Wall clock time and date at job start Tue Mar 31 2020 21:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35048 * 126.39694 * 2 1 4 4 N 1.30499 * 108.69491 * 180.27008 * 3 2 1 5 5 C 1.34128 * 109.26028 * 359.76417 * 4 3 2 6 6 C 1.34671 * 108.01866 * 0.02562 * 5 4 3 7 7 C 1.50697 * 126.58956 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47466 * 85.02112 * 7 6 5 9 9 C 1.50701 * 109.47212 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46983 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47452 * 179.97438 * 13 12 11 15 15 N 1.46898 * 109.47342 * 179.97438 * 14 13 12 16 16 C 1.46890 * 111.00202 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47411 * 180.02562 * 16 15 14 18 18 O 1.21289 * 119.99984 * 0.02562 * 17 16 15 19 19 N 1.34782 * 120.00148 * 179.97438 * 17 16 15 20 20 C 1.37089 * 120.00031 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00230 * 0.02562 * 20 19 17 22 22 C 1.38956 * 120.00171 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99842 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00047 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47129 * 60.00435 * 24 22 20 26 26 H 1.48499 * 109.46582 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46949 * 300.00266 * 24 22 20 28 28 H 1.09005 * 109.46654 * 270.12055 * 1 2 3 29 29 H 1.09001 * 109.46811 * 30.11554 * 1 2 3 30 30 H 1.08994 * 109.47304 * 150.11955 * 1 2 3 31 31 H 1.08001 * 125.65451 * 0.07448 * 3 2 1 32 32 H 1.08004 * 125.98860 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47120 * 325.01865 * 7 6 5 34 34 H 1.08998 * 109.46862 * 205.02667 * 7 6 5 35 35 H 1.09002 * 109.47153 * 59.99773 * 8 7 6 36 36 H 1.09001 * 109.46832 * 299.99964 * 8 7 6 37 37 H 0.96995 * 120.00011 * 0.02562 * 11 9 8 38 38 H 1.09001 * 109.47487 * 300.00114 * 12 11 9 39 39 H 1.09002 * 109.47182 * 60.00342 * 12 11 9 40 40 H 1.09001 * 109.47289 * 299.99909 * 13 12 11 41 41 H 1.09002 * 109.47153 * 59.99993 * 13 12 11 42 42 H 1.08998 * 109.47061 * 300.00668 * 14 13 12 43 43 H 1.09002 * 109.46668 * 60.00355 * 14 13 12 44 44 H 1.00899 * 110.99915 * 56.04913 * 15 14 13 45 45 H 1.09002 * 109.47335 * 300.00276 * 16 15 14 46 46 H 1.09005 * 109.47135 * 59.99948 * 16 15 14 47 47 H 0.97005 * 119.99795 * 0.02562 * 19 17 16 48 48 H 0.96990 * 120.00032 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6902 -0.0058 5 6 3.5460 -0.6505 -0.0045 6 6 2.2772 -1.1018 0.0018 7 6 1.8363 -2.5428 0.0049 8 6 1.8136 -3.0662 1.4424 9 6 1.3721 -4.5071 1.4455 10 8 1.1026 -5.0609 0.4007 11 7 1.2777 -5.1805 2.6092 12 6 0.8490 -6.5813 2.6121 13 6 0.8262 -7.1047 4.0496 14 6 0.3779 -8.5676 4.0528 15 7 0.3566 -9.0702 5.4329 16 6 -0.0696 -10.4753 5.4749 17 6 -0.0798 -10.9547 6.9036 18 8 0.2364 -10.1999 7.7988 19 7 -0.4413 -12.2219 7.1867 20 6 -0.4501 -12.6581 8.4863 21 1 -0.1677 -11.9863 9.2834 22 6 -0.8233 -13.9644 8.7783 23 7 -1.1673 -14.7818 7.8085 24 14 -0.8359 -14.5586 10.5492 25 1 -1.7792 -13.7303 11.3425 26 1 -1.2674 -15.9789 10.5916 27 1 0.5294 -14.4391 11.1211 28 1 -0.3633 0.0022 1.0277 29 1 -0.3633 0.8890 -0.5156 30 1 -0.3633 -0.8910 -0.5119 31 1 1.9335 2.1145 0.0011 32 1 4.4368 -1.2612 -0.0087 33 1 2.5323 -3.1370 -0.5872 34 1 0.8375 -2.6181 -0.4250 35 1 1.1175 -2.4720 2.0345 36 1 2.8124 -2.9909 1.8722 37 1 1.4936 -4.7376 3.4447 38 1 -0.1500 -6.6565 2.1825 39 1 1.5449 -7.1755 2.0197 40 1 1.8250 -7.0295 4.4796 41 1 0.1301 -6.5105 4.6416 42 1 -0.6209 -8.6424 3.6229 43 1 1.0737 -9.1620 3.4607 44 1 -0.2318 -8.4960 6.0178 45 1 -1.0717 -10.5638 5.0552 46 1 0.6231 -11.0827 4.8924 47 1 -0.6946 -12.8254 6.4708 48 1 -1.4274 -15.6936 8.0122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175003046.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:17 Heat of formation + Delta-G solvation = -24.152004 kcal Electronic energy + Delta-G solvation = -26700.256742 eV Core-core repulsion = 22597.736971 eV Total energy + Delta-G solvation = -4102.519771 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.53365 -40.06535 -38.34139 -36.66641 -34.98532 -34.68786 -34.04438 -33.86011 -31.60493 -31.15642 -29.36013 -27.49621 -27.19847 -25.39010 -24.30805 -23.01521 -21.87326 -21.77605 -20.67596 -20.19873 -19.23671 -17.91799 -17.74887 -17.09460 -16.59690 -16.42964 -16.13872 -15.89376 -15.74558 -15.14731 -14.73723 -14.59589 -14.44671 -14.22080 -13.91387 -13.63088 -13.56095 -13.51836 -13.44344 -13.31569 -13.00348 -12.82347 -12.54559 -12.09832 -11.87538 -11.83178 -11.67984 -11.48670 -11.45587 -11.09454 -10.96581 -10.45345 -10.36901 -10.24768 -10.21934 -10.02949 -9.51489 -9.41458 -8.77291 -8.49476 -8.10093 -7.97586 -6.42954 -3.83946 1.54680 2.27434 2.29433 2.71656 2.85773 3.19128 3.24993 3.29304 3.89105 4.04570 4.09883 4.16988 4.27988 4.29984 4.40200 4.45407 4.51494 4.65556 4.76557 4.80606 4.90542 4.96363 5.00633 5.03737 5.15485 5.16882 5.24344 5.38070 5.39391 5.45567 5.54420 5.58481 5.76576 5.92332 5.94006 5.95732 5.99070 6.10631 6.24934 6.31614 6.72172 7.11605 7.16265 7.53705 7.61269 7.65233 7.85130 8.04584 8.59798 9.16320 9.52735 10.04135 10.74708 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.039354 B = 0.001172 C = 0.001161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.315783 B =23892.642872 C =24110.486854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.460 5.460 3 C 0.178 3.822 4 N -0.494 5.494 5 C -0.023 4.023 6 C -0.025 4.025 7 C -0.026 4.026 8 C -0.135 4.135 9 C 0.512 3.488 10 O -0.542 6.542 11 N -0.729 5.729 12 C 0.120 3.880 13 C -0.129 4.129 14 C 0.062 3.938 15 N -0.670 5.670 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.204 0.796 32 H 0.170 0.830 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.402 0.598 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.029 0.971 43 H 0.074 0.926 44 H 0.349 0.651 45 H 0.044 0.956 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.544 27.431 -17.887 32.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.143 5.143 3 C -0.104 4.104 4 N -0.212 5.212 5 C -0.171 4.171 6 C -0.139 4.139 7 C -0.065 4.065 8 C -0.175 4.175 9 C 0.298 3.702 10 O -0.419 6.419 11 N -0.381 5.381 12 C -0.004 4.004 13 C -0.167 4.167 14 C -0.068 4.068 15 N -0.302 5.302 16 C -0.082 4.082 17 C 0.225 3.775 18 O -0.469 6.469 19 N -0.199 5.199 20 C -0.431 4.431 21 H 0.120 0.880 22 C -0.178 4.178 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.221 0.779 32 H 0.187 0.813 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.119 0.881 37 H 0.237 0.763 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.047 0.953 43 H 0.092 0.908 44 H 0.168 0.832 45 H 0.062 0.938 46 H 0.105 0.895 47 H 0.226 0.774 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.684 27.675 -18.023 33.135 hybrid contribution -1.854 -0.962 0.700 2.203 sum 0.830 26.713 -17.323 31.849 Atomic orbital electron populations 1.22085 0.76603 1.04921 1.03818 1.45349 1.07630 1.06774 1.54532 1.24961 0.85646 0.93448 1.06328 1.70294 1.19434 1.12076 1.19349 1.22129 0.95809 0.91099 1.08073 1.21247 0.91324 0.89688 1.11682 1.19722 1.03355 0.87631 0.95832 1.21658 1.04136 0.92722 0.99023 1.20635 0.77286 0.88679 0.83607 1.90728 1.49442 1.70204 1.31505 1.46050 1.69347 1.13408 1.09313 1.21341 1.00566 0.80985 0.97536 1.21747 1.03543 0.96398 0.95060 1.21829 0.99575 0.94394 0.90986 1.60042 1.59274 1.02540 1.08335 1.21669 0.99147 0.90261 0.97117 1.19808 0.84458 0.83557 0.89660 1.90516 1.53274 1.55296 1.47789 1.41855 1.58843 1.09999 1.09228 1.19662 1.42763 0.96165 0.84502 0.87967 1.25262 0.97005 0.95828 0.99751 1.69600 1.45499 1.06963 1.32229 0.85915 0.78906 0.77448 0.81934 1.19918 1.20957 1.19860 0.90336 0.89256 0.89431 0.77902 0.81315 0.88571 0.90463 0.89125 0.88130 0.76326 0.91471 0.91134 0.90072 0.91299 0.95273 0.90755 0.83207 0.93831 0.89528 0.77436 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.15 11.00 59.85 0.66 0.81 16 2 N -0.46 -2.67 3.15 -121.37 -0.38 -3.05 16 3 C 0.18 1.21 12.56 -90.37 -1.14 0.08 16 4 N -0.49 -4.87 11.25 -14.66 -0.16 -5.04 16 5 C -0.02 -0.20 11.79 -17.81 -0.21 -0.41 16 6 C -0.02 -0.17 6.21 -81.60 -0.51 -0.68 16 7 C -0.03 -0.16 4.84 -27.89 -0.13 -0.30 16 8 C -0.13 -0.70 5.68 -27.88 -0.16 -0.86 16 9 C 0.51 4.21 7.83 -10.98 -0.09 4.12 16 10 O -0.54 -6.61 15.98 5.56 0.09 -6.52 16 11 N -0.73 -5.12 5.56 -60.30 -0.33 -5.46 16 12 C 0.12 1.00 5.67 -4.04 -0.02 0.98 16 13 C -0.13 -1.13 5.59 -26.73 -0.15 -1.28 16 14 C 0.06 0.70 5.69 -3.82 -0.02 0.68 16 15 N -0.67 -10.35 6.13 -115.06 -0.70 -11.05 16 16 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 17 C 0.44 10.32 7.82 -10.98 -0.09 10.24 16 18 O -0.58 -15.77 15.78 5.55 0.09 -15.69 16 19 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 20 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 24 Si 0.93 20.94 29.55 -169.99 -5.02 15.91 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 28 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 30 H 0.09 0.18 7.11 -51.93 -0.37 -0.19 16 31 H 0.20 0.64 8.06 -52.49 -0.42 0.22 16 32 H 0.17 1.17 8.06 -52.48 -0.42 0.74 16 33 H 0.10 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.08 0.49 7.04 -51.93 -0.37 0.12 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.40 1.88 8.47 -40.82 -0.35 1.53 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.35 5.50 8.43 -39.29 -0.33 5.17 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 47 H 0.39 9.46 7.90 -40.82 -0.32 9.13 16 48 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 409.43 15.07 6.17 6.17 Total: -1.00 -36.58 409.43 -9.31 -45.89 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -7.58 Total: 10.59 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -2.12 Total: 6.21 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -0.92 Total: -62.57 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: 0.18 Total: -22.20 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.58 -9.31 -45.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175003046.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.736 kcal (2) G-P(sol) polarization free energy of solvation -36.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds