Wall clock time and date at job start Tue Mar 31 2020 21:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40440 * 126.82817 * 2 1 4 4 C 1.30710 * 106.79729 * 180.02562 * 3 2 1 5 5 N 1.33241 * 108.94545 * 359.97438 * 4 3 2 6 6 C 1.30832 * 109.82939 * 0.02562 * 5 4 3 7 7 C 1.50694 * 125.96061 * 179.97438 * 6 5 4 8 8 O 1.42898 * 109.47504 * 90.02284 * 7 6 5 9 9 C 1.42903 * 114.00329 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.46873 * 180.02562 * 9 8 7 11 11 O 1.21278 * 120.00146 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99771 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00234 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47408 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.47282 * 175.45867 * 14 13 12 16 16 C 1.52997 * 115.54908 * 279.32720 * 15 14 13 17 17 N 1.46492 * 109.47312 * 294.95050 * 16 15 14 18 18 C 1.36943 * 119.99995 * 174.37414 * 17 16 15 19 19 H 1.08003 * 119.99763 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99912 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00286 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99732 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47066 * 60.00615 * 22 20 18 24 24 H 1.48512 * 109.47002 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47485 * 300.00099 * 22 20 18 26 26 C 1.52999 * 117.49596 * 133.61959 * 15 14 13 27 27 C 1.52999 * 117.49467 * 64.99904 * 15 14 13 28 28 H 1.08996 * 109.47052 * 270.00043 * 1 2 3 29 29 H 1.09006 * 109.47024 * 29.99991 * 1 2 3 30 30 H 1.09001 * 109.47570 * 150.00181 * 1 2 3 31 31 H 1.07998 * 125.52653 * 180.26580 * 4 3 2 32 32 H 1.09006 * 109.47072 * 210.02502 * 7 6 5 33 33 H 1.08997 * 109.47344 * 330.02178 * 7 6 5 34 34 H 1.08998 * 109.47080 * 299.99602 * 9 8 7 35 35 H 1.08993 * 109.47056 * 60.00191 * 9 8 7 36 36 H 0.97005 * 120.00424 * 0.02562 * 12 10 9 37 37 H 1.08995 * 109.47379 * 300.01122 * 13 12 10 38 38 H 1.09005 * 109.46214 * 60.00537 * 13 12 10 39 39 H 1.09003 * 109.47699 * 295.46046 * 14 13 12 40 40 H 1.09003 * 109.47080 * 55.45919 * 14 13 12 41 41 H 1.09000 * 109.47162 * 54.95216 * 16 15 14 42 42 H 1.09004 * 109.46530 * 174.94548 * 16 15 14 43 43 H 0.97002 * 120.00022 * 354.37213 * 17 16 15 44 44 H 0.97000 * 119.99706 * 179.97438 * 21 20 18 45 45 H 1.08998 * 117.50144 * 359.97438 * 26 15 14 46 46 H 1.09000 * 117.49566 * 145.02210 * 26 15 14 47 47 H 1.09001 * 117.49942 * 214.97718 * 27 15 14 48 48 H 1.09003 * 117.49977 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1241 0.0000 4 6 3.5348 0.6764 -0.0006 5 7 3.5096 -0.6557 -0.0003 6 6 2.2707 -1.0762 -0.0002 7 6 1.8246 -2.5156 -0.0005 8 8 1.6834 -2.9708 1.3466 9 6 1.2612 -4.3314 1.4592 10 6 1.1453 -4.7026 2.9152 11 8 1.3989 -3.8826 3.7721 12 7 0.7590 -5.9454 3.2651 13 6 0.6469 -6.3065 4.6805 14 6 0.1948 -7.7632 4.8010 15 6 0.1867 -8.1745 6.2747 16 6 1.5472 -8.5578 6.8602 17 7 2.0403 -9.7680 6.1981 18 6 3.2965 -10.2371 6.4762 19 1 3.9234 -9.7151 7.1839 20 6 3.7635 -11.3841 5.8492 21 7 2.9993 -12.0205 4.9871 22 14 5.4773 -12.0235 6.2280 23 1 5.5791 -12.3393 7.6754 24 1 5.7341 -13.2519 5.4337 25 1 6.4814 -10.9878 5.8754 26 6 -1.0423 -8.9246 6.7920 27 6 -0.8070 -7.4688 7.1996 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 4.4255 1.2872 0.0034 32 1 0.8670 -2.5991 -0.5146 33 1 2.5672 -3.1260 -0.5143 34 1 0.2918 -4.4522 0.9757 35 1 1.9918 -4.9797 0.9756 36 1 0.5558 -6.6012 2.5798 37 1 1.6163 -6.1861 5.1641 38 1 -0.0835 -5.6578 5.1641 39 1 -0.8091 -7.8673 4.3892 40 1 0.8822 -8.4039 4.2487 41 1 2.2537 -7.7432 6.7013 42 1 1.4430 -8.7451 7.9290 43 1 1.4770 -10.2370 5.5628 44 1 3.3258 -12.8218 4.5487 45 1 -1.8453 -9.1247 6.0826 46 1 -0.8818 -9.6916 7.5496 47 1 -0.4917 -7.2780 8.2254 48 1 -1.4547 -6.7112 6.7582 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167570305.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:32 Heat of formation + Delta-G solvation = 23.786531 kcal Electronic energy + Delta-G solvation = -27980.428561 eV Core-core repulsion = 23879.987561 eV Total energy + Delta-G solvation = -4100.441000 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.17962 -40.88013 -39.58876 -38.66360 -36.09698 -35.70361 -35.10387 -33.11948 -32.77073 -31.61366 -29.49472 -28.32484 -27.75854 -27.05639 -24.64565 -24.38072 -23.10985 -22.94288 -21.86659 -21.59373 -19.98830 -19.03686 -18.48696 -18.15244 -17.85032 -17.33258 -17.02473 -16.75992 -16.42103 -16.38691 -15.99588 -15.88069 -15.61148 -15.33656 -15.01126 -14.83215 -14.52492 -14.19950 -14.11018 -14.05079 -13.82282 -13.29420 -13.16407 -13.08539 -12.98601 -12.76369 -12.59863 -12.54208 -12.26949 -12.17053 -11.91927 -11.82123 -11.17366 -11.09225 -11.00563 -10.89334 -10.87064 -10.82384 -10.67893 -10.54132 -10.10462 -8.96446 -7.94029 -5.21294 0.34696 1.29146 1.47127 1.49224 1.55288 1.57956 1.64070 2.01698 2.54797 2.79513 2.91983 3.34630 3.38643 3.50683 3.67977 3.81506 3.85788 3.88598 3.99786 4.07875 4.11030 4.23350 4.26302 4.28063 4.34100 4.38231 4.44467 4.50727 4.56244 4.62966 4.66932 4.85344 4.95050 4.98728 5.09584 5.19672 5.19766 5.29430 5.35479 5.35509 5.40386 5.43584 5.49580 5.69489 5.86951 6.28595 6.56595 6.97994 7.24608 7.35963 8.11662 8.38505 9.28695 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012804 B = 0.001927 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.356018 B =14523.918698 C =16006.493179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.370 5.370 3 N -0.343 5.343 4 C 0.191 3.809 5 N -0.563 5.563 6 C 0.267 3.733 7 C 0.141 3.859 8 O -0.394 6.394 9 C 0.050 3.950 10 C 0.504 3.496 11 O -0.582 6.582 12 N -0.713 5.713 13 C 0.134 3.866 14 C -0.075 4.075 15 C -0.140 4.140 16 C 0.187 3.813 17 N -0.734 5.734 18 C -0.247 4.247 19 H 0.067 0.933 20 C -0.070 4.070 21 N -0.963 5.963 22 Si 0.968 3.032 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.281 1.281 26 C -0.162 4.162 27 C -0.153 4.153 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.127 0.873 31 H 0.246 0.754 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.134 0.866 35 H 0.113 0.887 36 H 0.419 0.581 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.015 0.985 42 H 0.010 0.990 43 H 0.378 0.622 44 H 0.252 0.748 45 H 0.111 0.889 46 H 0.078 0.922 47 H 0.092 0.908 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.229 19.721 -14.801 27.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.161 5.161 3 N -0.172 5.172 4 C -0.111 4.111 5 N -0.292 5.292 6 C -0.010 4.010 7 C 0.062 3.938 8 O -0.312 6.312 9 C -0.029 4.029 10 C 0.291 3.709 11 O -0.461 6.461 12 N -0.367 5.367 13 C 0.011 3.989 14 C -0.113 4.113 15 C -0.141 4.141 16 C 0.060 3.940 17 N -0.376 5.376 18 C -0.379 4.379 19 H 0.085 0.915 20 C -0.263 4.263 21 N -0.613 5.613 22 Si 0.798 3.202 23 H -0.207 1.207 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.199 4.199 27 C -0.190 4.190 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.145 0.855 31 H 0.262 0.738 32 H 0.140 0.860 33 H 0.124 0.876 34 H 0.151 0.849 35 H 0.131 0.869 36 H 0.256 0.744 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.033 0.967 42 H 0.028 0.972 43 H 0.211 0.789 44 H 0.061 0.939 45 H 0.130 0.870 46 H 0.097 0.903 47 H 0.111 0.889 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.875 20.966 -13.935 28.276 hybrid contribution 1.001 -1.135 -0.025 1.514 sum -11.875 19.830 -13.961 27.003 Atomic orbital electron populations 1.22415 0.71133 1.07120 1.05094 1.50559 1.09542 1.03296 1.52750 1.77979 1.02780 1.09375 1.27111 1.26590 0.96664 0.90249 0.97582 1.70452 1.21063 1.12622 1.25106 1.24326 0.86268 0.93102 0.97289 1.20978 1.03885 0.84422 0.84490 1.88017 1.89607 1.27631 1.25910 1.22425 1.04544 0.83728 0.92187 1.20998 0.76075 0.81858 0.91966 1.90732 1.50501 1.51098 1.53805 1.45789 1.68828 1.12926 1.09111 1.21146 1.00515 0.95848 0.81433 1.21100 1.02683 0.93771 0.93757 1.21426 0.91061 1.06451 0.95203 1.20232 0.92000 0.87926 0.93822 1.42397 1.15248 1.28560 1.51440 1.19539 0.92702 1.06302 1.19384 0.91476 1.25458 1.01961 0.98813 1.00025 1.69783 1.37984 1.20870 1.32695 0.85295 0.80258 0.77293 0.77398 1.20707 1.21766 1.20786 1.23012 0.98447 0.94999 1.03470 1.23057 1.01033 0.95346 0.99579 0.89783 0.87682 0.85502 0.73837 0.85997 0.87630 0.84896 0.86916 0.74395 0.94456 0.91074 0.88703 0.92014 0.96685 0.97201 0.78945 0.93938 0.87046 0.90333 0.88917 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 11.33 127.77 1.45 2.11 16 2 N -0.37 -6.78 4.04 -359.88 -1.45 -8.23 16 3 N -0.34 -7.71 12.70 -61.25 -0.78 -8.49 16 4 C 0.19 4.09 13.03 180.77 2.36 6.45 16 5 N -0.56 -13.85 11.19 -191.78 -2.15 -16.00 16 6 C 0.27 5.33 7.61 138.22 1.05 6.38 16 7 C 0.14 1.70 6.26 71.23 0.45 2.14 16 8 O -0.39 -7.81 9.86 -129.94 -1.28 -9.09 16 9 C 0.05 0.66 6.42 71.24 0.46 1.12 16 10 C 0.50 12.11 7.91 87.66 0.69 12.81 16 11 O -0.58 -21.06 16.50 16.01 0.26 -20.79 16 12 N -0.71 -14.67 5.56 -463.07 -2.57 -17.24 16 13 C 0.13 3.50 5.51 86.38 0.48 3.98 16 14 C -0.08 -1.95 5.24 30.59 0.16 -1.79 16 15 C -0.14 -4.22 1.52 -52.18 -0.08 -4.30 16 16 C 0.19 7.60 6.10 86.38 0.53 8.13 16 17 N -0.73 -36.89 5.30 -343.47 -1.82 -38.71 16 18 C -0.25 -13.94 9.99 84.03 0.84 -13.10 16 19 H 0.07 3.72 7.83 -2.91 -0.02 3.69 16 20 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 21 N -0.96 -57.62 13.06 21.65 0.28 -57.34 16 22 Si 0.97 46.31 29.55 68.60 2.03 48.33 16 23 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 26 C -0.16 -4.31 9.90 30.59 0.30 -4.00 16 27 C -0.15 -3.62 9.57 30.59 0.29 -3.32 16 28 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.13 0.07 7.11 -2.39 -0.02 0.06 16 31 H 0.25 3.26 8.06 -2.91 -0.02 3.23 16 32 H 0.12 0.27 7.13 -2.38 -0.02 0.26 16 33 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.42 5.62 8.47 -92.70 -0.79 4.84 16 37 H 0.04 1.24 7.69 -2.39 -0.02 1.22 16 38 H 0.07 1.78 7.80 -2.38 -0.02 1.76 16 39 H 0.09 1.86 7.94 -2.39 -0.02 1.84 16 40 H 0.06 1.95 7.64 -2.39 -0.02 1.93 16 41 H 0.02 0.65 7.69 -2.39 -0.02 0.63 16 42 H 0.01 0.42 8.09 -2.38 -0.02 0.40 16 43 H 0.38 19.77 7.46 -92.71 -0.69 19.08 16 44 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 45 H 0.11 2.45 8.08 -2.39 -0.02 2.43 16 46 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.12 2.18 7.98 -2.39 -0.02 2.16 16 Total: -1.00 -88.33 409.20 1.47 -86.86 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -0.49 Total: 27.64 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 9.44 Total: 13.06 kcal Atomic # 7 Polarization: -137.53 SS G_CDS: -8.49 Total: -146.02 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -1.02 Total: -29.88 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -88.33 1.47 -86.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167570305.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.651 kcal (2) G-P(sol) polarization free energy of solvation -88.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds