Wall clock time and date at job start Tue Mar 31 2020 21:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42907 * 113.99391 * 2 1 4 4 C 1.53000 * 109.46669 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.46278 * 299.97318 * 4 3 2 6 6 N 1.46500 * 109.47445 * 60.02843 * 5 4 3 7 7 C 1.34769 * 120.00686 * 180.02562 * 6 5 4 8 8 O 1.21291 * 119.99891 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00489 * 179.97438 * 7 6 5 10 10 N 1.46502 * 109.47473 * 179.97438 * 9 7 6 11 11 C 1.34433 * 126.82080 * 125.00044 * 10 9 7 12 12 N 1.30828 * 108.07484 * 179.97438 * 11 10 9 13 13 C 1.33251 * 109.83052 * 0.02562 * 12 11 10 14 14 N 1.30709 * 108.94125 * 359.75202 * 13 12 11 15 15 C 1.53043 * 109.45946 * 180.02562 * 4 3 2 16 16 C 1.53188 * 109.31445 * 178.61633 * 15 4 3 17 17 N 1.46925 * 108.77701 * 54.63452 * 16 15 4 18 18 C 1.36933 * 120.63218 * 126.36931 * 17 16 15 19 19 H 1.07998 * 120.00198 * 332.45537 * 18 17 16 20 20 C 1.38819 * 119.99952 * 152.17898 * 18 17 16 21 21 N 1.31617 * 120.00072 * 343.15781 * 20 18 17 22 22 Si 1.86804 * 119.99834 * 163.15974 * 20 18 17 23 23 H 1.48501 * 109.47135 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.46995 * 120.00274 * 22 20 18 25 25 H 1.48504 * 109.46877 * 240.00049 * 22 20 18 26 26 C 1.46933 * 118.73707 * 306.64093 * 17 16 15 27 27 C 1.52758 * 109.00408 * 53.31408 * 26 17 16 28 28 H 1.08995 * 109.47196 * 59.99882 * 1 2 3 29 29 H 1.09006 * 109.46657 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46911 * 299.99495 * 1 2 3 31 31 H 1.08997 * 109.47211 * 60.00685 * 3 2 1 32 32 H 1.08997 * 109.47395 * 299.99600 * 3 2 1 33 33 H 1.09000 * 109.47493 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.47507 * 300.02902 * 5 4 3 35 35 H 0.97005 * 119.99731 * 0.02562 * 6 5 4 36 36 H 1.09000 * 109.47302 * 300.00602 * 9 7 6 37 37 H 1.09003 * 109.47106 * 60.00284 * 9 7 6 38 38 H 1.07991 * 125.96308 * 0.02562 * 11 10 9 39 39 H 1.07995 * 125.52798 * 179.97438 * 13 12 11 40 40 H 1.08999 * 109.49781 * 58.66074 * 15 4 3 41 41 H 1.09004 * 109.51980 * 298.58284 * 15 4 3 42 42 H 1.09000 * 109.58790 * 294.84843 * 16 15 4 43 43 H 1.09003 * 109.70840 * 174.49438 * 16 15 4 44 44 H 0.97002 * 120.00067 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.58175 * 173.14238 * 26 17 16 46 46 H 1.08993 * 109.58871 * 293.56927 * 26 17 16 47 47 H 1.09006 * 109.56332 * 185.55045 * 27 26 17 48 48 H 1.08994 * 109.39241 * 65.51309 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 3.9872 0.4259 1.2486 6 7 3.3918 -0.9127 1.2489 7 6 3.6508 -1.7652 2.2600 8 8 4.3764 -1.4241 3.1701 9 6 3.0379 -3.1419 2.2606 10 7 3.4706 -3.8687 3.4568 11 6 2.6805 -4.4476 4.3776 12 7 3.4481 -4.9927 5.2861 13 6 4.7282 -4.7831 4.9812 14 7 4.7931 -4.1033 3.8667 15 6 4.1575 2.5831 0.0000 16 6 5.6839 2.4584 0.0343 17 7 6.1141 1.6071 -1.0833 18 6 7.0592 2.0465 -1.9715 19 1 7.1771 3.1041 -2.1554 20 6 7.8697 1.1327 -2.6311 21 7 7.9733 -0.0999 -2.1814 22 14 8.8135 1.6526 -4.1571 23 1 8.5275 3.0793 -4.4539 24 1 10.2692 1.4774 -3.9224 25 1 8.3933 0.8141 -5.3085 26 6 5.5066 0.2777 -1.2332 27 6 3.9862 0.4247 -1.2501 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8465 -0.8900 33 1 5.0738 0.3402 1.2486 34 1 3.6654 0.9668 2.1386 35 1 2.8112 -1.1854 0.5213 36 1 1.9513 -3.0559 2.2604 37 1 3.3596 -3.6833 1.3709 38 1 1.6007 -4.4612 4.3685 39 1 5.5747 -5.1232 5.5592 40 1 3.8175 3.1322 0.8780 41 1 3.8562 3.1162 -0.9017 42 1 5.9927 2.0072 0.9772 43 1 6.1357 3.4456 -0.0635 44 1 8.5393 -0.7385 -2.6426 45 1 5.8392 -0.1726 -2.1684 46 1 5.8005 -0.3549 -0.3957 47 1 3.5242 -0.5626 -1.2618 48 1 3.6859 0.9773 -2.1403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162599542.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:52 Heat of formation + Delta-G solvation = 46.510868 kcal Electronic energy + Delta-G solvation = -30758.768940 eV Core-core repulsion = 26659.313341 eV Total energy + Delta-G solvation = -4099.455599 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.06783 -40.07502 -38.66429 -37.19519 -34.60677 -34.00057 -33.09472 -31.20359 -30.97058 -30.02032 -28.56988 -27.74804 -26.16449 -25.41170 -23.89763 -22.43947 -22.16311 -21.99325 -20.94215 -20.25346 -18.59143 -17.42610 -17.35678 -16.50774 -16.26767 -15.88933 -15.80480 -15.55943 -15.31841 -14.83373 -14.76347 -14.60537 -14.12764 -13.88629 -13.66777 -13.55810 -13.39777 -12.94968 -12.91703 -12.65897 -12.33148 -11.98351 -11.85812 -11.64706 -11.50316 -11.32807 -10.95893 -10.74973 -10.58496 -10.28747 -10.23156 -10.21332 -10.04488 -9.93673 -9.80850 -9.76923 -9.57404 -9.44417 -9.41413 -8.69847 -8.45051 -6.66740 -5.78582 -3.21302 1.60803 2.14796 2.71411 2.97322 3.24426 3.36351 3.44511 3.46420 3.68016 4.23108 4.37006 4.48951 4.75171 4.83882 4.86858 4.88625 4.95983 5.14777 5.20841 5.23186 5.28985 5.38807 5.43376 5.46806 5.50802 5.59010 5.65295 5.95356 6.00405 6.16133 6.18141 6.31062 6.33984 6.42635 6.55530 6.57810 6.64978 6.67864 6.73385 6.80384 6.92936 7.00689 7.35379 7.66782 7.78399 7.79821 8.05386 8.42528 8.44380 9.21012 9.84278 10.40589 11.29668 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011284 B = 0.003440 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.844518 B = 8138.699904 C = 9770.886267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.073 3.927 4 C -0.059 4.059 5 C 0.134 3.866 6 N -0.703 5.703 7 C 0.494 3.506 8 O -0.522 6.522 9 C 0.111 3.889 10 N -0.365 5.365 11 C 0.249 3.751 12 N -0.548 5.548 13 C 0.187 3.813 14 N -0.281 5.281 15 C -0.119 4.119 16 C 0.143 3.857 17 N -0.591 5.591 18 C -0.253 4.253 19 H 0.066 0.934 20 C 0.003 3.997 21 N -0.900 5.900 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.170 3.830 27 C -0.125 4.125 28 H 0.040 0.960 29 H 0.083 0.917 30 H 0.038 0.962 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.409 0.591 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.217 0.783 39 H 0.215 0.785 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.022 0.978 43 H 0.056 0.944 44 H 0.253 0.747 45 H 0.086 0.914 46 H 0.021 0.979 47 H 0.054 0.946 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.895 -4.109 6.453 20.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C -0.004 4.004 4 C -0.059 4.059 5 C 0.011 3.989 6 N -0.361 5.361 7 C 0.277 3.723 8 O -0.397 6.397 9 C -0.016 4.016 10 N -0.157 5.157 11 C -0.048 4.048 12 N -0.275 5.275 13 C -0.116 4.116 14 N -0.108 5.108 15 C -0.159 4.159 16 C 0.016 3.984 17 N -0.314 5.314 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.544 5.544 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.044 3.956 27 C -0.164 4.164 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.250 0.750 36 H 0.145 0.855 37 H 0.136 0.864 38 H 0.233 0.767 39 H 0.232 0.768 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.040 0.960 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.039 0.961 47 H 0.073 0.927 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.600 -4.059 6.893 19.333 hybrid contribution -0.311 0.432 -1.275 1.381 sum -17.911 -3.628 5.618 19.119 Atomic orbital electron populations 1.22707 0.81343 1.02409 0.99914 1.87532 1.19327 1.28987 1.95357 1.22773 0.93885 0.83809 0.99915 1.20814 0.91395 0.97335 0.96401 1.21461 0.99612 0.81386 0.96428 1.46126 1.50289 1.14820 1.24881 1.20266 0.82487 0.86195 0.83384 1.90792 1.36264 1.76741 1.35949 1.21595 1.01101 0.92012 0.86878 1.49992 1.04740 1.40769 1.20150 1.25999 0.99505 0.93288 0.86031 1.70498 1.02312 1.26888 1.27802 1.26017 0.95098 0.96808 0.93690 1.78287 0.96948 1.19588 1.15947 1.21988 0.99370 0.93471 1.01069 1.20930 0.90543 0.95516 0.91401 1.44036 1.44672 1.14914 1.27735 1.19209 1.10395 0.92277 1.16424 0.91654 1.25046 0.97522 0.96625 1.00387 1.70049 1.40750 1.04446 1.39147 0.86253 0.79473 0.77952 0.83262 1.20307 1.21741 1.21624 1.20719 0.86334 0.86806 1.01726 1.22111 1.00936 0.98344 0.95029 0.94089 0.89880 0.94359 0.93561 0.93016 0.89647 0.92625 0.74964 0.85509 0.86366 0.76677 0.76820 0.92715 0.91497 0.96045 0.92532 0.93690 0.89567 0.96079 0.92737 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.06 6.73 -35.23 -0.24 -4.30 16 3 C 0.07 0.84 4.80 37.16 0.18 1.02 16 4 C -0.06 -0.87 0.51 -154.47 -0.08 -0.95 16 5 C 0.13 2.15 3.80 -4.04 -0.02 2.13 16 6 N -0.70 -9.71 4.63 -60.30 -0.28 -9.99 16 7 C 0.49 7.30 7.87 -10.99 -0.09 7.21 16 8 O -0.52 -10.35 15.75 5.55 0.09 -10.27 16 9 C 0.11 1.11 7.03 -5.19 -0.04 1.07 16 10 N -0.37 -4.62 3.40 -63.81 -0.22 -4.84 16 11 C 0.25 2.60 12.63 -90.65 -1.14 1.46 16 12 N -0.55 -7.12 11.19 -15.83 -0.18 -7.30 16 13 C 0.19 2.53 13.03 -91.81 -1.20 1.34 16 14 N -0.28 -4.49 11.83 29.29 0.35 -4.15 16 15 C -0.12 -1.86 4.90 -26.61 -0.13 -1.99 16 16 C 0.14 2.85 6.05 -3.71 -0.02 2.83 16 17 N -0.59 -14.26 3.00 -172.58 -0.52 -14.78 16 18 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 19 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 20 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 21 N -0.90 -26.06 11.18 55.49 0.62 -25.44 16 22 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 C 0.17 3.87 4.81 -3.93 -0.02 3.85 16 27 C -0.12 -2.16 4.57 -26.83 -0.12 -2.28 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 1.72 4.99 -51.93 -0.26 1.46 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.41 4.88 4.71 -40.82 -0.19 4.69 16 36 H 0.13 0.64 8.09 -51.93 -0.42 0.22 16 37 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.22 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.22 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.02 0.45 6.69 -51.93 -0.35 0.10 16 43 H 0.06 1.12 7.93 -51.93 -0.41 0.70 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.09 2.25 6.05 -51.93 -0.31 1.94 16 46 H 0.02 0.53 6.70 -51.93 -0.35 0.18 16 47 H 0.05 0.86 6.50 -51.93 -0.34 0.52 16 48 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 379.54 15.07 5.72 5.72 Total: -1.00 -36.50 379.54 -8.73 -45.23 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -7.25 Total: 3.54 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: -1.79 Total: 10.07 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -0.22 Total: -66.49 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.15 Total: -14.56 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.50 -8.73 -45.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162599542.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.739 kcal (2) G-P(sol) polarization free energy of solvation -36.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds