Wall clock time and date at job start Tue Mar 31 2020 21:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00125 * 2 1 4 4 C 1.52997 * 109.47359 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47286 * 180.02562 * 4 3 2 6 6 C 1.34810 * 126.59253 * 124.94978 * 5 4 3 7 7 C 1.36601 * 106.83888 * 180.02562 * 6 5 4 8 8 C 1.47525 * 125.76957 * 180.26820 * 7 6 5 9 9 O 1.21592 * 120.00149 * 359.71124 * 8 7 6 10 10 N 1.34776 * 119.99747 * 179.71289 * 8 7 6 11 11 C 1.46501 * 120.00072 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47049 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46935 * 175.02524 * 12 11 10 14 14 C 1.53001 * 115.55117 * 278.02879 * 13 12 11 15 15 N 1.46499 * 109.46967 * 303.90398 * 14 13 12 16 16 C 1.36940 * 120.00291 * 175.59181 * 15 14 13 17 17 H 1.08005 * 119.99346 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00266 * 179.97438 * 16 15 14 19 19 N 1.31613 * 119.99824 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99901 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47200 * 90.00314 * 20 18 16 22 22 H 1.48506 * 109.46999 * 210.00347 * 20 18 16 23 23 H 1.48498 * 109.47449 * 330.00128 * 20 18 16 24 24 C 1.53002 * 117.50200 * 132.32007 * 13 12 11 25 25 C 1.52998 * 60.00055 * 252.51021 * 24 13 12 26 26 N 1.34402 * 108.45703 * 359.97438 * 7 6 5 27 27 N 1.28760 * 109.52040 * 0.02562 * 26 7 6 28 28 H 1.09001 * 109.46891 * 299.99272 * 1 2 3 29 29 H 1.09001 * 109.47216 * 59.99310 * 1 2 3 30 30 H 1.09000 * 109.46971 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46287 * 60.00406 * 3 2 1 32 32 H 1.08991 * 109.47206 * 300.00751 * 3 2 1 33 33 H 1.09002 * 109.46994 * 60.00070 * 4 3 2 34 34 H 1.09000 * 109.47071 * 300.00893 * 4 3 2 35 35 H 1.07999 * 126.58560 * 0.02562 * 6 5 4 36 36 H 0.97006 * 119.99738 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.46540 * 299.99988 * 11 10 8 38 38 H 1.08995 * 109.46829 * 59.99740 * 11 10 8 39 39 H 1.09003 * 109.46909 * 295.01735 * 12 11 10 40 40 H 1.08995 * 109.47632 * 55.02577 * 12 11 10 41 41 H 1.09005 * 109.47173 * 63.89743 * 14 13 12 42 42 H 1.08999 * 109.47372 * 183.90234 * 14 13 12 43 43 H 0.97002 * 119.99952 * 355.58857 * 15 14 13 44 44 H 0.97008 * 120.00029 * 179.97438 * 19 18 16 45 45 H 1.09006 * 117.49575 * 0.02562 * 24 13 12 46 46 H 1.08998 * 117.49583 * 145.01592 * 24 13 12 47 47 H 1.09006 * 117.49288 * 252.50930 * 25 24 13 48 48 H 1.08998 * 117.49961 * 107.48944 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0250 3.0044 0.8871 7 6 5.3057 4.2869 0.5097 8 6 6.2417 5.2011 1.1914 9 8 6.8380 4.8313 2.1844 10 7 6.4357 6.4462 0.7134 11 6 7.3647 7.3543 1.3905 12 6 7.3993 8.6932 0.6510 13 6 8.2725 9.6817 1.4263 14 6 7.5877 10.3897 2.5971 15 7 6.3867 11.0775 2.1168 16 6 5.5573 11.7082 3.0053 17 1 5.7884 11.6982 4.0603 18 6 4.4196 12.3604 2.5501 19 7 4.1378 12.3721 1.2646 20 14 3.2879 13.2202 3.7623 21 1 3.7248 14.6290 3.9338 22 1 1.8961 13.1930 3.2450 23 1 3.3429 12.5220 5.0718 24 6 9.3177 10.4717 0.6362 25 6 9.7580 9.3465 1.5748 26 7 4.5899 4.5728 -0.5913 27 7 3.8817 3.5495 -0.9218 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8464 -0.8898 33 1 3.8567 0.6439 -0.8909 34 1 3.8574 0.6435 0.8890 35 1 5.4395 2.4774 1.7338 36 1 5.9602 6.7411 -0.0790 37 1 7.0330 7.5147 2.4164 38 1 8.3625 6.9157 1.3957 39 1 7.8142 8.5467 -0.3463 40 1 6.3872 9.0893 0.5690 41 1 7.3081 9.6553 3.3525 42 1 8.2728 11.1167 3.0331 43 1 6.1790 11.0862 1.1693 44 1 3.3425 12.8276 0.9464 45 1 9.3829 10.2876 -0.4362 46 1 9.5174 11.4962 0.9503 47 1 10.2474 9.6309 2.5064 48 1 10.1131 8.4218 1.1200 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164519717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:24 Heat of formation + Delta-G solvation = 24.975787 kcal Electronic energy + Delta-G solvation = -28034.016551 eV Core-core repulsion = 23933.627121 eV Total energy + Delta-G solvation = -4100.389430 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.32225 -40.56689 -39.46467 -39.07830 -36.16766 -35.95837 -35.68430 -32.77920 -32.37269 -31.51335 -30.40586 -27.81845 -27.42958 -25.49936 -25.13553 -24.59994 -23.77177 -22.85450 -22.84072 -21.49478 -20.04120 -19.22251 -18.86663 -17.83118 -17.54812 -17.21692 -16.99775 -16.74167 -16.62949 -16.47280 -16.12631 -15.85325 -15.63111 -15.44071 -15.18263 -14.94912 -14.71044 -14.51326 -14.14713 -13.89382 -13.51368 -13.25566 -13.14817 -12.99952 -12.81252 -12.78990 -12.54364 -12.44792 -12.25798 -12.17877 -12.11032 -11.92043 -11.84377 -11.45660 -11.29592 -11.07157 -10.89620 -10.81975 -10.52029 -10.48893 -10.05365 -8.95518 -7.93538 -5.20866 0.06152 0.55619 0.88850 1.45981 1.47620 1.55934 2.08731 2.20483 2.55151 2.63678 2.92291 3.13154 3.39601 3.42781 3.70753 3.76036 3.86074 3.87187 3.91075 4.01136 4.06918 4.11162 4.16960 4.27239 4.41985 4.42584 4.45585 4.50749 4.52905 4.57954 4.66828 4.76705 4.82581 4.87251 4.97100 5.00851 5.10650 5.20920 5.29347 5.32058 5.36898 5.40205 5.41152 5.50335 5.95834 6.28841 6.38152 6.82825 7.08734 7.35796 8.13063 8.37998 9.29802 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009859 B = 0.002233 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.370755 B =12537.233836 C =14689.586477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.051 3.949 4 C 0.122 3.878 5 N -0.350 5.350 6 C 0.121 3.879 7 C -0.124 4.124 8 C 0.603 3.397 9 O -0.568 6.568 10 N -0.709 5.709 11 C 0.136 3.864 12 C -0.081 4.081 13 C -0.141 4.141 14 C 0.188 3.812 15 N -0.736 5.736 16 C -0.244 4.244 17 H 0.071 0.929 18 C -0.074 4.074 19 N -0.966 5.966 20 Si 0.970 3.030 21 H -0.286 1.286 22 H -0.295 1.295 23 H -0.272 1.272 24 C -0.166 4.166 25 C -0.147 4.147 26 N -0.223 5.223 27 N -0.085 5.085 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.106 0.894 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.122 0.878 34 H 0.149 0.851 35 H 0.243 0.757 36 H 0.412 0.588 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.056 0.944 41 H 0.018 0.982 42 H 0.016 0.984 43 H 0.376 0.624 44 H 0.251 0.749 45 H 0.106 0.894 46 H 0.083 0.917 47 H 0.099 0.901 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.780 -27.670 -4.145 28.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C -0.027 4.027 4 C 0.002 3.998 5 N -0.135 5.135 6 C -0.037 4.037 7 C -0.264 4.264 8 C 0.388 3.612 9 O -0.446 6.446 10 N -0.359 5.359 11 C 0.013 3.987 12 C -0.119 4.119 13 C -0.142 4.142 14 C 0.062 3.938 15 N -0.379 5.379 16 C -0.376 4.376 17 H 0.089 0.911 18 C -0.267 4.267 19 N -0.617 5.617 20 Si 0.799 3.201 21 H -0.213 1.213 22 H -0.222 1.222 23 H -0.197 1.197 24 C -0.203 4.203 25 C -0.185 4.185 26 N -0.097 5.097 27 N -0.066 5.066 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.125 0.875 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.140 0.860 34 H 0.166 0.834 35 H 0.259 0.741 36 H 0.248 0.752 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.036 0.964 42 H 0.033 0.967 43 H 0.209 0.791 44 H 0.059 0.941 45 H 0.124 0.876 46 H 0.102 0.898 47 H 0.118 0.882 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.451 -27.686 -4.523 28.091 hybrid contribution -1.051 1.009 0.689 1.611 sum 0.400 -26.677 -3.834 26.954 Atomic orbital electron populations 1.22983 0.78663 1.04395 1.00916 1.87745 1.21926 1.26448 1.95683 1.22567 0.92517 0.85716 1.01896 1.22051 0.92520 0.76281 1.08956 1.50491 1.29856 1.13938 1.19256 1.23896 0.90636 0.93660 0.95491 1.21469 1.08174 0.96782 0.99981 1.16937 0.80247 0.81332 0.82707 1.90779 1.50537 1.76784 1.26548 1.45847 1.45370 1.12839 1.31805 1.21262 0.93073 0.88592 0.95788 1.21118 1.00077 0.92219 0.98447 1.21395 0.91146 1.01578 1.00084 1.20242 0.87335 0.92706 0.93565 1.42473 1.25156 1.63536 1.06758 1.19613 1.02270 1.25046 0.90646 0.91061 1.25510 1.00500 1.03013 0.97659 1.69810 1.28468 1.49651 1.13776 0.85188 0.77943 0.78505 0.78430 1.21327 1.22172 1.19722 1.23059 1.02116 0.96740 0.98385 1.23063 0.93811 1.00037 1.01565 1.74652 1.04303 1.19788 1.10914 1.81936 1.20571 0.91100 1.12968 0.93265 0.93346 0.87541 0.92493 0.92390 0.85954 0.83360 0.74091 0.75194 0.93274 0.90011 0.89487 0.92535 0.96378 0.96657 0.79100 0.94068 0.87575 0.89848 0.88246 0.86696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.40 -4.64 10.70 -148.98 -1.59 -6.23 16 3 C 0.05 0.55 6.14 71.98 0.44 0.99 16 4 C 0.12 0.95 6.91 86.38 0.60 1.54 16 5 N -0.35 -5.43 3.69 -347.10 -1.28 -6.71 16 6 C 0.12 1.99 11.27 83.85 0.95 2.93 16 7 C -0.12 -3.08 6.99 40.82 0.29 -2.80 16 8 C 0.60 17.54 7.82 86.69 0.68 18.22 16 9 O -0.57 -18.74 16.86 -4.00 -0.07 -18.81 16 10 N -0.71 -20.29 5.55 -466.29 -2.59 -22.88 16 11 C 0.14 3.98 5.49 86.38 0.47 4.46 16 12 C -0.08 -2.45 5.20 30.59 0.16 -2.29 16 13 C -0.14 -4.48 1.65 -52.18 -0.09 -4.57 16 14 C 0.19 7.77 6.15 86.38 0.53 8.30 16 15 N -0.74 -38.15 5.23 -343.44 -1.80 -39.94 16 16 C -0.24 -13.99 9.99 84.03 0.84 -13.15 16 17 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 18 C -0.07 -4.37 5.50 84.86 0.47 -3.91 16 19 N -0.97 -60.00 13.06 21.65 0.28 -59.72 16 20 Si 0.97 47.30 29.55 68.60 2.03 49.32 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 22 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 23 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 24 C -0.17 -4.60 9.87 30.59 0.30 -4.30 16 25 C -0.15 -3.56 9.57 30.59 0.29 -3.27 16 26 N -0.22 -6.04 12.04 -49.99 -0.60 -6.64 16 27 N -0.09 -2.02 13.65 37.02 0.51 -1.51 16 28 H 0.05 0.35 8.14 -2.39 -0.02 0.34 16 29 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.15 0.23 8.08 -2.39 -0.02 0.21 16 35 H 0.24 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.41 11.27 8.16 -92.70 -0.76 10.51 16 37 H 0.05 1.69 7.96 -2.39 -0.02 1.67 16 38 H 0.08 2.15 7.72 -2.39 -0.02 2.13 16 39 H 0.09 2.21 7.93 -2.39 -0.02 2.19 16 40 H 0.06 2.12 6.94 -2.39 -0.02 2.11 16 41 H 0.02 0.78 7.96 -2.38 -0.02 0.76 16 42 H 0.02 0.65 8.10 -2.39 -0.02 0.63 16 43 H 0.38 20.57 6.80 -92.71 -0.63 19.94 16 44 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 45 H 0.11 2.58 8.07 -2.38 -0.02 2.56 16 46 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 47 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 48 H 0.11 2.27 7.90 -2.39 -0.02 2.25 16 Total: -1.00 -76.54 410.17 1.65 -74.88 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: -0.41 Total: 34.61 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 7.18 Total: 3.63 kcal Atomic # 7 Polarization: -131.93 SS G_CDS: -5.48 Total: -137.41 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -1.66 Total: -25.04 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.32 kcal Total: -76.54 1.65 -74.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164519717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.859 kcal (2) G-P(sol) polarization free energy of solvation -76.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds