Wall clock time and date at job start Tue Mar 31 2020 21:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42907 * 113.99391 * 2 1 4 4 C 1.53000 * 109.46669 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.46278 * 299.97318 * 4 3 2 6 6 N 1.46500 * 109.47445 * 60.02843 * 5 4 3 7 7 C 1.34769 * 120.00686 * 180.02562 * 6 5 4 8 8 O 1.21291 * 119.99891 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00489 * 179.97438 * 7 6 5 10 10 N 1.46502 * 109.47473 * 179.97438 * 9 7 6 11 11 C 1.34433 * 126.82080 * 125.00044 * 10 9 7 12 12 N 1.30828 * 108.07484 * 179.97438 * 11 10 9 13 13 C 1.33251 * 109.83052 * 0.02562 * 12 11 10 14 14 N 1.30709 * 108.94125 * 359.75202 * 13 12 11 15 15 C 1.53043 * 109.45946 * 180.02562 * 4 3 2 16 16 C 1.53188 * 109.31445 * 178.61633 * 15 4 3 17 17 N 1.46925 * 108.77701 * 54.63452 * 16 15 4 18 18 C 1.36933 * 120.63218 * 126.36931 * 17 16 15 19 19 H 1.07998 * 120.00198 * 332.45537 * 18 17 16 20 20 C 1.38819 * 119.99952 * 152.17898 * 18 17 16 21 21 N 1.31617 * 120.00072 * 343.15781 * 20 18 17 22 22 Si 1.86804 * 119.99834 * 163.15974 * 20 18 17 23 23 H 1.48501 * 109.47135 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.46995 * 120.00274 * 22 20 18 25 25 H 1.48504 * 109.46877 * 240.00049 * 22 20 18 26 26 C 1.46933 * 118.73707 * 306.64093 * 17 16 15 27 27 C 1.52758 * 109.00408 * 53.31408 * 26 17 16 28 28 H 1.08995 * 109.47196 * 59.99882 * 1 2 3 29 29 H 1.09006 * 109.46657 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46911 * 299.99495 * 1 2 3 31 31 H 1.08997 * 109.47211 * 60.00685 * 3 2 1 32 32 H 1.08997 * 109.47395 * 299.99600 * 3 2 1 33 33 H 1.09000 * 109.47493 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.47507 * 300.02902 * 5 4 3 35 35 H 0.97005 * 119.99731 * 0.02562 * 6 5 4 36 36 H 1.09000 * 109.47302 * 300.00602 * 9 7 6 37 37 H 1.09003 * 109.47106 * 60.00284 * 9 7 6 38 38 H 1.07991 * 125.96308 * 0.02562 * 11 10 9 39 39 H 1.07995 * 125.52798 * 179.97438 * 13 12 11 40 40 H 1.08999 * 109.49781 * 58.66074 * 15 4 3 41 41 H 1.09004 * 109.51980 * 298.58284 * 15 4 3 42 42 H 1.09000 * 109.58790 * 294.84843 * 16 15 4 43 43 H 1.09003 * 109.70840 * 174.49438 * 16 15 4 44 44 H 0.97002 * 120.00067 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.58175 * 173.14238 * 26 17 16 46 46 H 1.08993 * 109.58871 * 293.56927 * 26 17 16 47 47 H 1.09006 * 109.56332 * 185.55045 * 27 26 17 48 48 H 1.08994 * 109.39241 * 65.51309 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 3.9872 0.4259 1.2486 6 7 3.3918 -0.9127 1.2489 7 6 3.6508 -1.7652 2.2600 8 8 4.3764 -1.4241 3.1701 9 6 3.0379 -3.1419 2.2606 10 7 3.4706 -3.8687 3.4568 11 6 2.6805 -4.4476 4.3776 12 7 3.4481 -4.9927 5.2861 13 6 4.7282 -4.7831 4.9812 14 7 4.7931 -4.1033 3.8667 15 6 4.1575 2.5831 0.0000 16 6 5.6839 2.4584 0.0343 17 7 6.1141 1.6071 -1.0833 18 6 7.0592 2.0465 -1.9715 19 1 7.1771 3.1041 -2.1554 20 6 7.8697 1.1327 -2.6311 21 7 7.9733 -0.0999 -2.1814 22 14 8.8135 1.6526 -4.1571 23 1 8.5275 3.0793 -4.4539 24 1 10.2692 1.4774 -3.9224 25 1 8.3933 0.8141 -5.3085 26 6 5.5066 0.2777 -1.2332 27 6 3.9862 0.4247 -1.2501 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8465 -0.8900 33 1 5.0738 0.3402 1.2486 34 1 3.6654 0.9668 2.1386 35 1 2.8112 -1.1854 0.5213 36 1 1.9513 -3.0559 2.2604 37 1 3.3596 -3.6833 1.3709 38 1 1.6007 -4.4612 4.3685 39 1 5.5747 -5.1232 5.5592 40 1 3.8175 3.1322 0.8780 41 1 3.8562 3.1162 -0.9017 42 1 5.9927 2.0072 0.9772 43 1 6.1357 3.4456 -0.0635 44 1 8.5393 -0.7385 -2.6426 45 1 5.8392 -0.1726 -2.1684 46 1 5.8005 -0.3549 -0.3957 47 1 3.5242 -0.5626 -1.2618 48 1 3.6859 0.9773 -2.1403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162599542.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:50 Heat of formation + Delta-G solvation = 21.553101 kcal Electronic energy + Delta-G solvation = -30759.851190 eV Core-core repulsion = 26659.313341 eV Total energy + Delta-G solvation = -4100.537849 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.97474 -41.29954 -39.87807 -38.25347 -36.10467 -34.96376 -34.58409 -32.72324 -32.14553 -31.64314 -29.58630 -28.92397 -27.24954 -26.50394 -25.47110 -23.92216 -23.23099 -22.85698 -22.51412 -21.40327 -19.97926 -18.86966 -18.31815 -17.92107 -17.11422 -17.01681 -16.78432 -16.74658 -16.60150 -16.17821 -15.84060 -15.66180 -15.32535 -15.28190 -15.11748 -14.82184 -14.68411 -14.33782 -14.12014 -13.76241 -13.62665 -13.30320 -13.06814 -12.94691 -12.75231 -12.64627 -12.55793 -12.27081 -12.25011 -11.97099 -11.83736 -11.48703 -11.30696 -11.17492 -11.11056 -10.99083 -10.75861 -10.55920 -10.50406 -10.43501 -9.93841 -8.66253 -7.87074 -5.32645 0.73254 1.34619 1.44584 1.46214 1.56988 1.60444 2.04347 2.23846 2.50651 2.85321 3.27588 3.54345 3.62436 3.66732 3.74296 3.77274 3.98408 3.99448 4.11084 4.16406 4.28100 4.43969 4.47966 4.53400 4.56755 4.64716 4.71814 4.72917 4.75506 4.85178 4.91344 5.01232 5.03832 5.16651 5.24314 5.25816 5.28588 5.36503 5.48562 5.49774 5.59381 5.65227 5.80289 5.92313 6.28821 6.38801 6.69713 7.14443 7.15323 7.34589 7.87347 8.38312 9.18898 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011284 B = 0.003440 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.844518 B = 8138.699904 C = 9770.886267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.084 3.916 4 C -0.051 4.051 5 C 0.144 3.856 6 N -0.692 5.692 7 C 0.487 3.513 8 O -0.581 6.581 9 C 0.114 3.886 10 N -0.375 5.375 11 C 0.265 3.735 12 N -0.575 5.575 13 C 0.183 3.817 14 N -0.344 5.344 15 C -0.109 4.109 16 C 0.137 3.863 17 N -0.609 5.609 18 C -0.260 4.260 19 H 0.068 0.932 20 C -0.053 4.053 21 N -0.936 5.936 22 Si 0.966 3.034 23 H -0.264 1.264 24 H -0.297 1.297 25 H -0.289 1.289 26 C 0.182 3.818 27 C -0.108 4.108 28 H 0.045 0.955 29 H 0.105 0.895 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.033 0.967 34 H 0.059 0.941 35 H 0.420 0.580 36 H 0.189 0.811 37 H 0.133 0.867 38 H 0.273 0.727 39 H 0.233 0.767 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.004 0.996 43 H 0.055 0.945 44 H 0.247 0.753 45 H 0.047 0.953 46 H -0.014 1.014 47 H 0.071 0.929 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.032 -3.683 6.038 24.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.326 6.326 3 C 0.007 3.993 4 C -0.052 4.052 5 C 0.019 3.981 6 N -0.350 5.350 7 C 0.272 3.728 8 O -0.461 6.461 9 C -0.011 4.011 10 N -0.166 5.166 11 C -0.031 4.031 12 N -0.303 5.303 13 C -0.120 4.120 14 N -0.171 5.171 15 C -0.148 4.148 16 C 0.012 3.988 17 N -0.333 5.333 18 C -0.390 4.390 19 H 0.086 0.914 20 C -0.248 4.248 21 N -0.583 5.583 22 Si 0.795 3.205 23 H -0.188 1.188 24 H -0.224 1.224 25 H -0.216 1.216 26 C 0.056 3.944 27 C -0.147 4.147 28 H 0.063 0.937 29 H 0.123 0.877 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.264 0.736 36 H 0.206 0.794 37 H 0.150 0.850 38 H 0.288 0.712 39 H 0.249 0.751 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.022 0.978 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.004 0.996 47 H 0.090 0.910 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.797 -3.614 6.451 23.017 hybrid contribution 0.958 0.301 -1.072 1.469 sum -20.839 -3.313 5.379 21.775 Atomic orbital electron populations 1.22928 0.79130 1.04171 1.00523 1.87466 1.21487 1.28082 1.95521 1.22514 0.90594 0.84839 1.01342 1.20691 0.94478 0.96001 0.94000 1.21167 0.96671 0.82941 0.97285 1.46038 1.49831 1.14020 1.25088 1.21172 0.81516 0.87824 0.82290 1.90770 1.38875 1.78206 1.38209 1.21912 1.04065 0.88350 0.86725 1.50111 1.03938 1.41364 1.21225 1.27084 1.01304 0.90624 0.84047 1.70518 1.02257 1.28321 1.29182 1.26457 0.96236 0.95996 0.93298 1.78193 0.99835 1.21540 1.17559 1.21841 0.95389 0.94614 1.02948 1.21076 0.94122 0.94342 0.89272 1.44323 1.44679 1.15619 1.28653 1.19577 1.10422 0.92484 1.16530 0.91386 1.25818 0.98995 0.96724 1.03286 1.70230 1.41984 1.05571 1.40498 0.85220 0.77503 0.78155 0.79648 1.18808 1.22395 1.21572 1.20442 0.90106 0.85710 0.98117 1.21856 0.96346 0.99914 0.96603 0.93669 0.87651 0.93531 0.91842 0.91862 0.94868 0.92275 0.73571 0.79404 0.84964 0.71194 0.75133 0.89478 0.90731 0.97775 0.92642 0.94353 0.93451 0.99564 0.91033 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -6.70 6.73 -148.98 -1.00 -7.70 16 3 C 0.08 1.60 4.80 71.98 0.35 1.95 16 4 C -0.05 -1.42 0.51 -52.15 -0.03 -1.45 16 5 C 0.14 4.59 3.80 86.38 0.33 4.92 16 6 N -0.69 -18.36 4.63 -463.07 -2.14 -20.50 16 7 C 0.49 14.08 7.87 87.66 0.69 14.77 16 8 O -0.58 -23.80 15.75 -3.06 -0.05 -23.85 16 9 C 0.11 1.98 7.03 85.63 0.60 2.58 16 10 N -0.38 -8.89 3.40 -355.81 -1.21 -10.10 16 11 C 0.26 4.79 12.63 180.36 2.28 7.07 16 12 N -0.57 -14.24 11.19 -204.01 -2.28 -16.52 16 13 C 0.18 5.02 13.03 180.76 2.36 7.38 16 14 N -0.34 -11.22 11.83 -61.24 -0.72 -11.94 16 15 C -0.11 -3.21 4.90 30.67 0.15 -3.06 16 16 C 0.14 5.62 6.05 86.36 0.52 6.14 16 17 N -0.61 -30.49 3.00 -699.93 -2.10 -32.59 16 18 C -0.26 -14.36 9.58 84.04 0.81 -13.56 16 19 H 0.07 3.65 7.88 -2.91 -0.02 3.62 16 20 C -0.05 -3.01 4.92 84.86 0.42 -2.59 16 21 N -0.94 -57.00 11.18 21.65 0.24 -56.76 16 22 Si 0.97 45.41 29.59 68.60 2.03 47.44 16 23 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 25 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 26 C 0.18 8.69 4.81 86.22 0.41 9.10 16 27 C -0.11 -3.68 4.57 30.53 0.14 -3.54 16 28 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.03 1.42 4.99 -2.39 -0.01 1.41 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.42 9.00 4.71 -92.70 -0.44 8.56 16 36 H 0.19 0.85 8.09 -2.39 -0.02 0.83 16 37 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.27 1.25 8.06 -2.92 -0.02 1.22 16 39 H 0.23 4.86 8.06 -2.91 -0.02 4.83 16 40 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.00 0.19 6.69 -2.39 -0.02 0.18 16 43 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16 44 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 45 H 0.05 2.61 6.05 -2.39 -0.01 2.59 16 46 H -0.01 -0.73 6.70 -2.39 -0.02 -0.75 16 47 H 0.07 2.17 6.50 -2.38 -0.02 2.15 16 48 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -87.96 379.54 3.57 -84.39 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.54 Total: 16.91 kcal Atomic # 6 Polarization: 20.96 SS G_CDS: 10.27 Total: 31.23 kcal Atomic # 7 Polarization: -140.21 SS G_CDS: -8.22 Total: -148.42 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -1.05 Total: -31.54 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -87.96 3.57 -84.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162599542.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.946 kcal (2) G-P(sol) polarization free energy of solvation -87.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds