Wall clock time and date at job start Tue Mar 31 2020 20:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45200 * 109.47387 * 2 1 4 4 C 1.34224 * 117.00013 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99971 * 180.02562 * 4 3 2 7 7 N 1.46900 * 109.46942 * 175.83597 * 6 4 3 8 8 C 1.46901 * 111.00006 * 288.71405 * 7 6 4 9 9 C 1.50697 * 109.47452 * 293.72726 * 8 7 6 10 10 H 1.08008 * 119.99907 * 5.21477 * 9 8 7 11 11 C 1.37876 * 120.00278 * 185.22157 * 9 8 7 12 12 N 1.31513 * 120.00185 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99954 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47415 * 59.99975 * 13 11 9 15 15 H 1.48498 * 109.46994 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47092 * 299.99794 * 13 11 9 17 17 C 1.46896 * 110.99876 * 164.76490 * 7 6 4 18 18 H 1.09007 * 109.47273 * 63.95095 * 17 7 6 19 19 C 1.52999 * 109.47380 * 183.95012 * 17 7 6 20 20 C 1.53002 * 109.47472 * 179.97438 * 19 17 7 21 21 C 1.52991 * 109.47157 * 300.00473 * 20 19 17 22 22 C 1.52995 * 109.47665 * 59.99832 * 21 20 19 23 23 H 1.08995 * 109.47464 * 179.97438 * 22 21 20 24 24 N 1.46499 * 109.47040 * 59.99740 * 22 21 20 25 25 N 1.28878 * 125.44637 * 119.72538 * 24 22 21 26 26 C 1.31042 * 107.91764 * 179.89904 * 25 24 22 27 27 N 1.33317 * 106.89874 * 0.35263 * 26 25 24 28 28 N 1.28785 * 125.45090 * 300.02583 * 24 22 21 29 29 C 1.53004 * 109.47326 * 303.94980 * 17 7 6 30 30 H 1.09008 * 109.47079 * 300.00048 * 1 2 3 31 31 H 1.09000 * 109.47204 * 60.00058 * 1 2 3 32 32 H 1.09004 * 109.47468 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47066 * 240.00006 * 2 1 3 34 34 H 1.08999 * 109.46739 * 120.00201 * 2 1 3 35 35 H 1.08995 * 109.47237 * 55.83235 * 6 4 3 36 36 H 1.09000 * 109.46734 * 295.83415 * 6 4 3 37 37 H 1.09007 * 109.46740 * 53.71964 * 8 7 6 38 38 H 1.08999 * 109.47419 * 173.72285 * 8 7 6 39 39 H 0.96992 * 120.00198 * 180.02562 * 12 11 9 40 40 H 1.09007 * 109.46850 * 59.99824 * 19 17 7 41 41 H 1.09004 * 109.47205 * 300.00381 * 19 17 7 42 42 H 1.09005 * 109.46733 * 60.00642 * 20 19 17 43 43 H 1.08998 * 109.47210 * 179.97438 * 20 19 17 44 44 H 1.09005 * 109.47314 * 179.97438 * 21 20 19 45 45 H 1.09005 * 109.46875 * 299.99222 * 21 20 19 46 46 H 1.07995 * 126.55112 * 180.13863 * 26 25 24 47 47 H 1.09002 * 109.46867 * 60.00227 * 29 17 7 48 48 H 1.08997 * 109.46977 * 300.00344 * 29 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 7 5.3843 2.8617 0.1022 8 6 5.7978 2.4310 1.4444 9 6 5.4283 3.4922 2.4486 10 1 4.8614 4.3569 2.1366 11 6 5.8140 3.3592 3.7657 12 7 6.5039 2.3061 4.1457 13 14 5.3565 4.6750 5.0102 14 1 3.8783 4.7979 5.0800 15 1 5.8849 4.2981 6.3459 16 1 5.9422 5.9748 4.5944 17 6 6.0035 4.1457 -0.2526 18 1 5.7009 4.9063 0.4673 19 6 7.5265 4.0007 -0.2313 20 6 8.1714 5.3378 -0.6015 21 6 7.7181 5.7521 -2.0027 22 6 6.1952 5.8972 -2.0241 23 1 5.8723 6.1928 -3.0222 24 7 5.7885 6.9198 -1.0570 25 7 5.1524 8.0045 -1.3392 26 6 4.9648 8.6640 -0.2225 27 7 5.5186 7.9419 0.7517 28 7 6.0141 6.8811 0.2103 29 6 5.5503 4.5606 -1.6538 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 3.5260 3.4934 0.8514 36 1 3.6461 3.4445 -0.9238 37 1 5.2929 1.4989 1.6985 38 1 6.8766 2.2759 1.4601 39 1 6.7749 2.2124 5.0723 40 1 7.8291 3.2401 -0.9511 41 1 7.8494 3.7050 0.7669 42 1 7.8689 6.0986 0.1181 43 1 9.2564 5.2346 -0.5859 44 1 8.1772 6.7049 -2.2663 45 1 8.0207 4.9912 -2.7223 46 1 4.4610 9.6130 -0.1129 47 1 4.4653 4.6640 -1.6689 48 1 5.8529 3.8000 -2.3736 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173766059.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:37 Heat of formation + Delta-G solvation = 61.185546 kcal Electronic energy + Delta-G solvation = -31525.037170 eV Core-core repulsion = 27426.217913 eV Total energy + Delta-G solvation = -4098.819257 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.15830 -40.01519 -39.06028 -36.56863 -35.50474 -33.75770 -32.51388 -32.39676 -31.59633 -30.46518 -29.55973 -27.92120 -25.43528 -24.58551 -23.67143 -23.12546 -22.55084 -21.91139 -20.86434 -20.12410 -19.31230 -17.32032 -17.11737 -16.83854 -16.37866 -16.26437 -15.71173 -15.52881 -15.14952 -14.77096 -14.23700 -14.11392 -13.94043 -13.73830 -13.39916 -13.08660 -12.82489 -12.72108 -12.48127 -12.35820 -12.24093 -12.12105 -11.74773 -11.67456 -11.41694 -11.28585 -11.07060 -10.98631 -10.91274 -10.81628 -10.54101 -10.49203 -10.38049 -10.18061 -10.12702 -10.00932 -9.82906 -9.71241 -9.58698 -9.40849 -8.34013 -7.25817 -5.96947 -4.05815 1.48985 2.10437 2.46420 2.86340 3.05587 3.37840 3.40938 3.48782 4.14559 4.43167 4.49125 4.50608 4.60748 4.90913 5.02442 5.04196 5.10149 5.19950 5.25920 5.31168 5.35148 5.40584 5.41891 5.47381 5.59550 5.71682 5.76619 5.81462 5.85638 5.86213 5.90610 5.94912 6.01796 6.12791 6.16723 6.25545 6.42474 6.46677 6.60132 6.88820 6.92797 7.04794 7.21079 7.60748 7.90004 7.97830 8.15909 8.29455 8.45137 8.64848 9.02375 9.61450 11.08244 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008355 B = 0.005092 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3350.640362 B = 5497.501032 C = 6918.386368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.369 6.369 4 C 0.466 3.534 5 O -0.486 6.486 6 C 0.061 3.939 7 N -0.521 5.521 8 C 0.185 3.815 9 C -0.550 4.550 10 H 0.056 0.944 11 C 0.072 3.928 12 N -0.889 5.889 13 Si 0.881 3.119 14 H -0.279 1.279 15 H -0.288 1.288 16 H -0.269 1.269 17 C 0.083 3.917 18 H 0.085 0.915 19 C -0.101 4.101 20 C -0.131 4.131 21 C -0.127 4.127 22 C 0.161 3.839 23 H 0.120 0.880 24 N -0.132 5.132 25 N -0.324 5.324 26 C 0.132 3.868 27 N -0.297 5.297 28 N -0.027 5.027 29 C -0.136 4.136 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.036 0.964 38 H 0.044 0.956 39 H 0.262 0.738 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.097 0.903 46 H 0.229 0.771 47 H 0.070 0.930 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.496 5.470 -14.633 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.287 6.287 4 C 0.307 3.693 5 O -0.370 6.370 6 C -0.068 4.068 7 N -0.246 5.246 8 C 0.060 3.940 9 C -0.589 4.589 10 H 0.074 0.926 11 C -0.132 4.132 12 N -0.527 5.527 13 Si 0.709 3.291 14 H -0.205 1.205 15 H -0.214 1.214 16 H -0.194 1.194 17 C -0.026 4.026 18 H 0.103 0.897 19 C -0.139 4.139 20 C -0.169 4.169 21 C -0.166 4.166 22 C 0.060 3.940 23 H 0.138 0.862 24 N -0.045 5.045 25 N -0.173 5.173 26 C -0.171 4.171 27 N -0.167 5.167 28 N -0.020 5.020 29 C -0.175 4.175 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.115 0.885 46 H 0.245 0.755 47 H 0.089 0.911 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.710 4.147 -14.649 15.670 hybrid contribution -0.939 1.668 1.264 2.294 sum -4.649 5.815 -13.385 15.316 Atomic orbital electron populations 1.21784 0.93189 1.02496 1.03274 1.22880 0.94827 0.81116 1.02352 1.86481 1.25645 1.31630 1.84983 1.23790 0.79752 0.93251 0.72494 1.90629 1.59959 1.42853 1.43596 1.21527 0.92311 0.89748 1.03238 1.62330 1.02673 1.27044 1.32525 1.19893 0.97654 0.95685 0.80724 1.21621 1.36051 1.06991 0.94242 0.92640 1.24863 0.94704 0.95266 0.98318 1.69941 1.37509 1.27892 1.17360 0.86805 0.78845 0.82948 0.80525 1.20467 1.21396 1.19411 1.21697 0.95037 0.92588 0.93249 0.89746 1.21443 0.93673 0.95357 1.03410 1.21795 1.00226 0.99758 0.95155 1.21964 0.91225 1.02730 1.00689 1.22075 0.97359 0.84932 0.89591 0.86249 1.50581 1.33188 1.13972 1.06797 1.74620 1.16032 0.98204 1.28482 1.27269 1.02633 1.02838 0.84371 1.76040 1.12911 1.00549 1.27190 1.79174 1.15739 1.15431 0.91665 1.22237 1.00293 0.93761 1.01204 0.91549 0.91792 0.90647 0.91698 0.91380 0.89913 0.88833 0.94608 0.93834 0.92831 0.92200 0.89593 0.89829 0.91540 0.91428 0.88510 0.75481 0.91141 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.29 37.16 0.38 -1.18 16 2 C 0.06 0.88 6.19 37.16 0.23 1.11 16 3 O -0.37 -6.38 10.22 -39.24 -0.40 -6.78 16 4 C 0.47 9.20 7.55 36.01 0.27 9.48 16 5 O -0.49 -10.95 14.76 -18.75 -0.28 -11.22 16 6 C 0.06 1.16 5.25 -4.97 -0.03 1.13 16 7 N -0.52 -10.70 4.19 -229.52 -0.96 -11.67 16 8 C 0.19 4.73 4.39 -4.98 -0.02 4.71 16 9 C -0.55 -14.91 7.43 -34.44 -0.26 -15.17 16 10 H 0.06 1.51 5.92 -52.48 -0.31 1.20 16 11 C 0.07 2.02 5.46 -17.82 -0.10 1.93 16 12 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 13 Si 0.88 22.09 29.54 -169.99 -5.02 17.07 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 17 C 0.08 1.47 1.33 -67.71 -0.09 1.38 16 18 H 0.09 1.74 3.78 -51.93 -0.20 1.55 16 19 C -0.10 -1.72 4.97 -26.73 -0.13 -1.85 16 20 C -0.13 -1.84 5.64 -26.73 -0.15 -2.00 16 21 C -0.13 -1.36 5.64 -26.74 -0.15 -1.51 16 22 C 0.16 1.86 3.60 -67.96 -0.24 1.61 16 23 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 24 N -0.13 -1.92 3.73 -4.98 -0.02 -1.94 16 25 N -0.32 -4.47 12.13 29.34 0.36 -4.12 16 26 C 0.13 1.77 13.26 -91.58 -1.21 0.56 16 27 N -0.30 -5.18 12.50 29.33 0.37 -4.81 16 28 N -0.03 -0.48 7.37 60.35 0.44 -0.03 16 29 C -0.14 -1.79 4.61 -26.75 -0.12 -1.92 16 30 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 34 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 35 H 0.08 1.73 6.55 -51.93 -0.34 1.39 16 36 H 0.09 1.46 5.49 -51.93 -0.28 1.18 16 37 H 0.04 1.03 6.44 -51.93 -0.33 0.70 16 38 H 0.04 1.19 6.43 -51.93 -0.33 0.86 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.09 1.79 6.46 -51.93 -0.34 1.45 16 42 H 0.08 1.39 5.49 -51.93 -0.28 1.10 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.23 1.93 8.06 -52.49 -0.42 1.51 16 47 H 0.07 0.92 6.04 -51.93 -0.31 0.61 16 48 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 373.15 15.07 5.62 5.62 Total: -1.00 -33.87 373.15 -7.72 -41.58 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -6.94 Total: 3.61 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -1.62 Total: -1.71 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.92 Total: -48.17 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.68 Total: -18.00 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.87 -7.72 -41.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173766059.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.770 kcal (2) G-P(sol) polarization free energy of solvation -33.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds