Wall clock time and date at job start Tue Mar 31 2020 21:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00445 * 2 1 4 4 C 1.52996 * 109.47272 * 179.97438 * 3 2 1 5 5 C 1.52991 * 109.46071 * 299.96998 * 4 3 2 6 6 N 1.46500 * 109.47310 * 60.02787 * 5 4 3 7 7 C 1.34777 * 120.00492 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99744 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00584 * 180.02562 * 7 6 5 10 10 C 1.50695 * 109.47264 * 179.97438 * 9 7 6 11 11 N 1.33241 * 125.52358 * 90.00291 * 10 9 7 12 12 C 1.30833 * 109.82828 * 179.97438 * 11 10 9 13 13 N 1.34422 * 108.07683 * 359.97438 * 12 11 10 14 14 H 0.97006 * 126.82275 * 179.97438 * 13 12 11 15 15 N 1.30711 * 125.52999 * 269.69056 * 10 9 7 16 16 C 1.53042 * 109.45987 * 179.97438 * 4 3 2 17 17 C 1.53196 * 109.31301 * 178.62714 * 16 4 3 18 18 N 1.46919 * 108.77357 * 54.63738 * 17 16 4 19 19 C 1.36935 * 120.62952 * 126.36714 * 18 17 16 20 20 H 1.07992 * 120.00276 * 332.45452 * 19 18 17 21 21 C 1.38815 * 120.00026 * 152.17450 * 19 18 17 22 22 N 1.31620 * 119.99785 * 343.17001 * 21 19 18 23 23 Si 1.86799 * 120.00242 * 163.17219 * 21 19 18 24 24 H 1.48499 * 109.47051 * 59.99668 * 23 21 19 25 25 H 1.48497 * 109.47273 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46803 * 299.99780 * 23 21 19 27 27 C 1.46930 * 118.74055 * 306.64082 * 18 17 16 28 28 C 1.52762 * 109.00426 * 53.31040 * 27 18 17 29 29 H 1.09005 * 109.47368 * 300.00942 * 1 2 3 30 30 H 1.09007 * 109.46981 * 60.00195 * 1 2 3 31 31 H 1.08996 * 109.47609 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47051 * 59.99220 * 3 2 1 33 33 H 1.09008 * 109.46718 * 299.99574 * 3 2 1 34 34 H 1.09006 * 109.47543 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.47293 * 300.02529 * 5 4 3 36 36 H 0.96998 * 119.99663 * 359.97438 * 6 5 4 37 37 H 1.08993 * 109.46689 * 300.00220 * 9 7 6 38 38 H 1.09001 * 109.47144 * 59.99273 * 9 7 6 39 39 H 1.07999 * 125.95893 * 179.97438 * 12 11 10 40 40 H 1.09005 * 109.49382 * 58.67827 * 16 4 3 41 41 H 1.08991 * 109.52573 * 298.59920 * 16 4 3 42 42 H 1.09000 * 109.58299 * 294.85003 * 17 16 4 43 43 H 1.08994 * 109.70288 * 174.49711 * 17 16 4 44 44 H 0.97003 * 120.00199 * 179.97438 * 22 21 19 45 45 H 1.08999 * 109.58738 * 173.14187 * 27 18 17 46 46 H 1.08996 * 109.58558 * 293.57263 * 27 18 17 47 47 H 1.09005 * 109.56252 * 185.54994 * 28 27 18 48 48 H 1.08999 * 109.38709 * 65.51901 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9861 0.4261 1.2506 6 7 3.3906 -0.9124 1.2509 7 6 3.6487 -1.7646 2.2627 8 8 4.3743 -1.4235 3.1727 9 6 3.0366 -3.1417 2.2628 10 6 3.4804 -3.8886 3.4940 11 7 2.8496 -3.8906 4.6677 12 6 3.5006 -4.6400 5.5200 13 7 4.5801 -5.1411 4.8953 14 1 5.2501 -5.7310 5.2751 15 7 4.5434 -4.6441 3.5822 16 6 4.1577 2.5827 0.0000 17 6 5.6842 2.4579 0.0353 18 7 6.1149 1.6053 -1.0810 19 6 7.0604 2.0436 -1.9692 20 1 7.1785 3.1010 -2.1543 21 6 7.8713 1.1291 -2.6274 22 7 7.9743 -0.1031 -2.1762 23 14 8.8162 1.6472 -4.1532 24 1 9.7363 2.7614 -3.8110 25 1 9.6015 0.4950 -4.6641 26 1 7.8612 2.0968 -5.1978 27 6 5.5073 0.2759 -1.2298 28 6 3.9868 0.4229 -1.2477 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.6886 1.8463 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 5.0728 0.3402 1.2515 35 1 3.6637 0.9675 2.1400 36 1 2.8100 -1.1850 0.5233 37 1 1.9500 -3.0562 2.2611 38 1 3.3597 -3.6830 1.3736 39 1 3.2196 -4.8238 6.5465 40 1 3.8173 3.1328 0.8773 41 1 3.8570 3.1149 -0.9023 42 1 5.9922 2.0077 0.9790 43 1 6.1360 3.4449 -0.0633 44 1 8.5406 -0.7423 -2.6363 45 1 5.8403 -0.1756 -2.1644 46 1 5.8007 -0.3559 -0.3915 47 1 3.5248 -0.5643 -1.2585 48 1 3.6871 0.9746 -2.1387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162576665.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:44 Heat of formation + Delta-G solvation = 5.144394 kcal Electronic energy + Delta-G solvation = -30647.351358 eV Core-core repulsion = 26546.101974 eV Total energy + Delta-G solvation = -4101.249384 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.05520 -41.26080 -39.82900 -38.23298 -36.05453 -34.59312 -34.23956 -32.78983 -32.56202 -31.61176 -30.25780 -28.92073 -27.32794 -26.59337 -25.44650 -23.89972 -23.72359 -22.50655 -22.20790 -20.96989 -19.87058 -19.25118 -18.69808 -17.89775 -17.05827 -17.01358 -16.88758 -16.78379 -16.40395 -16.18229 -16.04312 -15.66686 -15.29620 -15.27666 -14.97850 -14.72285 -14.40332 -14.30317 -13.97776 -13.66004 -13.38558 -13.13837 -13.04052 -13.02618 -12.85928 -12.58251 -12.52552 -12.28458 -12.23809 -11.98777 -11.80577 -11.43275 -11.24562 -11.16244 -11.08221 -11.06842 -10.93218 -10.58905 -10.51258 -10.42836 -9.87482 -8.63534 -7.84270 -5.29962 0.67450 1.46908 1.49157 1.56191 1.71355 1.75308 1.87920 2.42230 2.52968 2.93319 3.19766 3.30076 3.69647 3.70068 3.77373 3.89219 4.02629 4.07561 4.21705 4.31964 4.46154 4.50968 4.53937 4.58448 4.59830 4.67493 4.73045 4.75399 4.77355 4.88157 4.94589 5.01990 5.06263 5.19882 5.26055 5.27886 5.31334 5.35219 5.39762 5.51870 5.64618 5.68467 5.82811 6.28662 6.32032 6.41172 6.76843 7.11045 7.17606 7.40910 7.89849 8.41402 9.21469 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011180 B = 0.003406 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.764554 B = 8219.017572 C = 9862.031192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.407 6.407 3 C 0.082 3.918 4 C -0.052 4.052 5 C 0.142 3.858 6 N -0.694 5.694 7 C 0.512 3.488 8 O -0.594 6.594 9 C -0.044 4.044 10 C 0.236 3.764 11 N -0.571 5.571 12 C 0.274 3.726 13 N -0.477 5.477 14 H 0.457 0.543 15 N -0.347 5.347 16 C -0.108 4.108 17 C 0.138 3.862 18 N -0.609 5.609 19 C -0.262 4.262 20 H 0.069 0.931 21 C -0.053 4.053 22 N -0.936 5.936 23 Si 0.968 3.032 24 H -0.277 1.277 25 H -0.297 1.297 26 H -0.275 1.275 27 C 0.182 3.818 28 C -0.109 4.109 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.059 0.941 36 H 0.419 0.581 37 H 0.150 0.850 38 H 0.131 0.869 39 H 0.276 0.724 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.005 0.995 43 H 0.056 0.944 44 H 0.248 0.752 45 H 0.048 0.952 46 H -0.013 1.013 47 H 0.069 0.931 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.138 -6.192 10.815 22.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.327 6.327 3 C 0.006 3.994 4 C -0.052 4.052 5 C 0.018 3.982 6 N -0.351 5.351 7 C 0.298 3.702 8 O -0.475 6.475 9 C -0.086 4.086 10 C -0.048 4.048 11 N -0.300 5.300 12 C -0.024 4.024 13 N -0.196 5.196 14 H 0.305 0.695 15 N -0.177 5.177 16 C -0.147 4.147 17 C 0.012 3.988 18 N -0.332 5.332 19 C -0.392 4.392 20 H 0.086 0.914 21 C -0.248 4.248 22 N -0.582 5.582 23 Si 0.796 3.204 24 H -0.203 1.203 25 H -0.223 1.223 26 H -0.201 1.201 27 C 0.057 3.943 28 C -0.148 4.148 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.263 0.737 37 H 0.168 0.832 38 H 0.149 0.851 39 H 0.291 0.709 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.023 0.977 43 H 0.075 0.925 44 H 0.057 0.943 45 H 0.066 0.934 46 H 0.005 0.995 47 H 0.087 0.913 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.271 -6.152 10.817 22.107 hybrid contribution 1.314 -0.286 -0.506 1.437 sum -16.957 -6.438 10.312 20.864 Atomic orbital electron populations 1.22906 0.79265 1.03948 1.00567 1.87490 1.21415 1.28242 1.95507 1.22540 0.90785 0.84763 1.01329 1.20696 0.94370 0.96131 0.94032 1.21195 0.96745 0.82950 0.97298 1.46063 1.49887 1.14108 1.25075 1.20710 0.80578 0.87215 0.81686 1.90675 1.39806 1.78821 1.38210 1.19950 1.04454 0.90472 0.93717 1.23610 0.90194 0.95703 0.95259 1.70320 1.33976 1.24404 1.01309 1.27063 0.83909 0.90136 1.01299 1.48009 1.23675 1.39990 1.07974 0.69472 1.77924 1.21840 1.19002 0.98957 1.21840 0.95489 0.94441 1.02956 1.21075 0.94009 0.94354 0.89326 1.44301 1.44635 1.15546 1.28747 1.19517 1.10458 0.92524 1.16747 0.91366 1.25826 0.99005 0.96722 1.03267 1.70224 1.41937 1.05538 1.40538 0.85338 0.78297 0.76717 0.80061 1.20258 1.22328 1.20100 1.20437 0.89963 0.85775 0.98168 1.21860 0.96516 0.99841 0.96583 0.93576 0.93341 0.88154 0.91896 0.91740 0.94596 0.92300 0.73740 0.83223 0.85085 0.70880 0.89443 0.90716 0.97670 0.92523 0.94348 0.93382 0.99472 0.91259 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -8.47 6.73 -148.98 -1.00 -9.48 16 3 C 0.08 1.83 4.80 71.98 0.35 2.17 16 4 C -0.05 -1.57 0.51 -52.16 -0.03 -1.59 16 5 C 0.14 4.95 3.80 86.38 0.33 5.28 16 6 N -0.69 -21.67 4.63 -463.07 -2.14 -23.82 16 7 C 0.51 17.54 7.82 87.66 0.69 18.23 16 8 O -0.59 -26.21 16.03 -3.03 -0.05 -26.26 16 9 C -0.04 -1.14 6.33 29.10 0.18 -0.95 16 10 C 0.24 7.00 6.63 138.63 0.92 7.92 16 11 N -0.57 -15.10 11.19 -191.81 -2.15 -17.25 16 12 C 0.27 4.68 13.13 180.36 2.37 7.05 16 13 N -0.48 -9.26 7.45 -60.49 -0.45 -9.71 16 14 H 0.46 5.06 8.96 -213.09 -1.91 3.15 16 15 N -0.35 -10.50 12.80 -51.34 -0.66 -11.16 16 16 C -0.11 -3.35 4.91 30.67 0.15 -3.20 16 17 C 0.14 5.78 6.05 86.37 0.52 6.30 16 18 N -0.61 -31.11 3.00 -699.95 -2.10 -33.21 16 19 C -0.26 -14.69 9.58 84.03 0.81 -13.88 16 20 H 0.07 3.68 7.88 -2.91 -0.02 3.66 16 21 C -0.05 -3.04 4.92 84.86 0.42 -2.62 16 22 N -0.94 -57.56 11.18 21.65 0.24 -57.31 16 23 Si 0.97 45.85 29.59 68.60 2.03 47.88 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 27 C 0.18 8.98 4.81 86.22 0.41 9.39 16 28 C -0.11 -3.96 4.57 30.53 0.14 -3.82 16 29 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.04 1.60 4.99 -2.38 -0.01 1.59 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.42 11.22 4.70 -92.71 -0.44 10.78 16 37 H 0.15 2.80 8.14 -2.39 -0.02 2.79 16 38 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 39 H 0.28 1.04 8.06 -2.91 -0.02 1.01 16 40 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 41 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.01 0.24 6.69 -2.39 -0.02 0.23 16 43 H 0.06 2.31 7.93 -2.39 -0.02 2.29 16 44 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 45 H 0.05 2.71 6.05 -2.39 -0.01 2.69 16 46 H -0.01 -0.70 6.70 -2.39 -0.02 -0.72 16 47 H 0.07 2.31 6.49 -2.38 -0.02 2.29 16 48 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -86.72 379.13 0.88 -85.84 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -1.35 Total: 22.53 kcal Atomic # 6 Polarization: 23.42 SS G_CDS: 8.50 Total: 31.92 kcal Atomic # 7 Polarization: -145.20 SS G_CDS: -7.25 Total: -152.45 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -1.05 Total: -35.73 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -86.72 0.88 -85.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162576665.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.986 kcal (2) G-P(sol) polarization free energy of solvation -86.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds