.81444 0.85970 0.82512 1.90709 1.37525 1.77628 1.36243 1.19891 1.02949 0.93087 0.93289 1.23347 0.89920 0.95402 0.94326 1.70338 1.32561 1.22470 1.01013 1.26018 0.85451 0.92594 1.00068 1.48082 1.22930 1.40042 1.09262 0.71418 1.78049 1.21022 1.17701 0.96155 1.21982 0.99303 0.93592 1.00997 1.20925 0.90606 0.95403 0.91410 1.44024 1.44622 1.14919 1.27803 1.19128 1.10410 0.92230 1.16572 0.91787 1.25039 0.97547 0.96647 1.00346 1.70035 1.40748 1.04414 1.39223 0.86391 0.79576 0.77364 0.83534 1.20972 1.21698 1.21125 1.20721 0.86410 0.86735 1.01694 1.22107 1.00852 0.98453 0.95024 0.94360 0.94244 0.89828 0.93601 0.93154 0.89872 0.92716 0.74959 0.86335 0.86544 0.76278 0.92737 0.91583 0.96037 0.92626 0.93629 0.89611 0.96031 0.92613 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.39 -4.69 6.73 -35.23 -0.24 -4.93 16 3 C 0.07 0.93 4.80 37.16 0.18 1.11 16 4 C -0.06 -0.94 0.51 -154.47 -0.08 -1.02 16 5 C 0.13 2.31 3.80 -4.05 -0.02 2.30 16 6 N -0.71 -11.09 4.63 -60.30 -0.28 -11.37 16 7 C 0.52 8.75 7.82 -10.99 -0.09 8.66 16 8 O -0.54 -11.58 16.03 5.56 0.09 -11.49 16 9 C -0.05 -0.65 6.33 -29.04 -0.18 -0.84 16 10 C 0.25 3.79 6.63 -156.86 -1.04 2.75 16 11 N -0.54 -7.40 11.19 -11.98 -0.13 -7.53 16 12 C 0.26 2.47 13.13 -90.66 -1.19 1.28 16 13 N -0.49 -4.97 7.45 29.53 0.22 -4.75 16 14 H 0.44 2.70 8.96 -182.33 -1.63 1.07 16 15 N -0.30 -4.52 12.80 32.42 0.41 -4.10 16 16 C -0.12 -1.95 4.91 -26.61 -0.13 -2.08 16 17 C 0.14 2.96 6.05 -3.71 -0.02 2.93 16 18 N -0.59 -14.64 3.00 -172.59 -0.52 -15.15 16 19 C -0.25 -6.95 9.58 -15.06 -0.14 -7.09 16 20 H 0.06 1.72 7.88 -52.49 -0.41 1.30 16 21 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 22 N -0.90 -26.43 11.18 55.49 0.62 -25.81 16 23 Si 0.90 21.83 29.59 -169.99 -5.03 16.80 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.17 4.01 4.81 -3.93 -0.02 3.99 16 28 C -0.13 -2.29 4.57 -26.83 -0.12 -2.41 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 34 H 0.08 1.75 4.99 -51.93 -0.26 1.50 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.41 5.73 4.70 -40.82 -0.19 5.54 16 37 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.22 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.02 0.47 6.69 -51.93 -0.35 0.12 16 43 H 0.06 1.13 7.93 -51.93 -0.41 0.71 16 44 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.09 2.29 6.05 -51.93 -0.31 1.98 16 46 H 0.02 0.55 6.70 -51.93 -0.35 0.21 16 47 H 0.06 0.95 6.49 -51.93 -0.34 0.61 16 48 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 379.13 15.07 5.71 5.71 Total: -1.00 -37.21 379.13 -9.43 -46.65 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -8.47 Total: 4.98 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: -1.83 Total: 10.99 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: 0.32 Total: -68.71 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.15 Total: -16.42 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.21 -9.43 -46.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162576665.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.897 kcal (2) G-P(sol) polarization free energy of solvation -37.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds