Wall clock time and date at job start Tue Mar 31 2020 21:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00125 * 2 1 4 4 C 1.52997 * 109.47359 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47286 * 180.02562 * 4 3 2 6 6 C 1.34810 * 126.59253 * 124.94978 * 5 4 3 7 7 C 1.36601 * 106.83888 * 180.02562 * 6 5 4 8 8 C 1.47525 * 125.76957 * 180.26820 * 7 6 5 9 9 O 1.21592 * 120.00149 * 359.71124 * 8 7 6 10 10 N 1.34776 * 119.99747 * 179.71289 * 8 7 6 11 11 C 1.46501 * 120.00072 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47049 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46935 * 175.02524 * 12 11 10 14 14 C 1.53001 * 115.55117 * 278.02879 * 13 12 11 15 15 N 1.46499 * 109.46967 * 303.90398 * 14 13 12 16 16 C 1.36940 * 120.00291 * 175.59181 * 15 14 13 17 17 H 1.08005 * 119.99346 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00266 * 179.97438 * 16 15 14 19 19 N 1.31613 * 119.99824 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99901 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47200 * 90.00314 * 20 18 16 22 22 H 1.48506 * 109.46999 * 210.00347 * 20 18 16 23 23 H 1.48498 * 109.47449 * 330.00128 * 20 18 16 24 24 C 1.53002 * 117.50200 * 132.32007 * 13 12 11 25 25 C 1.52998 * 60.00055 * 252.51021 * 24 13 12 26 26 N 1.34402 * 108.45703 * 359.97438 * 7 6 5 27 27 N 1.28760 * 109.52040 * 0.02562 * 26 7 6 28 28 H 1.09001 * 109.46891 * 299.99272 * 1 2 3 29 29 H 1.09001 * 109.47216 * 59.99310 * 1 2 3 30 30 H 1.09000 * 109.46971 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46287 * 60.00406 * 3 2 1 32 32 H 1.08991 * 109.47206 * 300.00751 * 3 2 1 33 33 H 1.09002 * 109.46994 * 60.00070 * 4 3 2 34 34 H 1.09000 * 109.47071 * 300.00893 * 4 3 2 35 35 H 1.07999 * 126.58560 * 0.02562 * 6 5 4 36 36 H 0.97006 * 119.99738 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.46540 * 299.99988 * 11 10 8 38 38 H 1.08995 * 109.46829 * 59.99740 * 11 10 8 39 39 H 1.09003 * 109.46909 * 295.01735 * 12 11 10 40 40 H 1.08995 * 109.47632 * 55.02577 * 12 11 10 41 41 H 1.09005 * 109.47173 * 63.89743 * 14 13 12 42 42 H 1.08999 * 109.47372 * 183.90234 * 14 13 12 43 43 H 0.97002 * 119.99952 * 355.58857 * 15 14 13 44 44 H 0.97008 * 120.00029 * 179.97438 * 19 18 16 45 45 H 1.09006 * 117.49575 * 0.02562 * 24 13 12 46 46 H 1.08998 * 117.49583 * 145.01592 * 24 13 12 47 47 H 1.09006 * 117.49288 * 252.50930 * 25 24 13 48 48 H 1.08998 * 117.49961 * 107.48944 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0250 3.0044 0.8871 7 6 5.3057 4.2869 0.5097 8 6 6.2417 5.2011 1.1914 9 8 6.8380 4.8313 2.1844 10 7 6.4357 6.4462 0.7134 11 6 7.3647 7.3543 1.3905 12 6 7.3993 8.6932 0.6510 13 6 8.2725 9.6817 1.4263 14 6 7.5877 10.3897 2.5971 15 7 6.3867 11.0775 2.1168 16 6 5.5573 11.7082 3.0053 17 1 5.7884 11.6982 4.0603 18 6 4.4196 12.3604 2.5501 19 7 4.1378 12.3721 1.2646 20 14 3.2879 13.2202 3.7623 21 1 3.7248 14.6290 3.9338 22 1 1.8961 13.1930 3.2450 23 1 3.3429 12.5220 5.0718 24 6 9.3177 10.4717 0.6362 25 6 9.7580 9.3465 1.5748 26 7 4.5899 4.5728 -0.5913 27 7 3.8817 3.5495 -0.9218 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8464 -0.8898 33 1 3.8567 0.6439 -0.8909 34 1 3.8574 0.6435 0.8890 35 1 5.4395 2.4774 1.7338 36 1 5.9602 6.7411 -0.0790 37 1 7.0330 7.5147 2.4164 38 1 8.3625 6.9157 1.3957 39 1 7.8142 8.5467 -0.3463 40 1 6.3872 9.0893 0.5690 41 1 7.3081 9.6553 3.3525 42 1 8.2728 11.1167 3.0331 43 1 6.1790 11.0862 1.1693 44 1 3.3425 12.8276 0.9464 45 1 9.3829 10.2876 -0.4362 46 1 9.5174 11.4962 0.9503 47 1 10.2474 9.6309 2.5064 48 1 10.1131 8.4218 1.1200 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164519717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:25 Heat of formation + Delta-G solvation = 50.891271 kcal Electronic energy + Delta-G solvation = -28032.892771 eV Core-core repulsion = 23933.627121 eV Total energy + Delta-G solvation = -4099.265650 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.49029 -39.41950 -38.62254 -38.16255 -35.33854 -34.74519 -33.88986 -31.50591 -30.80266 -30.63739 -29.43078 -27.01782 -25.95436 -24.53277 -24.38455 -22.78232 -22.57236 -22.14126 -21.68345 -20.46596 -18.80847 -18.06442 -17.17312 -17.04192 -16.95933 -16.29763 -16.09930 -15.86865 -15.59806 -15.29333 -14.93835 -14.76663 -14.41781 -14.25536 -14.15761 -13.74079 -13.29515 -13.05077 -12.87872 -12.65569 -12.61202 -12.28450 -12.22170 -11.98979 -11.82145 -11.48372 -11.38298 -11.08638 -10.89723 -10.81238 -10.74208 -10.57369 -10.36704 -10.16862 -10.05289 -9.87976 -9.60107 -9.57758 -9.28331 -8.91769 -8.79570 -6.85587 -5.71878 -2.99517 0.82164 1.52125 1.54328 3.10002 3.15335 3.26262 3.46611 3.51750 3.53373 3.91467 4.00594 4.10571 4.18466 4.47706 4.52444 4.64806 4.66014 4.73874 4.76946 4.84944 4.98259 5.08047 5.12222 5.13222 5.16169 5.21316 5.38806 5.50217 5.60331 5.67092 5.74421 5.82761 5.95261 5.95663 6.21631 6.24258 6.25213 6.38879 6.47411 6.49948 6.51666 6.67597 6.81312 6.88485 7.46170 7.74348 7.74742 8.19919 8.47346 9.58805 10.17464 10.52968 11.51015 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009859 B = 0.002233 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.370755 B =12537.233836 C =14689.586477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.049 3.951 4 C 0.126 3.874 5 N -0.364 5.364 6 C 0.098 3.902 7 C -0.097 4.097 8 C 0.603 3.397 9 O -0.542 6.542 10 N -0.708 5.708 11 C 0.126 3.874 12 C -0.093 4.093 13 C -0.118 4.118 14 C 0.188 3.812 15 N -0.727 5.727 16 C -0.237 4.237 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.905 3.095 21 H -0.291 1.291 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.167 4.167 25 C -0.178 4.178 26 N -0.198 5.198 27 N -0.063 5.063 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.207 0.793 36 H 0.409 0.591 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.026 0.974 42 H 0.017 0.983 43 H 0.385 0.615 44 H 0.254 0.746 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.092 0.908 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.911 -25.707 -4.633 26.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.029 4.029 4 C 0.005 3.995 5 N -0.150 5.150 6 C -0.059 4.059 7 C -0.236 4.236 8 C 0.386 3.614 9 O -0.419 6.419 10 N -0.358 5.358 11 C 0.004 3.996 12 C -0.131 4.131 13 C -0.119 4.119 14 C 0.060 3.940 15 N -0.372 5.372 16 C -0.368 4.368 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.582 5.582 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.204 4.204 25 C -0.215 4.215 26 N -0.072 5.072 27 N -0.044 5.044 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.224 0.776 36 H 0.245 0.755 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.110 0.890 41 H 0.044 0.956 42 H 0.035 0.965 43 H 0.219 0.781 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.113 0.887 47 H 0.110 0.890 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.575 -25.701 -5.009 26.191 hybrid contribution -0.781 0.501 0.811 1.233 sum -0.206 -25.199 -4.198 25.547 Atomic orbital electron populations 1.22817 0.79537 1.03298 1.00660 1.87769 1.20898 1.26434 1.95658 1.22634 0.91832 0.85836 1.02614 1.21685 0.93278 0.77968 1.06597 1.50295 1.30655 1.13547 1.20500 1.23400 0.92009 0.94893 0.95569 1.21555 1.07223 0.95591 0.99197 1.16696 0.80373 0.81263 0.83054 1.90807 1.49343 1.76270 1.25468 1.45835 1.45413 1.12793 1.31787 1.21412 0.92384 0.88555 0.97279 1.21276 1.02060 0.92501 0.97290 1.21569 0.89635 1.00271 1.00445 1.20177 0.88812 0.93151 0.91832 1.42311 1.23982 1.63400 1.07489 1.19229 1.01891 1.25635 0.90047 0.91280 1.24713 0.98755 1.01590 0.95963 1.69656 1.28033 1.48403 1.12071 0.86211 0.80327 0.79585 0.80212 1.21802 1.21838 1.20825 1.22996 1.03312 0.96850 0.97203 1.22966 0.97168 0.99730 1.01663 1.74680 1.03611 1.18734 1.10166 1.82012 1.20186 0.90442 1.11727 0.93594 0.93483 0.88994 0.92168 0.91151 0.87312 0.86685 0.77619 0.75539 0.90649 0.91547 0.91854 0.89050 0.95626 0.96493 0.78102 0.93591 0.89288 0.88719 0.88956 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.56 10.70 -35.23 -0.38 -2.94 16 3 C 0.05 0.30 6.14 37.16 0.23 0.52 16 4 C 0.13 0.65 6.91 -4.04 -0.03 0.62 16 5 N -0.36 -3.15 3.69 -61.06 -0.23 -3.38 16 6 C 0.10 0.90 11.27 -16.84 -0.19 0.71 16 7 C -0.10 -1.22 6.99 -83.55 -0.58 -1.81 16 8 C 0.60 8.83 7.82 -12.47 -0.10 8.73 16 9 O -0.54 -9.10 16.86 5.28 0.09 -9.01 16 10 N -0.71 -10.06 5.55 -61.35 -0.34 -10.40 16 11 C 0.13 1.87 5.49 -4.04 -0.02 1.84 16 12 C -0.09 -1.43 5.20 -26.73 -0.14 -1.57 16 13 C -0.12 -1.92 1.65 -154.51 -0.25 -2.17 16 14 C 0.19 3.84 6.15 -4.04 -0.02 3.81 16 15 N -0.73 -18.39 5.23 -59.91 -0.31 -18.70 16 16 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 17 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 20 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 C -0.17 -2.45 9.87 -26.73 -0.26 -2.71 16 25 C -0.18 -2.38 9.57 -26.73 -0.26 -2.63 16 26 N -0.20 -2.67 12.04 32.85 0.40 -2.28 16 27 N -0.06 -0.76 13.65 60.35 0.82 0.06 16 28 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.11 0.31 8.08 -51.93 -0.42 -0.11 16 35 H 0.21 1.23 8.06 -52.49 -0.42 0.80 16 36 H 0.41 5.46 8.16 -40.82 -0.33 5.12 16 37 H 0.08 1.27 7.96 -51.93 -0.41 0.86 16 38 H 0.07 0.92 7.72 -51.93 -0.40 0.52 16 39 H 0.06 0.85 7.93 -51.93 -0.41 0.44 16 40 H 0.09 1.66 6.94 -51.93 -0.36 1.30 16 41 H 0.03 0.54 7.96 -51.93 -0.41 0.13 16 42 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16 43 H 0.38 10.17 6.80 -40.82 -0.28 9.90 16 44 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.09 1.19 8.07 -51.93 -0.42 0.77 16 46 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 47 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.09 1.07 7.90 -51.93 -0.41 0.66 16 LS Contribution 410.17 15.07 6.18 6.18 Total: -1.00 -34.77 410.17 -6.46 -41.23 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -7.63 Total: 9.85 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -0.77 Total: -0.74 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: 1.06 Total: -62.30 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -0.29 Total: -11.95 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.77 -6.46 -41.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164519717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.126 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds