Wall clock time and date at job start Tue Mar 31 2020 21:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35048 * 126.39694 * 2 1 4 4 N 1.30499 * 108.69491 * 180.27008 * 3 2 1 5 5 C 1.34128 * 109.26028 * 359.76417 * 4 3 2 6 6 C 1.34671 * 108.01866 * 0.02562 * 5 4 3 7 7 C 1.50697 * 126.58956 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47466 * 85.02112 * 7 6 5 9 9 C 1.50701 * 109.47212 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46983 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47452 * 179.97438 * 13 12 11 15 15 N 1.46898 * 109.47342 * 179.97438 * 14 13 12 16 16 C 1.46890 * 111.00202 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47411 * 180.02562 * 16 15 14 18 18 O 1.21289 * 119.99984 * 0.02562 * 17 16 15 19 19 N 1.34782 * 120.00148 * 179.97438 * 17 16 15 20 20 C 1.37089 * 120.00031 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00230 * 0.02562 * 20 19 17 22 22 C 1.38956 * 120.00171 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99842 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00047 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47129 * 60.00435 * 24 22 20 26 26 H 1.48499 * 109.46582 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46949 * 300.00266 * 24 22 20 28 28 H 1.09005 * 109.46654 * 270.12055 * 1 2 3 29 29 H 1.09001 * 109.46811 * 30.11554 * 1 2 3 30 30 H 1.08994 * 109.47304 * 150.11955 * 1 2 3 31 31 H 1.08001 * 125.65451 * 0.07448 * 3 2 1 32 32 H 1.08004 * 125.98860 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47120 * 325.01865 * 7 6 5 34 34 H 1.08998 * 109.46862 * 205.02667 * 7 6 5 35 35 H 1.09002 * 109.47153 * 59.99773 * 8 7 6 36 36 H 1.09001 * 109.46832 * 299.99964 * 8 7 6 37 37 H 0.96995 * 120.00011 * 0.02562 * 11 9 8 38 38 H 1.09001 * 109.47487 * 300.00114 * 12 11 9 39 39 H 1.09002 * 109.47182 * 60.00342 * 12 11 9 40 40 H 1.09001 * 109.47289 * 299.99909 * 13 12 11 41 41 H 1.09002 * 109.47153 * 59.99993 * 13 12 11 42 42 H 1.08998 * 109.47061 * 300.00668 * 14 13 12 43 43 H 1.09002 * 109.46668 * 60.00355 * 14 13 12 44 44 H 1.00899 * 110.99915 * 56.04913 * 15 14 13 45 45 H 1.09002 * 109.47335 * 300.00276 * 16 15 14 46 46 H 1.09005 * 109.47135 * 59.99948 * 16 15 14 47 47 H 0.97005 * 119.99795 * 0.02562 * 19 17 16 48 48 H 0.96990 * 120.00032 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6902 -0.0058 5 6 3.5460 -0.6505 -0.0045 6 6 2.2772 -1.1018 0.0018 7 6 1.8363 -2.5428 0.0049 8 6 1.8136 -3.0662 1.4424 9 6 1.3721 -4.5071 1.4455 10 8 1.1026 -5.0609 0.4007 11 7 1.2777 -5.1805 2.6092 12 6 0.8490 -6.5813 2.6121 13 6 0.8262 -7.1047 4.0496 14 6 0.3779 -8.5676 4.0528 15 7 0.3566 -9.0702 5.4329 16 6 -0.0696 -10.4753 5.4749 17 6 -0.0798 -10.9547 6.9036 18 8 0.2364 -10.1999 7.7988 19 7 -0.4413 -12.2219 7.1867 20 6 -0.4501 -12.6581 8.4863 21 1 -0.1677 -11.9863 9.2834 22 6 -0.8233 -13.9644 8.7783 23 7 -1.1673 -14.7818 7.8085 24 14 -0.8359 -14.5586 10.5492 25 1 -1.7792 -13.7303 11.3425 26 1 -1.2674 -15.9789 10.5916 27 1 0.5294 -14.4391 11.1211 28 1 -0.3633 0.0022 1.0277 29 1 -0.3633 0.8890 -0.5156 30 1 -0.3633 -0.8910 -0.5119 31 1 1.9335 2.1145 0.0011 32 1 4.4368 -1.2612 -0.0087 33 1 2.5323 -3.1370 -0.5872 34 1 0.8375 -2.6181 -0.4250 35 1 1.1175 -2.4720 2.0345 36 1 2.8124 -2.9909 1.8722 37 1 1.4936 -4.7376 3.4447 38 1 -0.1500 -6.6565 2.1825 39 1 1.5449 -7.1755 2.0197 40 1 1.8250 -7.0295 4.4796 41 1 0.1301 -6.5105 4.6416 42 1 -0.6209 -8.6424 3.6229 43 1 1.0737 -9.1620 3.4607 44 1 -0.2318 -8.4960 6.0178 45 1 -1.0717 -10.5638 5.0552 46 1 0.6231 -11.0827 4.8924 47 1 -0.6946 -12.8254 6.4708 48 1 -1.4274 -15.6936 8.0122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175003046.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:15 Heat of formation + Delta-G solvation = -51.476389 kcal Electronic energy + Delta-G solvation = -26701.441616 eV Core-core repulsion = 22597.736971 eV Total energy + Delta-G solvation = -4103.704645 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.01953 -40.74427 -40.15112 -37.67310 -36.12973 -35.63765 -35.19474 -34.50584 -33.29169 -32.41008 -29.96107 -28.50885 -27.77488 -26.65041 -25.45104 -24.03484 -22.56974 -22.36462 -21.35356 -21.02601 -20.66623 -19.90038 -18.29459 -17.85039 -17.60497 -17.28239 -16.99932 -16.80335 -16.49411 -16.45712 -15.98840 -15.89542 -15.37581 -15.22034 -15.06977 -14.71701 -14.45994 -14.35076 -13.96273 -13.87710 -13.71878 -13.54912 -13.40153 -13.31904 -13.15599 -12.98856 -12.84535 -12.65060 -12.42594 -12.41520 -12.14041 -12.11858 -11.83804 -11.49864 -10.99601 -10.88369 -10.49107 -10.35276 -10.08474 -10.01798 -9.33237 -9.29889 -8.46489 -5.95507 1.06629 1.40330 1.42430 1.53336 1.64218 1.92052 2.05145 2.14974 2.25402 2.31199 2.95702 3.20914 3.52819 3.59448 3.90085 3.95275 3.97765 4.01151 4.03415 4.11010 4.16966 4.27328 4.34811 4.43000 4.48748 4.49066 4.57722 4.58915 4.60103 4.70876 4.71564 4.72296 4.80713 4.93543 5.07919 5.17513 5.22670 5.40816 5.45739 5.46791 5.80045 5.88555 6.09868 6.31649 6.41580 6.55826 6.60027 7.12385 7.14023 7.25538 7.56109 8.11176 8.70668 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.039354 B = 0.001172 C = 0.001161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.315783 B =23892.642872 C =24110.486854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.458 5.458 3 C 0.178 3.822 4 N -0.539 5.539 5 C -0.050 4.050 6 C -0.022 4.022 7 C -0.020 4.020 8 C -0.123 4.123 9 C 0.511 3.489 10 O -0.585 6.585 11 N -0.721 5.721 12 C 0.126 3.874 13 C -0.116 4.116 14 C 0.062 3.938 15 N -0.684 5.684 16 C 0.064 3.936 17 C 0.436 3.564 18 O -0.624 6.624 19 N -0.572 5.572 20 C -0.337 4.337 21 H 0.079 0.921 22 C -0.011 4.011 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.272 1.272 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.235 0.765 32 H 0.172 0.828 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.416 0.584 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.041 0.959 43 H 0.077 0.923 44 H 0.345 0.655 45 H 0.067 0.933 46 H 0.103 0.897 47 H 0.396 0.604 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.643 28.262 -17.921 33.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.141 5.141 3 C -0.104 4.104 4 N -0.258 5.258 5 C -0.197 4.197 6 C -0.138 4.138 7 C -0.059 4.059 8 C -0.163 4.163 9 C 0.299 3.701 10 O -0.465 6.465 11 N -0.373 5.373 12 C 0.002 3.998 13 C -0.154 4.154 14 C -0.067 4.067 15 N -0.316 5.316 16 C -0.068 4.068 17 C 0.224 3.776 18 O -0.510 6.510 19 N -0.210 5.210 20 C -0.467 4.467 21 H 0.097 0.903 22 C -0.211 4.211 23 N -0.561 5.561 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.197 1.197 28 H 0.110 0.890 29 H 0.129 0.871 30 H 0.107 0.893 31 H 0.251 0.749 32 H 0.189 0.811 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.253 0.747 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.059 0.941 43 H 0.096 0.904 44 H 0.164 0.836 45 H 0.085 0.915 46 H 0.121 0.879 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.770 28.513 -18.062 33.799 hybrid contribution -1.587 -1.161 0.666 2.076 sum 0.184 27.352 -17.396 32.415 Atomic orbital electron populations 1.22368 0.74384 1.06118 1.05077 1.45562 1.08953 1.06067 1.53500 1.25566 0.85106 0.94847 1.04906 1.70246 1.21470 1.12810 1.21272 1.22343 0.96828 0.91167 1.09389 1.21269 0.91110 0.90253 1.11173 1.19628 1.02870 0.87029 0.96336 1.21602 1.05248 0.90720 0.98763 1.21103 0.76355 0.89592 0.83039 1.90713 1.51502 1.71301 1.33030 1.45975 1.68599 1.12897 1.09811 1.21169 1.00091 0.81627 0.96932 1.21589 1.03483 0.94994 0.95302 1.21917 1.00502 0.95697 0.88597 1.60044 1.59302 1.01518 1.10757 1.21531 1.01062 0.91601 0.92608 1.20903 0.82250 0.82501 0.91983 1.90482 1.54484 1.56129 1.49916 1.41931 1.59557 1.10899 1.08579 1.19654 1.44869 0.96793 0.85340 0.90253 1.26036 0.95959 0.95370 1.03751 1.69662 1.45303 1.07296 1.33844 0.84993 0.78839 0.77425 0.77115 1.19604 1.19503 1.19737 0.88998 0.87117 0.89287 0.74862 0.81072 0.89675 0.90593 0.87146 0.86821 0.74734 0.91944 0.92092 0.90366 0.90405 0.94053 0.90411 0.83598 0.91524 0.87878 0.76966 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.13 11.00 127.77 1.41 1.54 16 2 N -0.46 -4.62 3.15 -537.89 -1.70 -6.31 16 3 C 0.18 2.20 12.56 180.26 2.26 4.46 16 4 N -0.54 -10.59 11.25 -200.30 -2.25 -12.84 16 5 C -0.05 -0.86 11.79 83.52 0.98 0.12 16 6 C -0.02 -0.30 6.21 40.95 0.25 -0.04 16 7 C -0.02 -0.22 4.84 29.85 0.14 -0.08 16 8 C -0.12 -1.08 5.68 29.85 0.17 -0.91 16 9 C 0.51 7.77 7.83 87.66 0.69 8.46 16 10 O -0.59 -14.05 15.98 -3.03 -0.05 -14.10 16 11 N -0.72 -8.87 5.56 -463.06 -2.57 -11.45 16 12 C 0.13 1.93 5.67 86.38 0.49 2.42 16 13 C -0.12 -1.80 5.59 30.60 0.17 -1.63 16 14 C 0.06 1.27 5.69 86.31 0.49 1.76 16 15 N -0.68 -20.15 6.13 -517.94 -3.17 -23.33 16 16 C 0.06 2.14 6.17 85.56 0.53 2.67 16 17 C 0.44 20.52 7.82 87.66 0.69 21.21 16 18 O -0.62 -34.17 15.78 -3.06 -0.05 -34.22 16 19 N -0.57 -29.20 5.29 -306.98 -1.62 -30.83 16 20 C -0.34 -19.08 9.68 84.04 0.81 -18.26 16 21 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 22 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 23 N -0.92 -49.42 13.05 21.67 0.28 -49.14 16 24 Si 0.99 42.56 29.55 68.60 2.03 44.59 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 28 H 0.09 -0.02 8.14 -2.38 -0.02 -0.04 16 29 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 30 H 0.09 0.19 7.11 -2.39 -0.02 0.18 16 31 H 0.24 0.98 8.06 -2.91 -0.02 0.96 16 32 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 33 H 0.08 1.17 8.10 -2.39 -0.02 1.15 16 34 H 0.08 0.89 7.04 -2.39 -0.02 0.87 16 35 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.42 2.92 8.47 -92.71 -0.79 2.13 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.35 10.53 8.43 -89.69 -0.76 9.78 16 45 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.10 3.12 8.14 -2.38 -0.02 3.10 16 47 H 0.40 19.18 7.90 -92.70 -0.73 18.45 16 48 H 0.28 13.99 8.31 -92.72 -0.77 13.22 16 Total: -1.00 -80.28 409.43 -0.83 -81.10 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: -1.28 Total: 34.93 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 9.56 Total: 21.58 kcal Atomic # 7 Polarization: -122.85 SS G_CDS: -11.03 Total: -133.89 kcal Atomic # 8 Polarization: -48.22 SS G_CDS: -0.10 Total: -48.32 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -80.28 -0.83 -81.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175003046.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.626 kcal (2) G-P(sol) polarization free energy of solvation -80.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds