Wall clock time and date at job start Tue Mar 31 2020 20:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45200 * 109.47387 * 2 1 4 4 C 1.34224 * 117.00013 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99971 * 180.02562 * 4 3 2 7 7 N 1.46900 * 109.46942 * 175.83597 * 6 4 3 8 8 C 1.46901 * 111.00006 * 288.71405 * 7 6 4 9 9 C 1.50697 * 109.47452 * 293.72726 * 8 7 6 10 10 H 1.08008 * 119.99907 * 5.21477 * 9 8 7 11 11 C 1.37876 * 120.00278 * 185.22157 * 9 8 7 12 12 N 1.31513 * 120.00185 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99954 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47415 * 59.99975 * 13 11 9 15 15 H 1.48498 * 109.46994 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47092 * 299.99794 * 13 11 9 17 17 C 1.46896 * 110.99876 * 164.76490 * 7 6 4 18 18 H 1.09007 * 109.47273 * 63.95095 * 17 7 6 19 19 C 1.52999 * 109.47380 * 183.95012 * 17 7 6 20 20 C 1.53002 * 109.47472 * 179.97438 * 19 17 7 21 21 C 1.52991 * 109.47157 * 300.00473 * 20 19 17 22 22 C 1.52995 * 109.47665 * 59.99832 * 21 20 19 23 23 H 1.08995 * 109.47464 * 179.97438 * 22 21 20 24 24 N 1.46499 * 109.47040 * 59.99740 * 22 21 20 25 25 N 1.28878 * 125.44637 * 119.72538 * 24 22 21 26 26 C 1.31042 * 107.91764 * 179.89904 * 25 24 22 27 27 N 1.33317 * 106.89874 * 0.35263 * 26 25 24 28 28 N 1.28785 * 125.45090 * 300.02583 * 24 22 21 29 29 C 1.53004 * 109.47326 * 303.94980 * 17 7 6 30 30 H 1.09008 * 109.47079 * 300.00048 * 1 2 3 31 31 H 1.09000 * 109.47204 * 60.00058 * 1 2 3 32 32 H 1.09004 * 109.47468 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47066 * 240.00006 * 2 1 3 34 34 H 1.08999 * 109.46739 * 120.00201 * 2 1 3 35 35 H 1.08995 * 109.47237 * 55.83235 * 6 4 3 36 36 H 1.09000 * 109.46734 * 295.83415 * 6 4 3 37 37 H 1.09007 * 109.46740 * 53.71964 * 8 7 6 38 38 H 1.08999 * 109.47419 * 173.72285 * 8 7 6 39 39 H 0.96992 * 120.00198 * 180.02562 * 12 11 9 40 40 H 1.09007 * 109.46850 * 59.99824 * 19 17 7 41 41 H 1.09004 * 109.47205 * 300.00381 * 19 17 7 42 42 H 1.09005 * 109.46733 * 60.00642 * 20 19 17 43 43 H 1.08998 * 109.47210 * 179.97438 * 20 19 17 44 44 H 1.09005 * 109.47314 * 179.97438 * 21 20 19 45 45 H 1.09005 * 109.46875 * 299.99222 * 21 20 19 46 46 H 1.07995 * 126.55112 * 180.13863 * 26 25 24 47 47 H 1.09002 * 109.46867 * 60.00227 * 29 17 7 48 48 H 1.08997 * 109.46977 * 300.00344 * 29 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 7 5.3843 2.8617 0.1022 8 6 5.7978 2.4310 1.4444 9 6 5.4283 3.4922 2.4486 10 1 4.8614 4.3569 2.1366 11 6 5.8140 3.3592 3.7657 12 7 6.5039 2.3061 4.1457 13 14 5.3565 4.6750 5.0102 14 1 3.8783 4.7979 5.0800 15 1 5.8849 4.2981 6.3459 16 1 5.9422 5.9748 4.5944 17 6 6.0035 4.1457 -0.2526 18 1 5.7009 4.9063 0.4673 19 6 7.5265 4.0007 -0.2313 20 6 8.1714 5.3378 -0.6015 21 6 7.7181 5.7521 -2.0027 22 6 6.1952 5.8972 -2.0241 23 1 5.8723 6.1928 -3.0222 24 7 5.7885 6.9198 -1.0570 25 7 5.1524 8.0045 -1.3392 26 6 4.9648 8.6640 -0.2225 27 7 5.5186 7.9419 0.7517 28 7 6.0141 6.8811 0.2103 29 6 5.5503 4.5606 -1.6538 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 3.5260 3.4934 0.8514 36 1 3.6461 3.4445 -0.9238 37 1 5.2929 1.4989 1.6985 38 1 6.8766 2.2759 1.4601 39 1 6.7749 2.2124 5.0723 40 1 7.8291 3.2401 -0.9511 41 1 7.8494 3.7050 0.7669 42 1 7.8689 6.0986 0.1181 43 1 9.2564 5.2346 -0.5859 44 1 8.1772 6.7049 -2.2663 45 1 8.0207 4.9912 -2.7223 46 1 4.4610 9.6130 -0.1129 47 1 4.4653 4.6640 -1.6689 48 1 5.8529 3.8000 -2.3736 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173766059.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:36 Heat of formation + Delta-G solvation = 38.644761 kcal Electronic energy + Delta-G solvation = -31526.014612 eV Core-core repulsion = 27426.217913 eV Total energy + Delta-G solvation = -4099.796699 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.25151 -41.53494 -40.33084 -37.99384 -37.04076 -34.99326 -34.53849 -33.53731 -32.68981 -31.66618 -30.81420 -29.69448 -27.21366 -25.78370 -24.73336 -24.54111 -23.99655 -23.07921 -22.15140 -21.42136 -20.87723 -18.90041 -18.50217 -18.13971 -17.88609 -17.57717 -17.11362 -16.84815 -16.66461 -16.33277 -15.64821 -15.46002 -15.28716 -15.02961 -14.66017 -14.49097 -14.25704 -14.05565 -13.64537 -13.62838 -13.49482 -13.26135 -13.05427 -12.96855 -12.88743 -12.76759 -12.56556 -12.48491 -12.46334 -12.33678 -12.10917 -11.95701 -11.80898 -11.63320 -11.55617 -11.48800 -11.31532 -11.16018 -11.00752 -10.85652 -10.56231 -9.04493 -8.15001 -6.31984 0.36977 1.15010 1.28770 1.32306 1.35795 1.39356 1.43965 1.67521 2.36521 3.10754 3.14180 3.23595 3.55955 3.62381 3.81824 3.85445 3.88367 3.99935 4.08869 4.12042 4.20215 4.30469 4.34667 4.40872 4.41933 4.49721 4.58020 4.72405 4.77530 4.84326 4.92008 4.92443 4.94877 4.95999 5.03334 5.13620 5.17736 5.29189 5.34837 5.36944 5.39004 5.49041 5.52942 5.70485 5.80029 6.00859 6.18232 6.41988 6.86447 6.90724 7.38401 7.53892 8.87668 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008355 B = 0.005092 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3350.640362 B = 5497.501032 C = 6918.386368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.052 3.948 3 O -0.368 6.368 4 C 0.466 3.534 5 O -0.521 6.521 6 C 0.062 3.938 7 N -0.519 5.519 8 C 0.208 3.792 9 C -0.542 4.542 10 H 0.053 0.947 11 C 0.020 3.980 12 N -0.924 5.924 13 Si 0.940 3.060 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.271 1.271 17 C 0.079 3.921 18 H 0.058 0.942 19 C -0.095 4.095 20 C -0.127 4.127 21 C -0.118 4.118 22 C 0.155 3.845 23 H 0.163 0.837 24 N -0.124 5.124 25 N -0.320 5.320 26 C 0.138 3.862 27 N -0.341 5.341 28 N -0.063 5.063 29 C -0.127 4.127 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.136 0.864 37 H -0.003 1.003 38 H 0.016 0.984 39 H 0.263 0.737 40 H 0.072 0.928 41 H 0.032 0.968 42 H 0.056 0.944 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.130 0.870 46 H 0.269 0.731 47 H 0.075 0.925 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.867 7.113 -17.611 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 O -0.285 6.285 4 C 0.309 3.691 5 O -0.408 6.408 6 C -0.067 4.067 7 N -0.243 5.243 8 C 0.082 3.918 9 C -0.582 4.582 10 H 0.071 0.929 11 C -0.180 4.180 12 N -0.564 5.564 13 Si 0.766 3.234 14 H -0.198 1.198 15 H -0.207 1.207 16 H -0.197 1.197 17 C -0.029 4.029 18 H 0.075 0.925 19 C -0.133 4.133 20 C -0.165 4.165 21 C -0.156 4.156 22 C 0.056 3.944 23 H 0.180 0.820 24 N -0.039 5.039 25 N -0.170 5.170 26 C -0.164 4.164 27 N -0.210 5.210 28 N -0.055 5.055 29 C -0.166 4.166 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.153 0.847 37 H 0.015 0.985 38 H 0.034 0.966 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.148 0.852 46 H 0.285 0.715 47 H 0.093 0.907 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.107 5.805 -17.634 19.254 hybrid contribution -0.554 1.126 2.130 2.472 sum -5.661 6.931 -15.503 17.901 Atomic orbital electron populations 1.21806 0.89850 1.04453 1.03711 1.23257 0.97396 0.79442 1.02067 1.86474 1.24039 1.33693 1.84286 1.23939 0.80428 0.93088 0.71615 1.90614 1.60953 1.43879 1.45369 1.21605 0.91020 0.89661 1.04367 1.62221 1.03979 1.29126 1.29007 1.19361 0.95354 0.93769 0.83363 1.21809 1.34919 1.06822 0.94604 0.92916 1.25617 0.94945 0.97106 1.00298 1.70058 1.38960 1.29673 1.17729 0.85873 0.78729 0.80255 0.78556 1.19772 1.20676 1.19651 1.21782 0.95203 0.90086 0.95873 0.92469 1.21342 0.93677 0.97562 1.00747 1.21710 1.00652 0.96992 0.97194 1.21976 0.90557 1.04542 0.98538 1.22475 0.97811 0.83411 0.90686 0.81964 1.50918 1.32286 1.14359 1.06361 1.74621 1.15919 0.98067 1.28442 1.28088 1.01459 1.03588 0.83292 1.75993 1.14510 1.01498 1.29005 1.79193 1.17087 1.16100 0.93154 1.22173 1.00661 0.95540 0.98203 0.91893 0.90516 0.87914 0.90841 0.92963 0.92000 0.84707 0.98465 0.96624 0.92813 0.90903 0.94934 0.92533 0.90476 0.89799 0.85154 0.71513 0.90706 0.85323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 10.29 71.98 0.74 -1.90 16 2 C 0.05 1.44 6.19 71.98 0.45 1.88 16 3 O -0.37 -12.56 10.22 -51.35 -0.52 -13.09 16 4 C 0.47 18.66 7.55 71.24 0.54 19.20 16 5 O -0.52 -24.19 14.76 21.96 0.32 -23.87 16 6 C 0.06 2.38 5.25 85.56 0.45 2.83 16 7 N -0.52 -21.85 4.19 -880.06 -3.69 -25.54 16 8 C 0.21 11.25 4.39 85.56 0.38 11.63 16 9 C -0.54 -30.81 7.43 25.60 0.19 -30.62 16 10 H 0.05 2.99 5.92 -2.91 -0.02 2.97 16 11 C 0.02 1.17 5.46 84.65 0.46 1.63 16 12 N -0.92 -57.33 13.29 21.45 0.28 -57.04 16 13 Si 0.94 46.87 29.54 68.60 2.03 48.90 16 14 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 15 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 16 H -0.27 -13.54 7.11 99.48 0.71 -12.83 16 17 C 0.08 2.79 1.33 44.92 0.06 2.85 16 18 H 0.06 2.42 3.78 -2.38 -0.01 2.41 16 19 C -0.10 -3.31 4.97 30.59 0.15 -3.16 16 20 C -0.13 -3.48 5.64 30.59 0.17 -3.31 16 21 C -0.12 -2.07 5.64 30.59 0.17 -1.90 16 22 C 0.16 2.99 3.60 44.98 0.16 3.15 16 23 H 0.16 1.87 8.14 -2.39 -0.02 1.85 16 24 N -0.12 -3.33 3.73 -169.66 -0.63 -3.96 16 25 N -0.32 -7.95 12.13 -61.10 -0.74 -8.69 16 26 C 0.14 3.42 13.26 180.68 2.40 5.82 16 27 N -0.34 -11.74 12.50 -61.11 -0.76 -12.51 16 28 N -0.06 -2.19 7.37 37.02 0.27 -1.92 16 29 C -0.13 -2.97 4.61 30.58 0.14 -2.83 16 30 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.07 1.90 8.13 -2.39 -0.02 1.88 16 34 H 0.05 1.60 8.13 -2.39 -0.02 1.58 16 35 H 0.06 2.65 6.55 -2.39 -0.02 2.63 16 36 H 0.14 3.95 5.49 -2.39 -0.01 3.93 16 37 H 0.00 -0.17 6.44 -2.38 -0.02 -0.19 16 38 H 0.02 0.93 6.43 -2.39 -0.02 0.91 16 39 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 41 H 0.03 1.45 6.46 -2.39 -0.02 1.43 16 42 H 0.06 1.91 5.49 -2.38 -0.01 1.89 16 43 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 45 H 0.13 1.51 8.14 -2.38 -0.02 1.49 16 46 H 0.27 3.73 8.06 -2.91 -0.02 3.70 16 47 H 0.07 1.70 6.04 -2.39 -0.01 1.68 16 48 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -80.19 373.15 4.00 -76.20 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.98 Total: 16.25 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 6.46 Total: 5.26 kcal Atomic # 7 Polarization: -104.38 SS G_CDS: -5.27 Total: -109.65 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -0.20 Total: -36.95 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -80.19 4.00 -76.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173766059.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.843 kcal (2) G-P(sol) polarization free energy of solvation -80.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds