Wall clock time and date at job start Tue Mar 31 2020 21:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40440 * 126.82817 * 2 1 4 4 C 1.30710 * 106.79729 * 180.02562 * 3 2 1 5 5 N 1.33241 * 108.94545 * 359.97438 * 4 3 2 6 6 C 1.30832 * 109.82939 * 0.02562 * 5 4 3 7 7 C 1.50694 * 125.96061 * 179.97438 * 6 5 4 8 8 O 1.42898 * 109.47504 * 90.02284 * 7 6 5 9 9 C 1.42903 * 114.00329 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.46873 * 180.02562 * 9 8 7 11 11 O 1.21278 * 120.00146 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99771 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00234 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47408 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.47282 * 175.45867 * 14 13 12 16 16 C 1.52997 * 115.54908 * 279.32720 * 15 14 13 17 17 N 1.46492 * 109.47312 * 294.95050 * 16 15 14 18 18 C 1.36943 * 119.99995 * 174.37414 * 17 16 15 19 19 H 1.08003 * 119.99763 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99912 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00286 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99732 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47066 * 60.00615 * 22 20 18 24 24 H 1.48512 * 109.47002 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47485 * 300.00099 * 22 20 18 26 26 C 1.52999 * 117.49596 * 133.61959 * 15 14 13 27 27 C 1.52999 * 117.49467 * 64.99904 * 15 14 13 28 28 H 1.08996 * 109.47052 * 270.00043 * 1 2 3 29 29 H 1.09006 * 109.47024 * 29.99991 * 1 2 3 30 30 H 1.09001 * 109.47570 * 150.00181 * 1 2 3 31 31 H 1.07998 * 125.52653 * 180.26580 * 4 3 2 32 32 H 1.09006 * 109.47072 * 210.02502 * 7 6 5 33 33 H 1.08997 * 109.47344 * 330.02178 * 7 6 5 34 34 H 1.08998 * 109.47080 * 299.99602 * 9 8 7 35 35 H 1.08993 * 109.47056 * 60.00191 * 9 8 7 36 36 H 0.97005 * 120.00424 * 0.02562 * 12 10 9 37 37 H 1.08995 * 109.47379 * 300.01122 * 13 12 10 38 38 H 1.09005 * 109.46214 * 60.00537 * 13 12 10 39 39 H 1.09003 * 109.47699 * 295.46046 * 14 13 12 40 40 H 1.09003 * 109.47080 * 55.45919 * 14 13 12 41 41 H 1.09000 * 109.47162 * 54.95216 * 16 15 14 42 42 H 1.09004 * 109.46530 * 174.94548 * 16 15 14 43 43 H 0.97002 * 120.00022 * 354.37213 * 17 16 15 44 44 H 0.97000 * 119.99706 * 179.97438 * 21 20 18 45 45 H 1.08998 * 117.50144 * 359.97438 * 26 15 14 46 46 H 1.09000 * 117.49566 * 145.02210 * 26 15 14 47 47 H 1.09001 * 117.49942 * 214.97718 * 27 15 14 48 48 H 1.09003 * 117.49977 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1241 0.0000 4 6 3.5348 0.6764 -0.0006 5 7 3.5096 -0.6557 -0.0003 6 6 2.2707 -1.0762 -0.0002 7 6 1.8246 -2.5156 -0.0005 8 8 1.6834 -2.9708 1.3466 9 6 1.2612 -4.3314 1.4592 10 6 1.1453 -4.7026 2.9152 11 8 1.3989 -3.8826 3.7721 12 7 0.7590 -5.9454 3.2651 13 6 0.6469 -6.3065 4.6805 14 6 0.1948 -7.7632 4.8010 15 6 0.1867 -8.1745 6.2747 16 6 1.5472 -8.5578 6.8602 17 7 2.0403 -9.7680 6.1981 18 6 3.2965 -10.2371 6.4762 19 1 3.9234 -9.7151 7.1839 20 6 3.7635 -11.3841 5.8492 21 7 2.9993 -12.0205 4.9871 22 14 5.4773 -12.0235 6.2280 23 1 5.5791 -12.3393 7.6754 24 1 5.7341 -13.2519 5.4337 25 1 6.4814 -10.9878 5.8754 26 6 -1.0423 -8.9246 6.7920 27 6 -0.8070 -7.4688 7.1996 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 4.4255 1.2872 0.0034 32 1 0.8670 -2.5991 -0.5146 33 1 2.5672 -3.1260 -0.5143 34 1 0.2918 -4.4522 0.9757 35 1 1.9918 -4.9797 0.9756 36 1 0.5558 -6.6012 2.5798 37 1 1.6163 -6.1861 5.1641 38 1 -0.0835 -5.6578 5.1641 39 1 -0.8091 -7.8673 4.3892 40 1 0.8822 -8.4039 4.2487 41 1 2.2537 -7.7432 6.7013 42 1 1.4430 -8.7451 7.9290 43 1 1.4770 -10.2370 5.5628 44 1 3.3258 -12.8218 4.5487 45 1 -1.8453 -9.1247 6.0826 46 1 -0.8818 -9.6916 7.5496 47 1 -0.4917 -7.2780 8.2254 48 1 -1.4547 -6.7112 6.7582 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167570305.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:33 Heat of formation + Delta-G solvation = 51.181440 kcal Electronic energy + Delta-G solvation = -27979.240629 eV Core-core repulsion = 23879.987561 eV Total energy + Delta-G solvation = -4099.253068 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.47805 -39.92526 -38.45491 -37.84792 -34.86533 -34.48841 -33.92050 -32.41699 -30.81969 -30.56261 -28.77850 -27.69237 -26.53359 -25.87510 -23.32425 -22.75135 -22.40531 -21.78673 -21.11565 -20.71477 -18.64127 -17.78844 -17.48416 -17.13323 -16.99744 -16.61426 -16.19648 -15.61628 -15.44561 -15.26278 -14.97470 -14.73759 -14.42012 -14.18209 -13.79404 -13.62406 -13.53709 -13.42612 -13.10802 -12.77740 -12.62898 -12.47137 -12.23521 -11.99255 -11.93073 -11.47111 -11.14955 -10.96894 -10.82342 -10.61938 -10.40419 -10.30650 -10.18745 -10.14241 -10.05797 -9.91928 -9.85864 -9.65296 -9.34046 -9.07871 -8.84781 -6.90585 -5.76438 -3.04206 1.04824 1.85530 2.35971 2.51634 2.80867 3.43779 3.44963 3.49117 3.50228 3.95818 4.02221 4.04793 4.23253 4.51298 4.53354 4.61657 4.66184 4.70008 4.75374 4.84897 4.94522 4.99454 5.07136 5.08524 5.13369 5.29286 5.50732 5.58036 5.65467 5.72943 5.86227 5.89666 6.04924 6.13351 6.16594 6.21298 6.27611 6.35074 6.41447 6.44409 6.45790 6.54568 6.75783 6.83757 7.40776 7.70394 7.70612 8.13676 8.42920 9.54542 10.12492 10.48391 11.46303 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012804 B = 0.001927 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.356018 B =14523.918698 C =16006.493179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.368 5.368 3 N -0.316 5.316 4 C 0.201 3.799 5 N -0.523 5.523 6 C 0.279 3.721 7 C 0.141 3.859 8 O -0.354 6.354 9 C 0.045 3.955 10 C 0.512 3.488 11 O -0.520 6.520 12 N -0.724 5.724 13 C 0.126 3.874 14 C -0.090 4.090 15 C -0.119 4.119 16 C 0.187 3.813 17 N -0.727 5.727 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.164 4.164 27 C -0.178 4.178 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.221 0.779 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.401 0.599 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.088 0.912 41 H 0.027 0.973 42 H 0.017 0.983 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.092 0.908 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.415 19.718 -13.435 26.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.160 5.160 3 N -0.144 5.144 4 C -0.102 4.102 5 N -0.252 5.252 6 C 0.002 3.998 7 C 0.062 3.938 8 O -0.271 6.271 9 C -0.035 4.035 10 C 0.296 3.704 11 O -0.394 6.394 12 N -0.378 5.378 13 C 0.004 3.996 14 C -0.128 4.128 15 C -0.120 4.120 16 C 0.059 3.941 17 N -0.371 5.371 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.201 4.201 27 C -0.215 4.215 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.238 0.762 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.235 0.765 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.045 0.955 42 H 0.035 0.965 43 H 0.218 0.782 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.114 0.886 47 H 0.111 0.889 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.023 20.968 -12.558 26.812 hybrid contribution 0.475 -1.170 -0.512 1.362 sum -10.548 19.799 -13.069 25.963 Atomic orbital electron populations 1.22024 0.73502 1.04805 1.04515 1.50262 1.08191 1.03909 1.53649 1.78066 1.02239 1.07944 1.26184 1.26022 0.95841 0.90225 0.98092 1.70472 1.19396 1.11723 1.23601 1.23690 0.86441 0.91621 0.98039 1.20658 1.01203 0.86350 0.85606 1.88084 1.88973 1.26323 1.23710 1.22291 1.01263 0.84388 0.95601 1.20061 0.77685 0.82479 0.90195 1.90761 1.47694 1.49331 1.51648 1.45903 1.69626 1.12668 1.09585 1.21387 1.02370 0.95766 0.80108 1.21254 1.01663 0.94619 0.95290 1.21565 0.92973 1.03871 0.93635 1.20187 0.89455 0.90093 0.94319 1.42280 1.16131 1.27349 1.51370 1.19195 0.91474 1.06304 1.19893 0.91318 1.24711 0.98371 0.98283 0.99625 1.69649 1.36481 1.20558 1.31621 0.86279 0.84373 0.78078 0.77538 1.21317 1.21724 1.21277 1.22965 0.98969 0.94634 1.03568 1.22977 1.02957 0.95480 1.00121 0.89588 0.88712 0.88976 0.76249 0.90587 0.88729 0.89824 0.89266 0.76455 0.90801 0.91667 0.91926 0.89351 0.95521 0.96548 0.78170 0.93558 0.89325 0.88583 0.88929 0.89269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 11.33 59.85 0.68 1.15 16 2 N -0.37 -3.56 4.04 -65.10 -0.26 -3.83 16 3 N -0.32 -3.55 12.70 29.29 0.37 -3.18 16 4 C 0.20 2.12 13.03 -91.82 -1.20 0.92 16 5 N -0.52 -6.43 11.19 -11.97 -0.13 -6.56 16 6 C 0.28 2.93 7.61 -155.69 -1.19 1.74 16 7 C 0.14 1.04 6.26 36.00 0.23 1.27 16 8 O -0.35 -3.86 9.86 -55.14 -0.54 -4.40 16 9 C 0.04 0.36 6.42 36.01 0.23 0.59 16 10 C 0.51 6.46 7.91 -10.98 -0.09 6.37 16 11 O -0.52 -9.26 16.50 -14.35 -0.24 -9.50 16 12 N -0.72 -8.03 5.56 -60.30 -0.33 -8.36 16 13 C 0.13 1.69 5.51 -4.04 -0.02 1.67 16 14 C -0.09 -1.23 5.24 -26.73 -0.14 -1.37 16 15 C -0.12 -1.85 1.52 -154.51 -0.23 -2.08 16 16 C 0.19 3.73 6.10 -4.05 -0.02 3.71 16 17 N -0.73 -17.93 5.30 -59.91 -0.32 -18.25 16 18 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 19 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 22 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C -0.16 -2.33 9.90 -26.73 -0.26 -2.60 16 27 C -0.18 -2.31 9.57 -26.73 -0.26 -2.56 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.20 7.11 -51.93 -0.37 -0.17 16 31 H 0.22 1.44 8.06 -52.49 -0.42 1.01 16 32 H 0.08 0.26 7.13 -51.93 -0.37 -0.11 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.40 3.22 8.47 -40.82 -0.35 2.87 16 37 H 0.07 1.19 7.69 -51.93 -0.40 0.79 16 38 H 0.07 0.86 7.80 -51.93 -0.41 0.45 16 39 H 0.06 0.72 7.94 -51.93 -0.41 0.30 16 40 H 0.09 1.41 7.64 -51.93 -0.40 1.01 16 41 H 0.03 0.55 7.69 -51.93 -0.40 0.15 16 42 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16 43 H 0.38 9.88 7.46 -40.82 -0.30 9.57 16 44 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.09 1.12 8.08 -51.93 -0.42 0.70 16 46 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 47 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 48 H 0.09 1.01 7.98 -51.93 -0.41 0.60 16 LS Contribution 409.20 15.07 6.17 6.17 Total: -1.00 -38.73 409.20 -9.70 -48.42 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -7.58 Total: 7.54 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -2.52 Total: 1.56 kcal Atomic # 7 Polarization: -67.20 SS G_CDS: 0.05 Total: -67.15 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.78 Total: -13.90 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -38.73 -9.70 -48.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167570305.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.603 kcal (2) G-P(sol) polarization free energy of solvation -38.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds