Wall clock time and date at job start Tue Mar 31 2020 20:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.46972 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00041 * 359.97438 * 5 4 3 7 7 N 1.34779 * 120.00037 * 179.97438 * 5 4 3 8 8 C 1.46923 * 120.62707 * 359.72624 * 7 5 4 9 9 C 1.52768 * 109.00444 * 233.57902 * 8 7 5 10 10 C 1.53038 * 109.38377 * 305.58965 * 9 8 7 11 11 C 1.53033 * 109.54014 * 61.23912 * 10 9 8 12 12 H 1.09002 * 109.49983 * 58.58459 * 11 10 9 13 13 N 1.46505 * 109.52655 * 178.66764 * 11 10 9 14 14 C 1.35307 * 125.86602 * 84.85344 * 13 11 10 15 15 C 1.35344 * 106.17569 * 180.02562 * 14 13 11 16 16 C 1.50704 * 126.75432 * 180.02562 * 15 14 13 17 17 N 1.46497 * 109.47237 * 95.00290 * 16 15 14 18 18 C 1.36943 * 119.99874 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00071 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99744 * 179.97438 * 18 17 16 21 21 N 1.31628 * 119.99867 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99763 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46793 * 90.00538 * 22 20 18 24 24 H 1.48503 * 109.47189 * 209.99935 * 22 20 18 25 25 H 1.48494 * 109.47355 * 330.00516 * 22 20 18 26 26 N 1.33779 * 106.49744 * 359.97438 * 15 14 13 27 27 N 1.28636 * 108.88014 * 359.73369 * 26 15 14 28 28 C 1.46924 * 120.63200 * 180.02562 * 7 5 4 29 29 H 1.09008 * 109.47201 * 299.99764 * 1 2 3 30 30 H 1.08997 * 109.47286 * 59.99983 * 1 2 3 31 31 H 1.09010 * 109.47076 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46848 * 239.99919 * 2 1 3 33 33 H 1.08997 * 109.47286 * 120.00017 * 2 1 3 34 34 H 1.09004 * 109.47054 * 299.99711 * 4 3 2 35 35 H 1.09000 * 109.47187 * 59.99767 * 4 3 2 36 36 H 1.08996 * 109.58962 * 353.40748 * 8 7 5 37 37 H 1.08999 * 109.59152 * 113.83958 * 8 7 5 38 38 H 1.09005 * 109.56277 * 185.55375 * 9 8 7 39 39 H 1.09003 * 109.36208 * 65.49863 * 9 8 7 40 40 H 1.08999 * 109.46023 * 301.21923 * 10 9 8 41 41 H 1.09001 * 109.45750 * 181.26376 * 10 9 8 42 42 H 1.08000 * 126.91209 * 0.02562 * 14 13 11 43 43 H 1.09006 * 109.47024 * 214.99786 * 16 15 14 44 44 H 1.09000 * 109.46902 * 334.99468 * 16 15 14 45 45 H 0.97002 * 119.99893 * 359.97438 * 17 16 15 46 46 H 0.97003 * 119.99161 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.58439 * 246.16213 * 28 7 5 48 48 H 1.09000 * 109.58394 * 6.58125 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8194 2.9162 -0.0012 6 8 2.9609 3.7729 -0.0016 7 7 5.1209 3.2664 -0.0013 8 6 6.1722 2.2400 0.0053 9 6 7.1257 2.5119 1.1674 10 6 7.6484 3.9470 1.0705 11 6 6.4762 4.9262 1.1659 12 1 5.9500 4.7730 2.1082 13 7 6.9800 6.3006 1.1050 14 6 7.2459 6.9981 -0.0234 15 6 7.6875 8.2125 0.3792 16 6 8.1140 9.3558 -0.5052 17 7 6.9839 10.2663 -0.7054 18 6 7.1351 11.3852 -1.4803 19 1 8.0875 11.5966 -1.9436 20 6 6.0641 12.2476 -1.6704 21 7 4.9035 11.9902 -1.1054 22 14 6.2705 13.7742 -2.7269 23 1 5.9379 13.4488 -4.1371 24 1 5.3612 14.8415 -2.2375 25 1 7.6762 14.2459 -2.6460 26 7 7.6698 8.1988 1.7168 27 7 7.2401 7.0539 2.1157 28 6 5.5153 4.6817 -0.0013 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0278 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8340 0.9765 0.8892 35 1 3.8333 0.9767 -0.8908 36 1 5.7209 1.2554 0.1275 37 1 6.7248 2.2769 -0.9335 38 1 7.9634 1.8158 1.1228 39 1 6.5934 2.3815 2.1097 40 1 8.1591 4.0839 0.1173 41 1 8.3462 4.1352 1.8864 42 1 7.1293 6.6550 -1.0408 43 1 8.9351 9.8944 -0.0321 44 1 8.4423 8.9666 -1.4690 45 1 6.1284 10.0762 -0.2896 46 1 4.1553 12.5931 -1.2379 47 1 6.0131 4.9222 -0.9406 48 1 4.6307 5.3075 0.1165 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185855616.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:18 Heat of formation + Delta-G solvation = 40.417518 kcal Electronic energy + Delta-G solvation = -28950.498001 eV Core-core repulsion = 24850.778175 eV Total energy + Delta-G solvation = -4099.719826 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.02411 -40.75250 -38.64751 -37.62491 -35.23730 -34.41113 -32.82870 -32.09653 -31.83922 -30.49117 -29.87875 -28.28158 -25.92304 -25.68441 -24.31389 -23.26342 -22.77483 -22.37977 -21.05245 -20.61197 -19.49613 -18.02556 -17.50644 -17.16421 -16.97173 -16.72740 -16.26724 -15.88500 -15.49265 -15.11001 -14.88489 -14.62620 -14.55294 -14.20199 -14.00864 -13.67687 -13.51085 -13.26718 -13.16289 -13.05510 -12.85747 -12.61203 -12.33843 -11.91465 -11.82551 -11.82339 -11.65914 -11.62066 -11.45562 -11.21109 -10.85168 -10.76582 -10.45818 -10.21533 -10.15848 -10.05268 -9.86650 -9.68277 -9.25124 -8.84410 -8.80291 -6.86657 -5.68485 -2.98461 1.80137 1.94115 2.14196 2.54201 2.94476 3.27328 3.49418 3.54144 3.56700 3.89747 3.96872 4.12304 4.18988 4.25457 4.47316 4.51819 4.52815 4.64622 4.66620 4.72271 4.72960 4.75163 4.86667 4.90893 5.05403 5.12781 5.14805 5.21558 5.29871 5.33908 5.45847 5.46671 5.52605 5.60057 5.67825 5.70540 5.78579 5.89224 6.22460 6.43633 6.51862 6.68782 6.76641 6.81216 6.83106 7.69473 7.75565 8.48489 8.86872 9.60073 10.16114 10.51891 11.54152 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012457 B = 0.002309 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.194052 B =12121.186182 C =13838.817114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.364 6.364 4 C 0.049 3.951 5 C 0.516 3.484 6 O -0.504 6.504 7 N -0.611 5.611 8 C 0.101 3.899 9 C -0.131 4.131 10 C -0.131 4.131 11 C 0.137 3.863 12 H 0.114 0.886 13 N -0.294 5.294 14 C -0.046 4.046 15 C -0.003 4.003 16 C 0.233 3.767 17 N -0.726 5.726 18 C -0.240 4.240 19 H 0.073 0.927 20 C -0.014 4.014 21 N -0.931 5.931 22 Si 0.910 3.090 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.281 1.281 26 N -0.253 5.253 27 N -0.094 5.094 28 C 0.105 3.895 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.187 0.813 43 H 0.039 0.961 44 H 0.037 0.963 45 H 0.386 0.614 46 H 0.255 0.745 47 H 0.086 0.914 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.501 -34.168 2.037 34.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.283 6.283 4 C -0.031 4.031 5 C 0.303 3.697 6 O -0.377 6.377 7 N -0.348 5.348 8 C -0.022 4.022 9 C -0.170 4.170 10 C -0.169 4.169 11 C 0.033 3.967 12 H 0.132 0.868 13 N -0.088 5.088 14 C -0.196 4.196 15 C -0.140 4.140 16 C 0.104 3.896 17 N -0.371 5.371 18 C -0.371 4.371 19 H 0.091 0.909 20 C -0.210 4.210 21 N -0.579 5.579 22 Si 0.741 3.259 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.207 1.207 26 N -0.120 5.120 27 N -0.072 5.072 28 C -0.018 4.018 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.204 0.796 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.104 0.896 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.949 -33.313 3.483 33.508 hybrid contribution -0.055 0.300 -1.554 1.584 sum 0.894 -33.013 1.929 33.082 Atomic orbital electron populations 1.21744 0.93193 1.02355 1.03691 1.22567 0.96206 0.83051 1.00190 1.88055 1.18161 1.26661 1.95403 1.22189 0.84364 0.94034 1.02539 1.20319 0.81841 0.90960 0.76577 1.90806 1.48542 1.51625 1.46707 1.47907 1.05507 1.06410 1.75011 1.21833 0.89464 0.91190 0.99702 1.21845 0.99747 0.96230 0.99171 1.21961 0.96878 0.93646 1.04444 1.21829 0.95789 0.76717 1.02329 0.86761 1.47206 1.43842 1.12476 1.05298 1.23319 1.08287 0.94294 0.93695 1.22474 1.03835 0.96192 0.91535 1.18946 0.91988 0.85984 0.92718 1.42311 1.09459 1.25112 1.60178 1.19221 0.96605 0.99144 1.22151 0.90895 1.24778 0.95857 0.99318 1.01042 1.69692 1.01532 1.38703 1.47976 0.86153 0.77115 0.82822 0.79859 1.21758 1.21808 1.20693 1.75105 1.15088 1.10435 1.11359 1.78282 1.17311 0.98152 1.13462 1.21833 0.99933 0.82764 0.97314 0.91573 0.91545 0.90856 0.93088 0.93113 0.90092 0.90064 0.89234 0.90235 0.89116 0.90635 0.90246 0.89894 0.79615 0.94346 0.94535 0.78061 0.93492 0.89607 0.87195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.28 37.16 0.38 -0.50 16 2 C 0.06 0.33 6.66 37.16 0.25 0.58 16 3 O -0.36 -3.59 9.88 -55.14 -0.54 -4.13 16 4 C 0.05 0.33 4.77 36.01 0.17 0.50 16 5 C 0.52 5.36 7.78 -10.99 -0.09 5.27 16 6 O -0.50 -8.07 15.91 -14.35 -0.23 -8.30 16 7 N -0.61 -4.73 2.98 -173.06 -0.52 -5.25 16 8 C 0.10 0.35 6.31 -3.93 -0.02 0.32 16 9 C -0.13 -0.46 6.06 -26.83 -0.16 -0.62 16 10 C -0.13 -0.85 5.49 -26.69 -0.15 -0.99 16 11 C 0.14 1.35 3.27 -67.83 -0.22 1.13 16 12 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 13 N -0.29 -4.23 3.26 -54.67 -0.18 -4.40 16 14 C -0.05 -0.70 10.61 -17.05 -0.18 -0.88 16 15 C 0.00 -0.05 6.62 -82.77 -0.55 -0.60 16 16 C 0.23 5.00 6.82 -5.19 -0.04 4.96 16 17 N -0.73 -19.48 5.59 -61.08 -0.34 -19.82 16 18 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 19 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -29.46 13.06 55.49 0.72 -28.74 16 22 Si 0.91 23.00 29.55 -169.99 -5.02 17.97 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 N -0.25 -5.28 12.41 33.29 0.41 -4.87 16 27 N -0.09 -1.71 13.16 60.35 0.79 -0.91 16 28 C 0.11 1.03 5.47 -3.73 -0.02 1.01 16 29 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.26 8.14 -51.92 -0.42 -0.16 16 32 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.08 0.31 7.68 -51.93 -0.40 -0.09 16 35 H 0.08 0.32 7.95 -51.93 -0.41 -0.09 16 36 H 0.09 0.10 5.93 -51.93 -0.31 -0.21 16 37 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.19 2.23 7.18 -52.49 -0.38 1.85 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.39 11.24 7.66 -40.82 -0.31 10.92 16 46 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 47 H 0.09 0.74 6.92 -51.93 -0.36 0.38 16 48 H 0.11 1.45 7.00 -51.93 -0.36 1.09 16 LS Contribution 395.06 15.07 5.95 5.95 Total: -1.00 -39.44 395.06 -7.39 -46.83 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.57 Total: 3.06 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -0.87 Total: 2.60 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: 0.90 Total: -63.99 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.77 Total: -12.43 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -39.44 -7.39 -46.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185855616.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.247 kcal (2) G-P(sol) polarization free energy of solvation -39.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds