Wall clock time and date at job start Tue Mar 31 2020 21:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37365 * 125.83069 * 2 1 4 4 N 1.29398 * 108.82924 * 179.76897 * 3 2 1 5 5 N 1.40178 * 108.13980 * 0.38678 * 4 3 2 6 6 C 1.46500 * 126.34726 * 179.87399 * 5 4 3 7 7 C 1.52996 * 109.47140 * 269.68778 * 6 5 4 8 8 C 1.50699 * 109.46952 * 179.97438 * 7 6 5 9 9 O 1.21284 * 120.00162 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00045 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99963 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47191 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47432 * 175.02054 * 12 11 10 14 14 C 1.52996 * 115.55260 * 278.03668 * 13 12 11 15 15 N 1.46506 * 109.46758 * 303.89700 * 14 13 12 16 16 C 1.36940 * 119.99644 * 175.59339 * 15 14 13 17 17 H 1.08004 * 120.00017 * 359.97438 * 16 15 14 18 18 C 1.38810 * 119.99781 * 180.02562 * 16 15 14 19 19 N 1.31614 * 120.00025 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99829 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.46820 * 90.00028 * 20 18 16 22 22 H 1.48499 * 109.46997 * 210.00098 * 20 18 16 23 23 H 1.48498 * 109.47161 * 329.99779 * 20 18 16 24 24 C 1.52998 * 117.49553 * 132.32490 * 13 12 11 25 25 C 1.52993 * 60.00125 * 252.51455 * 24 13 12 26 26 C 1.34818 * 125.83466 * 180.02562 * 2 1 3 27 27 O 1.21813 * 126.30091 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.47287 * 269.97509 * 1 2 3 29 29 H 1.08998 * 109.46924 * 29.97895 * 1 2 3 30 30 H 1.08998 * 109.46608 * 149.97420 * 1 2 3 31 31 H 1.07996 * 125.58121 * 0.02562 * 3 2 1 32 32 H 1.09004 * 109.46693 * 149.69001 * 6 5 4 33 33 H 1.09003 * 109.47247 * 29.68862 * 6 5 4 34 34 H 1.09004 * 109.47145 * 60.00500 * 7 6 5 35 35 H 1.09003 * 109.47120 * 300.00162 * 7 6 5 36 36 H 0.96995 * 119.99768 * 0.02562 * 10 8 7 37 37 H 1.08994 * 109.47192 * 299.99732 * 11 10 8 38 38 H 1.09004 * 109.47072 * 60.00185 * 11 10 8 39 39 H 1.09002 * 109.46938 * 295.02640 * 12 11 10 40 40 H 1.09007 * 109.46905 * 55.01869 * 12 11 10 41 41 H 1.09002 * 109.47284 * 63.89268 * 14 13 12 42 42 H 1.08996 * 109.46941 * 183.90029 * 14 13 12 43 43 H 0.96992 * 120.00046 * 355.59476 * 15 14 13 44 44 H 0.97000 * 119.99850 * 179.97438 * 19 18 16 45 45 H 1.08995 * 117.50428 * 0.02562 * 24 13 12 46 46 H 1.09004 * 117.49755 * 145.02781 * 24 13 12 47 47 H 1.09003 * 117.49997 * 252.51338 * 25 24 13 48 48 H 1.09004 * 117.50295 * 107.49462 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1137 0.0000 4 7 3.5066 0.7353 0.0049 5 7 3.5344 -0.6661 -0.0007 6 6 4.7314 -1.5108 -0.0004 7 6 5.1480 -1.8054 -1.4428 8 6 6.3797 -2.6737 -1.4425 9 8 6.8752 -3.0230 -0.3921 10 7 6.9300 -3.0631 -2.6096 11 6 8.1270 -3.9077 -2.6093 12 6 8.5430 -4.2033 -4.0517 13 6 9.8611 -4.9801 -4.0535 14 6 11.1263 -4.1333 -3.9025 15 7 11.1620 -3.1165 -4.9566 16 6 12.1605 -2.1795 -4.9706 17 1 12.9215 -2.1899 -4.2043 18 6 12.1940 -1.2157 -5.9690 19 7 11.2657 -1.2022 -6.9020 20 14 13.5557 0.0629 -5.9877 21 1 14.7012 -0.4456 -6.7841 22 1 13.0477 1.3183 -6.5968 23 1 14.0007 0.3324 -4.5968 24 6 9.9456 -6.2260 -4.9374 25 6 9.8619 -6.3713 -3.4167 26 6 2.2543 -1.0930 -0.0005 27 8 1.8806 -2.2524 -0.0006 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3632 -0.8898 -0.5142 31 1 1.9249 2.1373 0.0004 32 1 4.5151 -2.4473 0.5138 33 1 5.5415 -0.9929 0.5131 34 1 5.3643 -0.8689 -1.9570 35 1 4.3379 -2.3233 -1.9564 36 1 6.5334 -2.7841 -3.4497 37 1 8.9371 -3.3896 -2.0962 38 1 7.9109 -4.8440 -2.0948 39 1 7.7699 -4.7982 -4.5381 40 1 8.6732 -3.2654 -4.5918 41 1 11.1232 -3.6459 -2.9275 42 1 12.0043 -4.7738 -3.9858 43 1 10.4783 -3.1069 -5.6446 44 1 11.2889 -0.5285 -7.5994 45 1 9.0623 -6.4921 -5.5180 46 1 10.9028 -6.4426 -5.4118 47 1 10.7641 -6.6834 -2.8905 48 1 8.9235 -6.7331 -2.9964 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166371933.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:16 Heat of formation + Delta-G solvation = 42.300152 kcal Electronic energy + Delta-G solvation = -28279.661724 eV Core-core repulsion = 24180.023535 eV Total energy + Delta-G solvation = -4099.638189 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.73537 -39.77953 -38.27418 -37.55055 -36.02864 -34.80205 -33.92993 -33.10487 -30.83221 -30.63222 -29.48221 -27.82492 -26.01595 -25.15456 -23.28808 -22.73852 -22.53751 -21.78323 -21.36500 -20.46071 -18.54739 -18.03683 -17.23192 -17.09468 -16.78519 -16.43110 -15.94685 -15.88136 -15.66961 -15.17910 -14.84090 -14.57267 -14.41636 -14.16956 -13.77032 -13.49583 -13.23121 -13.12760 -13.01097 -12.97620 -12.67508 -12.56497 -12.31108 -12.21594 -11.85496 -11.54179 -11.39157 -11.11730 -10.92915 -10.83789 -10.58597 -10.56093 -10.48653 -10.15170 -9.92413 -9.88363 -9.62751 -9.31805 -8.98141 -8.90031 -8.83098 -6.89562 -5.75892 -3.03460 1.40550 1.60078 2.34289 2.61841 2.72697 3.25307 3.44303 3.49674 3.51140 4.05807 4.07362 4.34618 4.52885 4.57608 4.61780 4.73272 4.77146 4.88947 5.02145 5.04227 5.10812 5.17017 5.21081 5.34203 5.36361 5.50738 5.55721 5.60728 5.61977 5.70619 5.79010 5.86799 5.92403 6.17574 6.17631 6.20592 6.22396 6.44180 6.46450 6.48157 6.61940 6.77991 6.84924 7.27531 7.49845 7.71572 7.71585 8.19960 8.43508 9.55084 10.13252 10.48961 11.47077 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011614 B = 0.002122 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.353837 B =13193.541067 C =14917.840123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.564 5.564 3 C 0.251 3.749 4 N -0.277 5.277 5 N -0.451 5.451 6 C 0.177 3.823 7 C -0.161 4.161 8 C 0.520 3.480 9 O -0.544 6.544 10 N -0.724 5.724 11 C 0.125 3.875 12 C -0.092 4.092 13 C -0.118 4.118 14 C 0.187 3.813 15 N -0.727 5.727 16 C -0.236 4.236 17 H 0.069 0.931 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.167 4.167 25 C -0.178 4.178 26 C 0.642 3.358 27 O -0.553 6.553 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.402 0.598 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.026 0.974 42 H 0.018 0.982 43 H 0.384 0.616 44 H 0.254 0.746 45 H 0.088 0.912 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.209 1.393 11.964 26.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.293 5.293 3 C -0.048 4.048 4 N -0.098 5.098 5 N -0.271 5.271 6 C 0.056 3.944 7 C -0.202 4.202 8 C 0.306 3.694 9 O -0.422 6.422 10 N -0.375 5.375 11 C 0.002 3.998 12 C -0.130 4.130 13 C -0.119 4.119 14 C 0.060 3.940 15 N -0.372 5.372 16 C -0.368 4.368 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.204 4.204 25 C -0.215 4.215 26 C 0.341 3.659 27 O -0.426 6.426 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.247 0.753 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.236 0.764 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.044 0.956 42 H 0.035 0.965 43 H 0.218 0.782 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.113 0.887 47 H 0.111 0.889 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.928 0.645 12.783 25.390 hybrid contribution -0.432 0.801 -0.893 1.275 sum -22.359 1.446 11.890 25.365 Atomic orbital electron populations 1.21824 0.74181 1.04778 1.03555 1.45968 1.08940 1.06733 1.67677 1.25973 0.85833 0.94771 0.98211 1.77067 1.18128 0.91999 1.22583 1.49059 1.06244 1.03132 1.68705 1.21200 0.83316 0.93653 0.96202 1.22041 0.97211 1.01617 0.99339 1.20199 0.84831 0.80417 0.83994 1.90723 1.63637 1.56672 1.31137 1.46024 1.30254 1.52736 1.08458 1.21370 0.86447 0.94098 0.97844 1.21270 0.94743 1.01715 0.95297 1.21566 0.96713 0.88905 1.04754 1.20180 0.91250 0.89874 0.92697 1.42307 1.32393 1.32539 1.29943 1.19239 1.03630 1.05496 1.08408 0.91253 1.24714 0.98838 0.99638 0.97855 1.69655 1.35191 1.37233 1.16233 0.86197 0.81479 0.81176 0.77411 1.21785 1.21809 1.20775 1.22994 1.02955 1.01675 0.92742 1.22965 1.02671 0.99921 0.95954 1.16817 0.82179 0.85134 0.81748 1.91102 1.77721 1.15189 1.58622 0.90872 0.89263 0.89389 0.75274 0.87782 0.87611 0.87838 0.88422 0.76414 0.90826 0.91769 0.92020 0.89189 0.95613 0.96453 0.78157 0.93605 0.89331 0.88702 0.88931 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.33 11.05 59.85 0.66 0.99 16 2 N -0.56 -4.11 3.14 -130.11 -0.41 -4.52 16 3 C 0.25 1.41 12.66 -89.12 -1.13 0.28 16 4 N -0.28 -2.61 12.53 29.87 0.37 -2.24 16 5 N -0.45 -5.02 3.63 -65.12 -0.24 -5.26 16 6 C 0.18 1.99 5.68 -4.04 -0.02 1.96 16 7 C -0.16 -1.69 6.02 -27.89 -0.17 -1.86 16 8 C 0.52 6.99 7.83 -10.99 -0.09 6.91 16 9 O -0.54 -9.16 15.98 5.55 0.09 -9.07 16 10 N -0.72 -9.23 5.56 -60.29 -0.33 -9.56 16 11 C 0.13 1.81 5.49 -4.04 -0.02 1.79 16 12 C -0.09 -1.37 5.20 -26.73 -0.14 -1.51 16 13 C -0.12 -1.91 1.65 -154.51 -0.25 -2.16 16 14 C 0.19 3.81 6.15 -4.04 -0.02 3.79 16 15 N -0.73 -18.19 5.23 -59.91 -0.31 -18.51 16 16 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 17 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 19 N -0.93 -27.96 13.06 55.49 0.72 -27.24 16 20 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 24 C -0.17 -2.44 9.87 -26.74 -0.26 -2.70 16 25 C -0.18 -2.39 9.57 -26.74 -0.26 -2.65 16 26 C 0.64 7.52 8.60 -86.73 -0.75 6.77 16 27 O -0.55 -8.33 17.71 5.09 0.09 -8.24 16 28 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 30 H 0.09 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.23 0.02 8.06 -52.49 -0.42 -0.40 16 32 H 0.10 1.25 8.07 -51.93 -0.42 0.83 16 33 H 0.11 1.18 8.10 -51.93 -0.42 0.76 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.40 4.23 8.47 -40.82 -0.35 3.88 16 37 H 0.07 1.24 7.96 -51.93 -0.41 0.83 16 38 H 0.06 0.91 7.72 -51.93 -0.40 0.51 16 39 H 0.06 0.79 7.93 -51.93 -0.41 0.38 16 40 H 0.09 1.56 6.94 -51.92 -0.36 1.20 16 41 H 0.03 0.54 7.96 -51.93 -0.41 0.13 16 42 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 43 H 0.38 10.01 6.80 -40.82 -0.28 9.73 16 44 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.09 1.17 8.07 -51.93 -0.42 0.75 16 46 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 47 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.09 1.08 7.90 -51.93 -0.41 0.67 16 LS Contribution 408.11 15.07 6.15 6.15 Total: -1.00 -37.56 408.11 -9.22 -46.78 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -7.64 Total: 9.88 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -2.70 Total: 4.33 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -0.19 Total: -67.31 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.18 Total: -17.31 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -37.56 -9.22 -46.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166371933.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.079 kcal (2) G-P(sol) polarization free energy of solvation -37.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds