Wall clock time and date at job start Tue Mar 31 2020 20:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45198 * 109.47585 * 2 1 4 4 C 1.34227 * 117.00115 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99960 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99817 * 180.02562 * 4 3 2 7 7 N 1.46901 * 109.46940 * 174.85397 * 6 4 3 8 8 C 1.46903 * 110.99981 * 288.02480 * 7 6 4 9 9 C 1.50697 * 109.47303 * 160.73200 * 8 7 6 10 10 H 1.08004 * 119.99841 * 4.95438 * 9 8 7 11 11 C 1.37873 * 119.99962 * 184.95381 * 9 8 7 12 12 N 1.31519 * 120.00025 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00236 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47170 * 89.99922 * 13 11 9 15 15 H 1.48501 * 109.47411 * 209.99987 * 13 11 9 16 16 H 1.48501 * 109.46887 * 330.00058 * 13 11 9 17 17 C 1.46904 * 111.00257 * 164.07520 * 7 6 4 18 18 H 1.08993 * 109.47177 * 178.95259 * 17 7 6 19 19 C 1.52998 * 109.47143 * 58.94881 * 17 7 6 20 20 C 1.52999 * 109.46859 * 180.02562 * 19 17 7 21 21 C 1.52999 * 109.47303 * 60.00282 * 20 19 17 22 22 C 1.52998 * 109.46933 * 299.99673 * 21 20 19 23 23 H 1.09003 * 109.47451 * 300.00142 * 22 21 20 24 24 N 1.46502 * 109.47331 * 180.02562 * 22 21 20 25 25 N 1.28881 * 125.45095 * 119.99925 * 24 22 21 26 26 C 1.31038 * 107.91446 * 180.02562 * 25 24 22 27 27 N 1.33318 * 106.90611 * 0.02562 * 26 25 24 28 28 N 1.28786 * 125.44659 * 299.70051 * 24 22 21 29 29 C 1.53001 * 109.46438 * 298.95115 * 17 7 6 30 30 H 1.08997 * 109.47986 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47657 * 300.00460 * 1 2 3 32 32 H 1.09008 * 109.47002 * 60.00036 * 1 2 3 33 33 H 1.09007 * 109.46838 * 239.99563 * 2 1 3 34 34 H 1.08998 * 109.47067 * 120.00022 * 2 1 3 35 35 H 1.09004 * 109.47538 * 54.85274 * 6 4 3 36 36 H 1.09003 * 109.47218 * 294.84966 * 6 4 3 37 37 H 1.09007 * 109.47220 * 280.73109 * 8 7 6 38 38 H 1.09002 * 109.47105 * 40.73096 * 8 7 6 39 39 H 0.97002 * 120.00094 * 180.02562 * 12 11 9 40 40 H 1.08996 * 109.47393 * 60.00601 * 19 17 7 41 41 H 1.09006 * 109.47295 * 299.99923 * 19 17 7 42 42 H 1.09008 * 109.47075 * 180.02562 * 20 19 17 43 43 H 1.08993 * 109.47298 * 299.99666 * 20 19 17 44 44 H 1.09003 * 109.47168 * 59.99988 * 21 20 19 45 45 H 1.09003 * 109.47350 * 179.97438 * 21 20 19 46 46 H 1.08001 * 126.54769 * 179.97438 * 26 25 24 47 47 H 1.09006 * 109.47630 * 60.00303 * 29 17 7 48 48 H 1.08999 * 109.47303 * 299.99702 * 29 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5864 -0.0005 6 6 3.9208 2.9372 0.0000 7 7 5.3827 2.8623 0.1235 8 6 5.7763 2.4558 1.4792 9 6 7.1907 1.9361 1.4570 10 1 7.7695 1.9843 0.5464 11 6 7.7458 1.3992 2.5991 12 7 8.9803 0.9461 2.5799 13 14 6.7450 1.3165 4.1742 14 1 6.0081 0.0282 4.2255 15 1 7.6544 1.4135 5.3443 16 1 5.7768 2.4421 4.2051 17 6 6.0084 4.1391 -0.2457 18 1 7.0891 4.0617 -0.1276 19 6 5.4744 5.2498 0.6610 20 6 6.1256 6.5797 0.2760 21 6 5.7936 6.9072 -1.1812 22 6 6.3276 5.7965 -2.0879 23 1 7.4084 5.7193 -1.9700 24 7 6.0102 6.1103 -3.4833 25 7 6.8721 6.2709 -4.4280 26 6 6.2164 6.5389 -5.5305 27 7 4.9197 6.5361 -5.2208 28 7 4.8251 6.2645 -3.9633 29 6 5.6768 4.4668 -1.7030 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.5134 3.4987 0.8408 36 1 3.6602 3.4386 -0.9321 37 1 5.7152 3.3143 2.1481 38 1 5.1066 1.6717 1.8322 39 1 9.3708 0.5680 3.3834 40 1 5.7106 5.0164 1.6991 41 1 4.3935 5.3272 0.5428 42 1 5.7455 7.3709 0.9223 43 1 7.2064 6.5026 0.3939 44 1 4.7127 6.9843 -1.2991 45 1 6.2572 7.8548 -1.4554 46 1 6.6447 6.7271 -6.5039 47 1 4.5959 4.5443 -1.8212 48 1 6.0572 3.6756 -2.3490 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173766056.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:25 Heat of formation + Delta-G solvation = 28.589372 kcal Electronic energy + Delta-G solvation = -30514.432172 eV Core-core repulsion = 26414.199439 eV Total energy + Delta-G solvation = -4100.232733 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.30840 -41.63769 -40.50604 -37.97366 -37.09685 -35.13660 -34.56809 -33.92884 -32.71727 -31.61615 -30.62534 -30.47954 -27.30981 -25.86918 -24.85158 -24.21675 -23.92367 -23.17701 -22.42797 -21.68022 -20.25967 -19.07588 -18.82800 -18.45295 -18.02611 -17.69275 -17.28712 -16.66358 -16.50434 -16.38221 -15.76452 -15.52171 -15.22638 -15.16212 -14.76359 -14.63558 -14.61065 -14.34601 -13.97348 -13.64661 -13.59603 -13.54294 -13.27777 -13.22410 -12.84753 -12.58784 -12.53268 -12.48856 -12.31888 -12.23334 -11.98378 -11.95043 -11.84226 -11.76246 -11.62684 -11.56102 -11.51344 -11.39551 -11.29332 -11.09349 -10.74477 -9.03305 -8.25447 -6.25680 0.25254 0.93934 1.26675 1.30001 1.30791 1.33850 1.41786 1.61868 2.33926 2.93613 3.10079 3.18292 3.45903 3.60094 3.69204 3.72704 3.84452 3.95861 3.97525 4.00016 4.10077 4.11790 4.21876 4.25767 4.31059 4.34349 4.46681 4.55241 4.65705 4.74370 4.76096 4.84758 4.85815 4.92036 4.92629 4.98048 5.01101 5.11777 5.14110 5.19788 5.24764 5.38663 5.43266 5.47355 5.59379 5.90909 6.27103 6.54513 6.78371 6.89692 7.35517 7.40347 8.91630 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008379 B = 0.004192 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3340.790120 B = 6677.620594 C = 8975.025519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 O -0.362 6.362 4 C 0.451 3.549 5 O -0.520 6.520 6 C 0.057 3.943 7 N -0.530 5.530 8 C 0.177 3.823 9 C -0.498 4.498 10 H 0.037 0.963 11 C 0.009 3.991 12 N -0.949 5.949 13 Si 0.935 3.065 14 H -0.282 1.282 15 H -0.279 1.279 16 H -0.240 1.240 17 C 0.107 3.893 18 H 0.075 0.925 19 C -0.158 4.158 20 C -0.100 4.100 21 C -0.114 4.114 22 C 0.160 3.840 23 H 0.127 0.873 24 N -0.126 5.126 25 N -0.330 5.330 26 C 0.144 3.856 27 N -0.316 5.316 28 N -0.072 5.072 29 C -0.111 4.111 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.138 0.862 37 H 0.015 0.985 38 H 0.011 0.989 39 H 0.264 0.736 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.273 0.727 47 H 0.091 0.909 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.318 13.080 -7.858 20.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 O -0.279 6.279 4 C 0.294 3.706 5 O -0.407 6.407 6 C -0.072 4.072 7 N -0.254 5.254 8 C 0.051 3.949 9 C -0.537 4.537 10 H 0.055 0.945 11 C -0.187 4.187 12 N -0.591 5.591 13 Si 0.760 3.240 14 H -0.208 1.208 15 H -0.205 1.205 16 H -0.164 1.164 17 C -0.001 4.001 18 H 0.094 0.906 19 C -0.196 4.196 20 C -0.139 4.139 21 C -0.153 4.153 22 C 0.060 3.940 23 H 0.145 0.855 24 N -0.040 5.040 25 N -0.180 5.180 26 C -0.159 4.159 27 N -0.187 5.187 28 N -0.065 5.065 29 C -0.150 4.150 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.155 0.845 37 H 0.033 0.967 38 H 0.029 0.971 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.116 0.884 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.102 0.898 46 H 0.288 0.712 47 H 0.110 0.890 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.284 12.228 -7.623 20.290 hybrid contribution 0.626 -0.566 0.720 1.109 sum -13.658 11.662 -6.903 19.240 Atomic orbital electron populations 1.21795 0.89645 1.04356 1.03947 1.23242 0.97482 0.79620 1.01921 1.86470 1.23823 1.33333 1.84288 1.24263 0.80560 0.93598 0.72205 1.90742 1.61063 1.44124 1.44756 1.21798 0.89758 0.89394 1.06222 1.61544 1.04868 1.30180 1.28809 1.19965 0.94830 0.94494 0.85638 1.21149 0.97432 1.38578 0.96501 0.94508 1.25723 0.95819 0.94888 1.02308 1.70044 1.15792 1.43235 1.30001 0.85899 0.79299 0.79523 0.79327 1.20841 1.20462 1.16361 1.21456 0.99736 0.86494 0.92459 0.90634 1.22331 1.01806 0.95213 1.00295 1.21367 1.01639 0.96883 0.93963 1.21909 1.03101 0.96025 0.94280 1.22121 1.03598 0.97346 0.70945 0.85485 1.50641 1.01260 1.40662 1.11391 1.74770 1.23838 1.21277 0.98097 1.28172 0.86977 1.00432 1.00299 1.75869 1.19919 1.18948 1.03917 1.78871 1.07968 1.14870 1.04828 1.21889 1.02184 0.94149 0.96822 0.88328 0.91062 0.90791 0.91890 0.92474 0.88595 0.84473 0.96746 0.97130 0.92683 0.91637 0.89646 0.88360 0.91194 0.89292 0.89766 0.71165 0.89019 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 10.29 71.98 0.74 -1.50 16 2 C 0.05 1.28 6.18 71.98 0.45 1.72 16 3 O -0.36 -10.54 10.22 -51.39 -0.53 -11.07 16 4 C 0.45 15.92 7.38 71.24 0.53 16.44 16 5 O -0.52 -23.58 15.06 21.95 0.33 -23.25 16 6 C 0.06 1.68 4.47 85.56 0.38 2.06 16 7 N -0.53 -19.99 4.01 -880.04 -3.53 -23.52 16 8 C 0.18 8.09 3.24 85.56 0.28 8.37 16 9 C -0.50 -28.42 9.22 25.60 0.24 -28.18 16 10 H 0.04 2.36 7.83 -2.91 -0.02 2.33 16 11 C 0.01 0.55 5.47 84.65 0.46 1.01 16 12 N -0.95 -59.74 13.96 21.45 0.30 -59.44 16 13 Si 0.94 44.19 27.37 68.60 1.88 46.07 16 14 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 15 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 16 H -0.24 -10.12 6.69 99.48 0.67 -9.46 16 17 C 0.11 3.22 2.14 44.91 0.10 3.32 16 18 H 0.08 2.76 7.35 -2.39 -0.02 2.74 16 19 C -0.16 -3.60 4.58 30.59 0.14 -3.46 16 20 C -0.10 -1.69 5.92 30.59 0.18 -1.51 16 21 C -0.11 -1.87 5.40 30.59 0.17 -1.70 16 22 C 0.16 3.41 3.11 44.98 0.14 3.55 16 23 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 24 N -0.13 -3.03 3.73 -169.63 -0.63 -3.66 16 25 N -0.33 -7.92 12.13 -61.09 -0.74 -8.66 16 26 C 0.14 2.87 13.26 180.69 2.40 5.26 16 27 N -0.32 -7.90 12.50 -61.11 -0.76 -8.67 16 28 N -0.07 -1.85 12.95 37.02 0.48 -1.38 16 29 C -0.11 -2.80 4.52 30.58 0.14 -2.66 16 30 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.06 1.62 8.13 -2.38 -0.02 1.60 16 34 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 35 H 0.10 2.38 7.14 -2.39 -0.02 2.36 16 36 H 0.14 3.24 5.67 -2.39 -0.01 3.23 16 37 H 0.02 0.63 5.29 -2.38 -0.01 0.62 16 38 H 0.01 0.52 5.72 -2.39 -0.01 0.51 16 39 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 40 H 0.07 1.77 6.25 -2.39 -0.01 1.76 16 41 H 0.09 1.59 6.76 -2.38 -0.02 1.58 16 42 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.27 2.55 8.06 -2.91 -0.02 2.52 16 47 H 0.09 2.07 6.12 -2.38 -0.01 2.06 16 48 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -78.79 382.09 4.05 -74.74 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.93 Total: 16.11 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 6.33 Total: 2.72 kcal Atomic # 7 Polarization: -100.44 SS G_CDS: -4.89 Total: -105.33 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.19 Total: -34.32 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.07 kcal Total: -78.79 4.05 -74.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173766056.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.328 kcal (2) G-P(sol) polarization free energy of solvation -78.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds