Wall clock time and date at job start Tue Mar 31 2020 20:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.46972 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00041 * 359.97438 * 5 4 3 7 7 N 1.34779 * 120.00037 * 179.97438 * 5 4 3 8 8 C 1.46923 * 120.62707 * 359.72624 * 7 5 4 9 9 C 1.52768 * 109.00444 * 233.57902 * 8 7 5 10 10 C 1.53038 * 109.38377 * 305.58965 * 9 8 7 11 11 C 1.53033 * 109.54014 * 61.23912 * 10 9 8 12 12 H 1.09002 * 109.49983 * 58.58459 * 11 10 9 13 13 N 1.46505 * 109.52655 * 178.66764 * 11 10 9 14 14 C 1.35307 * 125.86602 * 84.85344 * 13 11 10 15 15 C 1.35344 * 106.17569 * 180.02562 * 14 13 11 16 16 C 1.50704 * 126.75432 * 180.02562 * 15 14 13 17 17 N 1.46497 * 109.47237 * 95.00290 * 16 15 14 18 18 C 1.36943 * 119.99874 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00071 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99744 * 179.97438 * 18 17 16 21 21 N 1.31628 * 119.99867 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99763 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46793 * 90.00538 * 22 20 18 24 24 H 1.48503 * 109.47189 * 209.99935 * 22 20 18 25 25 H 1.48494 * 109.47355 * 330.00516 * 22 20 18 26 26 N 1.33779 * 106.49744 * 359.97438 * 15 14 13 27 27 N 1.28636 * 108.88014 * 359.73369 * 26 15 14 28 28 C 1.46924 * 120.63200 * 180.02562 * 7 5 4 29 29 H 1.09008 * 109.47201 * 299.99764 * 1 2 3 30 30 H 1.08997 * 109.47286 * 59.99983 * 1 2 3 31 31 H 1.09010 * 109.47076 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46848 * 239.99919 * 2 1 3 33 33 H 1.08997 * 109.47286 * 120.00017 * 2 1 3 34 34 H 1.09004 * 109.47054 * 299.99711 * 4 3 2 35 35 H 1.09000 * 109.47187 * 59.99767 * 4 3 2 36 36 H 1.08996 * 109.58962 * 353.40748 * 8 7 5 37 37 H 1.08999 * 109.59152 * 113.83958 * 8 7 5 38 38 H 1.09005 * 109.56277 * 185.55375 * 9 8 7 39 39 H 1.09003 * 109.36208 * 65.49863 * 9 8 7 40 40 H 1.08999 * 109.46023 * 301.21923 * 10 9 8 41 41 H 1.09001 * 109.45750 * 181.26376 * 10 9 8 42 42 H 1.08000 * 126.91209 * 0.02562 * 14 13 11 43 43 H 1.09006 * 109.47024 * 214.99786 * 16 15 14 44 44 H 1.09000 * 109.46902 * 334.99468 * 16 15 14 45 45 H 0.97002 * 119.99893 * 359.97438 * 17 16 15 46 46 H 0.97003 * 119.99161 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.58439 * 246.16213 * 28 7 5 48 48 H 1.09000 * 109.58394 * 6.58125 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8194 2.9162 -0.0012 6 8 2.9609 3.7729 -0.0016 7 7 5.1209 3.2664 -0.0013 8 6 6.1722 2.2400 0.0053 9 6 7.1257 2.5119 1.1674 10 6 7.6484 3.9470 1.0705 11 6 6.4762 4.9262 1.1659 12 1 5.9500 4.7730 2.1082 13 7 6.9800 6.3006 1.1050 14 6 7.2459 6.9981 -0.0234 15 6 7.6875 8.2125 0.3792 16 6 8.1140 9.3558 -0.5052 17 7 6.9839 10.2663 -0.7054 18 6 7.1351 11.3852 -1.4803 19 1 8.0875 11.5966 -1.9436 20 6 6.0641 12.2476 -1.6704 21 7 4.9035 11.9902 -1.1054 22 14 6.2705 13.7742 -2.7269 23 1 5.9379 13.4488 -4.1371 24 1 5.3612 14.8415 -2.2375 25 1 7.6762 14.2459 -2.6460 26 7 7.6698 8.1988 1.7168 27 7 7.2401 7.0539 2.1157 28 6 5.5153 4.6817 -0.0013 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0278 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8340 0.9765 0.8892 35 1 3.8333 0.9767 -0.8908 36 1 5.7209 1.2554 0.1275 37 1 6.7248 2.2769 -0.9335 38 1 7.9634 1.8158 1.1228 39 1 6.5934 2.3815 2.1097 40 1 8.1591 4.0839 0.1173 41 1 8.3462 4.1352 1.8864 42 1 7.1293 6.6550 -1.0408 43 1 8.9351 9.8944 -0.0321 44 1 8.4423 8.9666 -1.4690 45 1 6.1284 10.0762 -0.2896 46 1 4.1553 12.5931 -1.2379 47 1 6.0131 4.9222 -0.9406 48 1 4.6307 5.3075 0.1165 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185855616.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:17 Heat of formation + Delta-G solvation = 10.653586 kcal Electronic energy + Delta-G solvation = -28951.788662 eV Core-core repulsion = 24850.778175 eV Total energy + Delta-G solvation = -4101.010487 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.35028 -41.45530 -39.27198 -38.34582 -36.86723 -35.70997 -33.80715 -33.42181 -32.52733 -31.67308 -31.35366 -28.91065 -27.69409 -26.29370 -25.26225 -24.73586 -23.68855 -23.10072 -22.34450 -21.75011 -20.13231 -19.37240 -18.71415 -18.21211 -17.61599 -17.45210 -17.35863 -16.66475 -16.59104 -16.15391 -16.02880 -15.67434 -15.52459 -15.35868 -15.16434 -14.77222 -14.51649 -14.38206 -14.01543 -13.86888 -13.79688 -13.70517 -13.24142 -13.08080 -12.79012 -12.70514 -12.56011 -12.41275 -12.32744 -12.20954 -12.14892 -12.09248 -11.97475 -11.87624 -11.83338 -11.07269 -10.96831 -10.90956 -10.66675 -10.25764 -9.91283 -9.03242 -7.93759 -5.24840 0.55618 1.07473 1.41852 1.42698 1.49882 1.51872 1.60704 1.72294 2.59057 2.82204 3.05581 3.33229 3.37329 3.46782 3.57372 3.65518 3.85964 3.90122 3.99608 4.09069 4.15741 4.17180 4.20918 4.26688 4.29812 4.33818 4.42087 4.46177 4.51809 4.55143 4.61093 4.73644 4.80203 4.85343 4.93699 4.97159 5.02863 5.11024 5.16251 5.21804 5.26564 5.28614 5.50223 5.63004 6.02805 6.25305 6.27308 6.99644 7.31673 7.47192 8.03302 8.28952 9.30318 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012457 B = 0.002309 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.194052 B =12121.186182 C =13838.817114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.052 3.948 3 O -0.410 6.410 4 C 0.051 3.949 5 C 0.507 3.493 6 O -0.578 6.578 7 N -0.602 5.602 8 C 0.093 3.907 9 C -0.123 4.123 10 C -0.124 4.124 11 C 0.132 3.868 12 H 0.106 0.894 13 N -0.278 5.278 14 C -0.021 4.021 15 C -0.034 4.034 16 C 0.235 3.765 17 N -0.741 5.741 18 C -0.242 4.242 19 H 0.088 0.912 20 C -0.082 4.082 21 N -0.975 5.975 22 Si 0.982 3.018 23 H -0.282 1.282 24 H -0.300 1.300 25 H -0.265 1.265 26 N -0.297 5.297 27 N -0.113 5.113 28 C 0.108 3.892 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.101 0.899 38 H 0.124 0.876 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.224 0.776 43 H 0.031 0.969 44 H 0.066 0.934 45 H 0.369 0.631 46 H 0.250 0.750 47 H 0.102 0.898 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.617 -37.819 0.554 37.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.024 4.024 3 O -0.330 6.330 4 C -0.028 4.028 5 C 0.296 3.704 6 O -0.456 6.456 7 N -0.337 5.337 8 C -0.027 4.027 9 C -0.161 4.161 10 C -0.162 4.162 11 C 0.031 3.969 12 H 0.124 0.876 13 N -0.072 5.072 14 C -0.172 4.172 15 C -0.173 4.173 16 C 0.108 3.892 17 N -0.383 5.383 18 C -0.373 4.373 19 H 0.105 0.895 20 C -0.274 4.274 21 N -0.626 5.626 22 Si 0.810 3.190 23 H -0.209 1.209 24 H -0.227 1.227 25 H -0.189 1.189 26 N -0.163 5.163 27 N -0.091 5.091 28 C -0.017 4.017 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.119 0.881 38 H 0.142 0.858 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.093 0.907 42 H 0.241 0.759 43 H 0.049 0.951 44 H 0.083 0.917 45 H 0.200 0.800 46 H 0.058 0.942 47 H 0.120 0.880 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.162 -37.045 2.017 37.235 hybrid contribution -0.675 1.271 -1.052 1.783 sum 2.487 -35.774 0.965 35.874 Atomic orbital electron populations 1.21808 0.93944 1.03439 1.02157 1.22767 0.95765 0.81760 1.02104 1.88011 1.20079 1.29064 1.95833 1.22407 0.83403 0.91225 1.05766 1.21228 0.81815 0.92273 0.75090 1.90776 1.50730 1.53794 1.50343 1.48028 1.05953 1.06205 1.73496 1.22281 0.88503 0.91189 1.00740 1.21876 1.00749 0.94339 0.99162 1.22003 0.95005 0.94425 1.04816 1.22247 0.97497 0.75128 1.02063 0.87612 1.47579 1.41743 1.13526 1.04344 1.23712 1.05473 0.92852 0.95206 1.22322 1.06497 0.97256 0.91218 1.18997 0.90004 0.85913 0.94308 1.42545 1.10175 1.25790 1.59816 1.19726 0.96928 0.99416 1.21267 0.89463 1.25717 0.95656 1.02923 1.03107 1.69885 1.02437 1.40024 1.50283 0.85011 0.77504 0.78449 0.77998 1.20928 1.22685 1.18949 1.75029 1.16809 1.11989 1.12489 1.78174 1.18223 0.98089 1.14612 1.21645 0.98098 0.84086 0.97845 0.93128 0.93081 0.88434 0.91041 0.91088 0.86552 0.86474 0.85835 0.88117 0.85827 0.90770 0.88997 0.90682 0.75945 0.95093 0.91672 0.80027 0.94152 0.87957 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 10.28 71.98 0.74 -0.97 16 2 C 0.05 0.50 6.66 71.98 0.48 0.98 16 3 O -0.41 -7.65 9.88 -129.94 -1.28 -8.93 16 4 C 0.05 0.54 4.77 71.24 0.34 0.87 16 5 C 0.51 10.12 7.78 87.66 0.68 10.80 16 6 O -0.58 -19.61 15.91 16.00 0.25 -19.36 16 7 N -0.60 -8.06 2.98 -819.82 -2.44 -10.50 16 8 C 0.09 0.19 6.31 86.22 0.54 0.74 16 9 C -0.12 -0.30 6.06 30.53 0.19 -0.12 16 10 C -0.12 -1.24 5.49 30.62 0.17 -1.07 16 11 C 0.13 2.48 3.27 45.05 0.15 2.63 16 12 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 13 N -0.28 -7.91 3.26 -326.88 -1.06 -8.98 16 14 C -0.02 -0.62 10.61 83.49 0.89 0.27 16 15 C -0.03 -1.35 6.62 41.59 0.28 -1.07 16 16 C 0.24 10.12 6.82 85.63 0.58 10.70 16 17 N -0.74 -40.46 5.59 -347.16 -1.94 -42.40 16 18 C -0.24 -13.99 9.99 84.03 0.84 -13.15 16 19 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 20 C -0.08 -4.95 5.50 84.86 0.47 -4.48 16 21 N -0.98 -63.55 13.06 21.65 0.28 -63.27 16 22 Si 0.98 47.74 29.55 68.60 2.03 49.77 16 23 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 24 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 25 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 26 N -0.30 -12.80 12.41 -48.60 -0.60 -13.41 16 27 N -0.11 -4.20 13.16 37.02 0.49 -3.71 16 28 C 0.11 2.05 5.47 86.35 0.47 2.52 16 29 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.12 0.37 7.68 -2.38 -0.02 0.35 16 35 H 0.12 0.37 7.95 -2.39 -0.02 0.35 16 36 H 0.12 -0.50 5.93 -2.39 -0.01 -0.51 16 37 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 38 H 0.12 -0.34 8.14 -2.38 -0.02 -0.36 16 39 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.22 4.75 7.18 -2.91 -0.02 4.73 16 43 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 44 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.37 22.30 7.66 -92.71 -0.71 21.59 16 46 H 0.25 15.75 8.31 -92.71 -0.77 14.98 16 47 H 0.10 1.57 6.92 -2.39 -0.02 1.55 16 48 H 0.07 1.89 7.00 -2.39 -0.02 1.87 16 Total: -1.00 -93.44 395.06 2.78 -90.65 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.26 Total: 21.49 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 6.81 Total: 8.65 kcal Atomic # 7 Polarization: -136.99 SS G_CDS: -5.28 Total: -142.28 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -1.03 Total: -28.29 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Total: -93.44 2.78 -90.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185855616.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.307 kcal (2) G-P(sol) polarization free energy of solvation -93.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds