Wall clock time and date at job start Tue Mar 31 2020 21:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37365 * 125.83069 * 2 1 4 4 N 1.29398 * 108.82924 * 179.76897 * 3 2 1 5 5 N 1.40178 * 108.13980 * 0.38678 * 4 3 2 6 6 C 1.46500 * 126.34726 * 179.87399 * 5 4 3 7 7 C 1.52996 * 109.47140 * 269.68778 * 6 5 4 8 8 C 1.50699 * 109.46952 * 179.97438 * 7 6 5 9 9 O 1.21284 * 120.00162 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00045 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99963 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47191 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47432 * 175.02054 * 12 11 10 14 14 C 1.52996 * 115.55260 * 278.03668 * 13 12 11 15 15 N 1.46506 * 109.46758 * 303.89700 * 14 13 12 16 16 C 1.36940 * 119.99644 * 175.59339 * 15 14 13 17 17 H 1.08004 * 120.00017 * 359.97438 * 16 15 14 18 18 C 1.38810 * 119.99781 * 180.02562 * 16 15 14 19 19 N 1.31614 * 120.00025 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99829 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.46820 * 90.00028 * 20 18 16 22 22 H 1.48499 * 109.46997 * 210.00098 * 20 18 16 23 23 H 1.48498 * 109.47161 * 329.99779 * 20 18 16 24 24 C 1.52998 * 117.49553 * 132.32490 * 13 12 11 25 25 C 1.52993 * 60.00125 * 252.51455 * 24 13 12 26 26 C 1.34818 * 125.83466 * 180.02562 * 2 1 3 27 27 O 1.21813 * 126.30091 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.47287 * 269.97509 * 1 2 3 29 29 H 1.08998 * 109.46924 * 29.97895 * 1 2 3 30 30 H 1.08998 * 109.46608 * 149.97420 * 1 2 3 31 31 H 1.07996 * 125.58121 * 0.02562 * 3 2 1 32 32 H 1.09004 * 109.46693 * 149.69001 * 6 5 4 33 33 H 1.09003 * 109.47247 * 29.68862 * 6 5 4 34 34 H 1.09004 * 109.47145 * 60.00500 * 7 6 5 35 35 H 1.09003 * 109.47120 * 300.00162 * 7 6 5 36 36 H 0.96995 * 119.99768 * 0.02562 * 10 8 7 37 37 H 1.08994 * 109.47192 * 299.99732 * 11 10 8 38 38 H 1.09004 * 109.47072 * 60.00185 * 11 10 8 39 39 H 1.09002 * 109.46938 * 295.02640 * 12 11 10 40 40 H 1.09007 * 109.46905 * 55.01869 * 12 11 10 41 41 H 1.09002 * 109.47284 * 63.89268 * 14 13 12 42 42 H 1.08996 * 109.46941 * 183.90029 * 14 13 12 43 43 H 0.96992 * 120.00046 * 355.59476 * 15 14 13 44 44 H 0.97000 * 119.99850 * 179.97438 * 19 18 16 45 45 H 1.08995 * 117.50428 * 0.02562 * 24 13 12 46 46 H 1.09004 * 117.49755 * 145.02781 * 24 13 12 47 47 H 1.09003 * 117.49997 * 252.51338 * 25 24 13 48 48 H 1.09004 * 117.50295 * 107.49462 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1137 0.0000 4 7 3.5066 0.7353 0.0049 5 7 3.5344 -0.6661 -0.0007 6 6 4.7314 -1.5108 -0.0004 7 6 5.1480 -1.8054 -1.4428 8 6 6.3797 -2.6737 -1.4425 9 8 6.8752 -3.0230 -0.3921 10 7 6.9300 -3.0631 -2.6096 11 6 8.1270 -3.9077 -2.6093 12 6 8.5430 -4.2033 -4.0517 13 6 9.8611 -4.9801 -4.0535 14 6 11.1263 -4.1333 -3.9025 15 7 11.1620 -3.1165 -4.9566 16 6 12.1605 -2.1795 -4.9706 17 1 12.9215 -2.1899 -4.2043 18 6 12.1940 -1.2157 -5.9690 19 7 11.2657 -1.2022 -6.9020 20 14 13.5557 0.0629 -5.9877 21 1 14.7012 -0.4456 -6.7841 22 1 13.0477 1.3183 -6.5968 23 1 14.0007 0.3324 -4.5968 24 6 9.9456 -6.2260 -4.9374 25 6 9.8619 -6.3713 -3.4167 26 6 2.2543 -1.0930 -0.0005 27 8 1.8806 -2.2524 -0.0006 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3632 -0.8898 -0.5142 31 1 1.9249 2.1373 0.0004 32 1 4.5151 -2.4473 0.5138 33 1 5.5415 -0.9929 0.5131 34 1 5.3643 -0.8689 -1.9570 35 1 4.3379 -2.3233 -1.9564 36 1 6.5334 -2.7841 -3.4497 37 1 8.9371 -3.3896 -2.0962 38 1 7.9109 -4.8440 -2.0948 39 1 7.7699 -4.7982 -4.5381 40 1 8.6732 -3.2654 -4.5918 41 1 11.1232 -3.6459 -2.9275 42 1 12.0043 -4.7738 -3.9858 43 1 10.4783 -3.1069 -5.6446 44 1 11.2889 -0.5285 -7.5994 45 1 9.0623 -6.4921 -5.5180 46 1 10.9028 -6.4426 -5.4118 47 1 10.7641 -6.6834 -2.8905 48 1 8.9235 -6.7331 -2.9964 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166371933.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:15 Heat of formation + Delta-G solvation = 16.617640 kcal Electronic energy + Delta-G solvation = -28280.775402 eV Core-core repulsion = 24180.023535 eV Total energy + Delta-G solvation = -4100.751867 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.41402 -40.90969 -39.56076 -38.42803 -36.75675 -36.09128 -35.74638 -33.85426 -32.79488 -31.65205 -30.46043 -28.33275 -27.80447 -26.05345 -24.62709 -24.33523 -23.32083 -22.90481 -22.16276 -21.53868 -19.94821 -19.08324 -18.77969 -17.98622 -17.67462 -17.24171 -17.02998 -16.77793 -16.75544 -16.55067 -16.19223 -15.75382 -15.54354 -15.21627 -15.01186 -14.72690 -14.48621 -14.34957 -14.02177 -13.91621 -13.88382 -13.49874 -13.24554 -13.16070 -13.00311 -12.88285 -12.79790 -12.56804 -12.40526 -12.28390 -12.11772 -11.93508 -11.85206 -11.39496 -11.21872 -11.10178 -10.95751 -10.89057 -10.54169 -10.12941 -9.67775 -8.97110 -7.94770 -5.22134 0.71573 1.08333 1.46571 1.47683 1.52308 1.54217 1.56183 2.07256 2.34062 2.54546 2.89547 3.38377 3.43798 3.59542 3.76910 3.83707 3.87763 3.96394 3.98866 4.09033 4.11423 4.25497 4.27510 4.32774 4.40634 4.48187 4.53680 4.64211 4.64535 4.68202 4.82198 4.83546 4.94010 4.94733 4.98382 5.07210 5.09117 5.18894 5.26753 5.33231 5.37627 5.41510 5.49325 5.68483 6.27884 6.45730 6.62383 6.92413 7.14072 7.35053 8.10839 8.37053 9.28452 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011614 B = 0.002122 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.353837 B =13193.541067 C =14917.840123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.559 5.559 3 C 0.280 3.720 4 N -0.318 5.318 5 N -0.458 5.458 6 C 0.180 3.820 7 C -0.144 4.144 8 C 0.519 3.481 9 O -0.581 6.581 10 N -0.717 5.717 11 C 0.134 3.866 12 C -0.079 4.079 13 C -0.140 4.140 14 C 0.188 3.812 15 N -0.735 5.735 16 C -0.246 4.246 17 H 0.069 0.931 18 C -0.072 4.072 19 N -0.965 5.965 20 Si 0.970 3.030 21 H -0.287 1.287 22 H -0.293 1.293 23 H -0.274 1.274 24 C -0.164 4.164 25 C -0.152 4.152 26 C 0.625 3.375 27 O -0.599 6.599 28 H 0.084 0.916 29 H 0.132 0.868 30 H 0.072 0.928 31 H 0.289 0.711 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.414 0.586 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.016 0.984 42 H 0.014 0.986 43 H 0.377 0.623 44 H 0.251 0.749 45 H 0.107 0.893 46 H 0.083 0.917 47 H 0.097 0.903 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.780 2.357 12.074 27.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.286 5.286 3 C -0.017 4.017 4 N -0.139 5.139 5 N -0.278 5.278 6 C 0.058 3.942 7 C -0.185 4.185 8 C 0.306 3.694 9 O -0.461 6.461 10 N -0.369 5.369 11 C 0.010 3.990 12 C -0.116 4.116 13 C -0.141 4.141 14 C 0.061 3.939 15 N -0.378 5.378 16 C -0.378 4.378 17 H 0.087 0.913 18 C -0.264 4.264 19 N -0.616 5.616 20 Si 0.799 3.201 21 H -0.214 1.214 22 H -0.219 1.219 23 H -0.199 1.199 24 C -0.201 4.201 25 C -0.189 4.189 26 C 0.324 3.676 27 O -0.476 6.476 28 H 0.103 0.897 29 H 0.150 0.850 30 H 0.091 0.909 31 H 0.304 0.696 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.250 0.750 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.034 0.966 42 H 0.032 0.968 43 H 0.210 0.790 44 H 0.060 0.940 45 H 0.126 0.874 46 H 0.102 0.898 47 H 0.115 0.885 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -23.519 1.630 12.899 26.873 hybrid contribution 0.008 0.529 -0.871 1.019 sum -23.511 2.159 12.027 26.497 Atomic orbital electron populations 1.22178 0.71764 1.06145 1.04810 1.46198 1.10239 1.05914 1.66254 1.27154 0.84375 0.96141 0.94076 1.77095 1.20453 0.90536 1.25841 1.49025 1.05870 1.04170 1.68715 1.21020 0.83583 0.93246 0.96370 1.21908 0.95871 1.01487 0.99211 1.20661 0.85224 0.80093 0.83433 1.90703 1.64859 1.58127 1.32446 1.45969 1.29623 1.52275 1.09018 1.21181 0.86141 0.94215 0.97432 1.21114 0.94899 1.00551 0.95076 1.21411 0.95211 0.89606 1.07917 1.20227 0.93567 0.89288 0.90786 1.42442 1.31515 1.33075 1.30774 1.19594 1.04051 1.06007 1.08105 0.91257 1.25488 1.01270 1.01807 0.97884 1.69795 1.36888 1.38003 1.16868 0.85194 0.78761 0.78519 0.77615 1.21431 1.21915 1.19871 1.23055 1.03283 1.00001 0.93738 1.23047 1.04050 0.96577 0.95234 1.17131 0.82826 0.85561 0.82049 1.91048 1.78527 1.17245 1.60809 0.89710 0.84987 0.90937 0.69612 0.89338 0.88106 0.86606 0.87435 0.74983 0.93822 0.90952 0.89354 0.92114 0.96586 0.96810 0.78997 0.93978 0.87421 0.89845 0.88469 0.86930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.38 11.05 127.77 1.41 1.79 16 2 N -0.56 -7.04 3.14 -683.69 -2.15 -9.19 16 3 C 0.28 2.27 12.66 179.82 2.28 4.54 16 4 N -0.32 -5.54 12.53 -59.42 -0.74 -6.29 16 5 N -0.46 -10.21 3.63 -478.01 -1.73 -11.95 16 6 C 0.18 4.19 5.68 86.38 0.49 4.68 16 7 C -0.14 -3.03 6.02 29.85 0.18 -2.85 16 8 C 0.52 14.11 7.83 87.66 0.69 14.80 16 9 O -0.58 -20.15 15.98 -3.04 -0.05 -20.20 16 10 N -0.72 -18.13 5.56 -463.06 -2.57 -20.70 16 11 C 0.13 3.85 5.49 86.38 0.47 4.32 16 12 C -0.08 -2.28 5.20 30.59 0.16 -2.12 16 13 C -0.14 -4.43 1.65 -52.18 -0.09 -4.51 16 14 C 0.19 7.75 6.15 86.38 0.53 8.28 16 15 N -0.74 -37.51 5.23 -343.44 -1.80 -39.30 16 16 C -0.25 -13.94 9.99 84.03 0.84 -13.10 16 17 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 18 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 19 N -0.96 -58.52 13.06 21.65 0.28 -58.24 16 20 Si 0.97 46.58 29.55 68.60 2.03 48.61 16 21 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 22 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 23 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 24 C -0.16 -4.50 9.87 30.59 0.30 -4.20 16 25 C -0.15 -3.75 9.57 30.59 0.29 -3.46 16 26 C 0.63 14.63 8.60 178.99 1.54 16.17 16 27 O -0.60 -18.69 17.71 -4.71 -0.08 -18.78 16 28 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.13 -0.57 8.14 -2.39 -0.02 -0.59 16 30 H 0.07 0.57 8.08 -2.39 -0.02 0.56 16 31 H 0.29 -1.53 8.06 -2.91 -0.02 -1.55 16 32 H 0.09 2.29 8.07 -2.39 -0.02 2.28 16 33 H 0.10 2.39 8.10 -2.39 -0.02 2.37 16 34 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.41 8.41 8.47 -92.71 -0.79 7.63 16 37 H 0.04 1.52 7.96 -2.39 -0.02 1.50 16 38 H 0.07 1.97 7.72 -2.39 -0.02 1.95 16 39 H 0.09 2.09 7.93 -2.39 -0.02 2.07 16 40 H 0.06 2.14 6.94 -2.38 -0.02 2.12 16 41 H 0.02 0.70 7.96 -2.39 -0.02 0.68 16 42 H 0.01 0.59 8.10 -2.39 -0.02 0.57 16 43 H 0.38 20.12 6.80 -92.71 -0.63 19.49 16 44 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 45 H 0.11 2.55 8.07 -2.39 -0.02 2.54 16 46 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 47 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 48 H 0.11 2.33 7.90 -2.38 -0.02 2.31 16 Total: -1.00 -84.84 408.11 2.31 -82.53 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: -0.44 Total: 32.85 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: 9.56 Total: 20.65 kcal Atomic # 7 Polarization: -136.95 SS G_CDS: -8.71 Total: -145.66 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -0.13 Total: -38.98 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -84.84 2.31 -82.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166371933.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.145 kcal (2) G-P(sol) polarization free energy of solvation -84.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds