Wall clock time and date at job start Tue Mar 31 2020 20:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45198 * 109.47585 * 2 1 4 4 C 1.34227 * 117.00115 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99960 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99817 * 180.02562 * 4 3 2 7 7 N 1.46901 * 109.46940 * 174.85397 * 6 4 3 8 8 C 1.46903 * 110.99981 * 288.02480 * 7 6 4 9 9 C 1.50697 * 109.47303 * 160.73200 * 8 7 6 10 10 H 1.08004 * 119.99841 * 4.95438 * 9 8 7 11 11 C 1.37873 * 119.99962 * 184.95381 * 9 8 7 12 12 N 1.31519 * 120.00025 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00236 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47170 * 89.99922 * 13 11 9 15 15 H 1.48501 * 109.47411 * 209.99987 * 13 11 9 16 16 H 1.48501 * 109.46887 * 330.00058 * 13 11 9 17 17 C 1.46904 * 111.00257 * 164.07520 * 7 6 4 18 18 H 1.08993 * 109.47177 * 178.95259 * 17 7 6 19 19 C 1.52998 * 109.47143 * 58.94881 * 17 7 6 20 20 C 1.52999 * 109.46859 * 180.02562 * 19 17 7 21 21 C 1.52999 * 109.47303 * 60.00282 * 20 19 17 22 22 C 1.52998 * 109.46933 * 299.99673 * 21 20 19 23 23 H 1.09003 * 109.47451 * 300.00142 * 22 21 20 24 24 N 1.46502 * 109.47331 * 180.02562 * 22 21 20 25 25 N 1.28881 * 125.45095 * 119.99925 * 24 22 21 26 26 C 1.31038 * 107.91446 * 180.02562 * 25 24 22 27 27 N 1.33318 * 106.90611 * 0.02562 * 26 25 24 28 28 N 1.28786 * 125.44659 * 299.70051 * 24 22 21 29 29 C 1.53001 * 109.46438 * 298.95115 * 17 7 6 30 30 H 1.08997 * 109.47986 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47657 * 300.00460 * 1 2 3 32 32 H 1.09008 * 109.47002 * 60.00036 * 1 2 3 33 33 H 1.09007 * 109.46838 * 239.99563 * 2 1 3 34 34 H 1.08998 * 109.47067 * 120.00022 * 2 1 3 35 35 H 1.09004 * 109.47538 * 54.85274 * 6 4 3 36 36 H 1.09003 * 109.47218 * 294.84966 * 6 4 3 37 37 H 1.09007 * 109.47220 * 280.73109 * 8 7 6 38 38 H 1.09002 * 109.47105 * 40.73096 * 8 7 6 39 39 H 0.97002 * 120.00094 * 180.02562 * 12 11 9 40 40 H 1.08996 * 109.47393 * 60.00601 * 19 17 7 41 41 H 1.09006 * 109.47295 * 299.99923 * 19 17 7 42 42 H 1.09008 * 109.47075 * 180.02562 * 20 19 17 43 43 H 1.08993 * 109.47298 * 299.99666 * 20 19 17 44 44 H 1.09003 * 109.47168 * 59.99988 * 21 20 19 45 45 H 1.09003 * 109.47350 * 179.97438 * 21 20 19 46 46 H 1.08001 * 126.54769 * 179.97438 * 26 25 24 47 47 H 1.09006 * 109.47630 * 60.00303 * 29 17 7 48 48 H 1.08999 * 109.47303 * 299.99702 * 29 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5864 -0.0005 6 6 3.9208 2.9372 0.0000 7 7 5.3827 2.8623 0.1235 8 6 5.7763 2.4558 1.4792 9 6 7.1907 1.9361 1.4570 10 1 7.7695 1.9843 0.5464 11 6 7.7458 1.3992 2.5991 12 7 8.9803 0.9461 2.5799 13 14 6.7450 1.3165 4.1742 14 1 6.0081 0.0282 4.2255 15 1 7.6544 1.4135 5.3443 16 1 5.7768 2.4421 4.2051 17 6 6.0084 4.1391 -0.2457 18 1 7.0891 4.0617 -0.1276 19 6 5.4744 5.2498 0.6610 20 6 6.1256 6.5797 0.2760 21 6 5.7936 6.9072 -1.1812 22 6 6.3276 5.7965 -2.0879 23 1 7.4084 5.7193 -1.9700 24 7 6.0102 6.1103 -3.4833 25 7 6.8721 6.2709 -4.4280 26 6 6.2164 6.5389 -5.5305 27 7 4.9197 6.5361 -5.2208 28 7 4.8251 6.2645 -3.9633 29 6 5.6768 4.4668 -1.7030 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.5134 3.4987 0.8408 36 1 3.6602 3.4386 -0.9321 37 1 5.7152 3.3143 2.1481 38 1 5.1066 1.6717 1.8322 39 1 9.3708 0.5680 3.3834 40 1 5.7106 5.0164 1.6991 41 1 4.3935 5.3272 0.5428 42 1 5.7455 7.3709 0.9223 43 1 7.2064 6.5026 0.3939 44 1 4.7127 6.9843 -1.2991 45 1 6.2572 7.8548 -1.4554 46 1 6.6447 6.7271 -6.5039 47 1 4.5959 4.5443 -1.8212 48 1 6.0572 3.6756 -2.3490 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173766056.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:26 Heat of formation + Delta-G solvation = 51.507738 kcal Electronic energy + Delta-G solvation = -30513.438357 eV Core-core repulsion = 26414.199439 eV Total energy + Delta-G solvation = -4099.238918 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.36510 -40.29940 -39.35263 -36.73503 -35.75718 -34.04196 -32.99667 -32.54870 -31.73607 -30.51129 -29.54016 -28.85185 -25.78954 -24.86530 -23.92958 -23.18893 -22.36202 -22.21778 -21.13718 -20.53594 -19.04474 -17.82891 -17.32396 -17.06534 -16.83239 -16.39628 -15.96148 -15.72566 -15.39549 -14.86403 -14.45246 -14.31076 -13.96878 -13.95502 -13.75760 -13.37322 -13.33874 -12.90043 -12.68973 -12.66431 -12.50151 -12.38959 -12.22549 -11.81593 -11.55299 -11.52243 -11.37015 -11.28123 -11.01392 -11.00407 -10.86391 -10.72701 -10.65081 -10.52911 -10.36285 -10.30648 -10.12040 -9.98701 -9.87840 -9.32783 -8.57152 -7.60208 -6.06222 -4.02329 1.22655 1.86175 2.18826 2.65815 2.82555 3.25841 3.31893 3.34089 3.98047 4.20436 4.27370 4.39880 4.59584 4.67146 4.77839 4.90476 4.92315 4.94526 4.97879 5.03955 5.08938 5.25357 5.27937 5.29141 5.29770 5.44219 5.45777 5.56838 5.61300 5.64117 5.69962 5.73110 5.74119 5.82465 5.90154 5.92787 6.07421 6.09244 6.19117 6.25886 6.43276 6.70354 6.70944 6.80699 7.46425 7.68711 7.77203 8.23824 8.34998 8.59846 9.02343 9.55115 11.07103 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008379 B = 0.004192 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3340.790120 B = 6677.620594 C = 8975.025519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.370 6.370 4 C 0.451 3.549 5 O -0.466 6.466 6 C 0.055 3.945 7 N -0.503 5.503 8 C 0.162 3.838 9 C -0.499 4.499 10 H 0.081 0.919 11 C 0.071 3.929 12 N -0.899 5.899 13 Si 0.870 3.130 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.270 1.270 17 C 0.105 3.895 18 H 0.109 0.891 19 C -0.164 4.164 20 C -0.107 4.107 21 C -0.125 4.125 22 C 0.159 3.841 23 H 0.128 0.872 24 N -0.126 5.126 25 N -0.310 5.310 26 C 0.134 3.866 27 N -0.296 5.296 28 N -0.059 5.059 29 C -0.125 4.125 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.108 0.892 37 H -0.002 1.002 38 H 0.026 0.974 39 H 0.263 0.737 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.232 0.768 47 H 0.079 0.921 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.561 10.710 -7.982 17.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.289 6.289 4 C 0.290 3.710 5 O -0.349 6.349 6 C -0.075 4.075 7 N -0.227 5.227 8 C 0.037 3.963 9 C -0.537 4.537 10 H 0.099 0.901 11 C -0.131 4.131 12 N -0.538 5.538 13 Si 0.697 3.303 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.194 1.194 17 C -0.005 4.005 18 H 0.127 0.873 19 C -0.203 4.203 20 C -0.146 4.146 21 C -0.164 4.164 22 C 0.059 3.941 23 H 0.145 0.855 24 N -0.039 5.039 25 N -0.159 5.159 26 C -0.169 4.169 27 N -0.167 5.167 28 N -0.053 5.053 29 C -0.164 4.164 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.126 0.874 37 H 0.016 0.984 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.248 0.752 47 H 0.098 0.902 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.484 9.816 -7.728 16.970 hybrid contribution -0.251 0.225 0.931 0.990 sum -11.735 10.041 -6.797 16.874 Atomic orbital electron populations 1.21785 0.93004 1.02657 1.03274 1.22923 0.94912 0.80830 1.02589 1.86464 1.25382 1.31928 1.85083 1.23758 0.80088 0.93314 0.73802 1.90757 1.59745 1.42398 1.42015 1.21659 0.91965 0.90128 1.03705 1.61838 1.02355 1.27408 1.31066 1.20321 0.98372 0.94674 0.82952 1.20878 0.95317 1.39220 0.98268 0.90108 1.24833 0.94781 0.95040 0.98400 1.69880 1.13688 1.41387 1.28851 0.86957 0.80441 0.78977 0.83897 1.20247 1.21166 1.19444 1.21540 1.01690 0.86844 0.90403 0.87319 1.22410 1.00407 0.95096 1.02363 1.21405 1.02012 0.97822 0.93369 1.21961 1.02707 0.96468 0.95292 1.22090 1.03602 0.97570 0.70825 0.85455 1.50575 1.01391 1.40771 1.11141 1.74754 1.23295 1.20369 0.97509 1.27338 0.87817 1.02450 0.99298 1.75885 1.18706 1.18126 1.03938 1.78916 1.07607 1.14363 1.04391 1.22098 1.01563 0.93816 0.98948 0.90524 0.91651 0.91625 0.91408 0.91402 0.91334 0.87403 0.98437 0.95586 0.92692 0.89795 0.91838 0.90798 0.90709 0.90018 0.91052 0.75152 0.90221 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.29 37.15 0.38 -0.99 16 2 C 0.06 0.79 6.18 37.15 0.23 1.02 16 3 O -0.37 -5.65 10.22 -39.25 -0.40 -6.05 16 4 C 0.45 8.06 7.38 36.00 0.27 8.33 16 5 O -0.47 -10.31 15.06 -18.75 -0.28 -10.59 16 6 C 0.05 0.86 4.47 -4.98 -0.02 0.83 16 7 N -0.50 -9.44 4.01 -229.51 -0.92 -10.36 16 8 C 0.16 3.68 3.24 -4.98 -0.02 3.66 16 9 C -0.50 -13.62 9.22 -34.44 -0.32 -13.94 16 10 H 0.08 2.41 7.83 -52.48 -0.41 2.00 16 11 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 12 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 13 Si 0.87 21.23 27.37 -169.99 -4.65 16.58 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.27 -6.18 6.69 56.52 0.38 -5.81 16 17 C 0.10 1.57 2.14 -67.71 -0.14 1.43 16 18 H 0.11 1.87 7.35 -51.93 -0.38 1.49 16 19 C -0.16 -2.05 4.58 -26.73 -0.12 -2.17 16 20 C -0.11 -1.05 5.92 -26.73 -0.16 -1.21 16 21 C -0.13 -1.19 5.40 -26.73 -0.14 -1.34 16 22 C 0.16 1.79 3.11 -67.95 -0.21 1.57 16 23 H 0.13 1.37 8.14 -51.93 -0.42 0.94 16 24 N -0.13 -1.60 3.73 -4.97 -0.02 -1.61 16 25 N -0.31 -3.93 12.13 29.34 0.36 -3.57 16 26 C 0.13 1.48 13.26 -91.58 -1.21 0.26 16 27 N -0.30 -3.96 12.50 29.33 0.37 -3.59 16 28 N -0.06 -0.82 12.95 60.35 0.78 -0.03 16 29 C -0.13 -1.61 4.52 -26.75 -0.12 -1.73 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 33 H 0.07 0.87 8.13 -51.92 -0.42 0.45 16 34 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 35 H 0.07 0.97 7.14 -51.93 -0.37 0.60 16 36 H 0.11 1.42 5.67 -51.93 -0.29 1.12 16 37 H 0.00 -0.04 5.29 -51.92 -0.27 -0.31 16 38 H 0.03 0.64 5.72 -51.93 -0.30 0.34 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.08 1.22 6.25 -51.93 -0.32 0.89 16 41 H 0.06 0.71 6.76 -51.93 -0.35 0.36 16 42 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.23 1.43 8.06 -52.49 -0.42 1.01 16 47 H 0.08 0.98 6.12 -51.93 -0.32 0.66 16 48 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 382.09 15.07 5.76 5.76 Total: -1.00 -34.20 382.09 -7.19 -41.39 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -7.25 Total: 0.80 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -1.69 Total: -2.35 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 1.34 Total: -45.53 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.68 Total: -16.64 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.65 Total: 16.58 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.20 -7.19 -41.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173766056.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.894 kcal (2) G-P(sol) polarization free energy of solvation -34.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds