Wall clock time and date at job start Tue Mar 31 2020 21:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00058 * 2 1 4 4 C 1.53001 * 109.47217 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47497 * 180.02562 * 4 3 2 6 6 O 1.21288 * 119.99508 * 359.97438 * 5 4 3 7 7 N 1.34775 * 120.00217 * 180.02562 * 5 4 3 8 8 C 1.46928 * 120.62932 * 359.97291 * 7 5 4 9 9 C 1.53187 * 108.77625 * 126.41524 * 8 7 5 10 10 C 1.53046 * 109.31363 * 54.63376 * 9 8 7 11 11 C 1.53046 * 109.53579 * 298.63645 * 10 9 8 12 12 H 1.08995 * 109.49499 * 301.40973 * 11 10 9 13 13 N 1.46498 * 109.49451 * 181.31303 * 11 10 9 14 14 C 1.35314 * 125.87152 * 274.71645 * 13 11 10 15 15 C 1.35351 * 106.17564 * 179.90769 * 14 13 11 16 16 C 1.50702 * 126.74829 * 180.12261 * 15 14 13 17 17 N 1.46504 * 109.46995 * 95.24566 * 16 15 14 18 18 C 1.36933 * 120.00045 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99791 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99953 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00387 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 120.00148 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46800 * 89.99814 * 22 20 18 24 24 H 1.48497 * 109.47393 * 210.00147 * 22 20 18 25 25 H 1.48505 * 109.46559 * 329.99915 * 22 20 18 26 26 N 1.33772 * 106.49573 * 0.34776 * 15 14 13 27 27 N 1.28629 * 108.88650 * 359.77900 * 26 15 14 28 28 C 1.46921 * 120.63131 * 179.97438 * 7 5 4 29 29 H 1.08997 * 109.47691 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47151 * 300.00202 * 1 2 3 31 31 H 1.09004 * 109.47092 * 59.99465 * 1 2 3 32 32 H 1.09003 * 109.47499 * 60.00014 * 3 2 1 33 33 H 1.08995 * 109.47314 * 300.00185 * 3 2 1 34 34 H 1.09001 * 109.47130 * 60.00052 * 4 3 2 35 35 H 1.09003 * 109.47096 * 300.00131 * 4 3 2 36 36 H 1.09000 * 109.58351 * 246.20638 * 8 7 5 37 37 H 1.09002 * 109.58642 * 6.48295 * 8 7 5 38 38 H 1.09001 * 109.49833 * 294.68424 * 9 8 7 39 39 H 1.08996 * 109.49835 * 174.58430 * 9 8 7 40 40 H 1.08993 * 109.46296 * 178.61734 * 10 9 8 41 41 H 1.09000 * 109.45696 * 58.65290 * 10 9 8 42 42 H 1.08002 * 126.90793 * 0.02562 * 14 13 11 43 43 H 1.09001 * 109.47001 * 215.23959 * 16 15 14 44 44 H 1.08992 * 109.47299 * 335.24664 * 16 15 14 45 45 H 0.97000 * 120.00176 * 359.97438 * 17 16 15 46 46 H 0.96999 * 120.00738 * 180.02562 * 21 20 18 47 47 H 1.08996 * 109.58905 * 113.79723 * 28 7 5 48 48 H 1.09001 * 109.70481 * 353.44076 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1485 2.5613 0.0013 6 8 3.4356 3.5425 0.0008 7 7 5.4889 2.7021 0.0014 8 6 6.3655 1.5230 0.0015 9 6 7.3507 1.6409 -1.1656 10 6 8.0928 2.9759 -1.0686 11 6 7.0894 4.1275 -1.1652 12 1 6.5465 4.0587 -2.1078 13 7 7.8039 5.4049 -1.1037 14 6 8.1685 6.0560 0.0251 15 6 8.8010 7.1830 -0.3772 16 6 9.3997 8.2458 0.5078 17 7 10.8290 7.9811 0.6902 18 6 11.5877 8.8205 1.4615 19 1 11.1324 9.6774 1.9356 20 6 12.9421 8.5700 1.6340 21 7 13.4972 7.5260 1.0558 22 14 13.9771 9.7146 2.6867 23 1 13.9638 9.2403 4.0938 24 1 15.3733 9.7252 2.1810 25 1 13.4168 11.0884 2.6220 26 7 8.7858 7.1702 -1.7148 27 7 8.1879 6.1037 -2.1142 28 6 6.1012 4.0376 0.0014 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6886 1.8463 -0.8899 34 1 3.8575 0.6435 -0.8891 35 1 3.8568 0.6438 0.8909 36 1 6.9159 1.4770 0.9412 37 1 5.7646 0.6210 -0.1145 38 1 6.8052 1.5956 -2.1082 39 1 8.0682 0.8217 -1.1202 40 1 8.8121 3.0517 -1.8840 41 1 8.6180 3.0309 -0.1150 42 1 7.9920 5.7391 1.0424 43 1 9.2676 9.2227 0.0426 44 1 8.9015 8.2345 1.4771 45 1 11.2379 7.2113 0.2648 46 1 14.4435 7.3507 1.1766 47 1 6.6301 4.1971 0.9411 48 1 5.3277 4.7966 -0.1158 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185856590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:27 Heat of formation + Delta-G solvation = 35.661193 kcal Electronic energy + Delta-G solvation = -28827.229996 eV Core-core repulsion = 24727.303920 eV Total energy + Delta-G solvation = -4099.926076 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.03436 -40.82714 -38.57379 -37.89574 -35.25815 -34.44868 -32.80443 -32.49529 -31.85192 -30.15185 -29.89825 -27.30948 -26.19545 -25.80308 -24.72326 -23.56392 -22.80202 -22.27363 -20.94091 -20.58085 -19.37104 -18.15911 -17.44273 -16.99355 -16.79100 -16.65072 -16.17218 -16.03674 -15.60020 -15.25310 -15.09035 -14.71485 -14.65795 -14.35563 -14.04895 -13.82199 -13.64969 -13.40658 -13.19591 -13.09375 -12.64660 -12.48611 -12.31168 -12.00730 -11.84482 -11.79555 -11.57043 -11.53973 -11.44025 -11.21240 -10.88726 -10.79333 -10.51559 -10.33672 -10.18838 -10.07876 -9.88028 -9.70866 -9.28911 -8.87324 -8.82039 -6.90029 -5.72598 -3.02017 1.81675 1.94900 2.08058 2.59912 2.93145 3.24594 3.46560 3.51850 3.54001 3.90445 3.98754 4.15857 4.24847 4.31110 4.45789 4.48918 4.53009 4.63722 4.72765 4.78924 4.86249 4.87284 4.89188 4.99782 5.09465 5.15197 5.16905 5.19299 5.23677 5.26856 5.29833 5.36084 5.49463 5.53920 5.65021 5.69610 5.77189 5.88455 6.19408 6.42379 6.59031 6.68073 6.72088 6.77512 6.81794 7.56038 7.72782 8.44647 8.85775 9.56549 10.12381 10.48553 11.50166 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022194 B = 0.001918 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.308797 B =14592.518613 C =14635.976984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.396 6.396 3 C 0.074 3.926 4 C -0.138 4.138 5 C 0.523 3.477 6 O -0.535 6.535 7 N -0.608 5.608 8 C 0.099 3.901 9 C -0.130 4.130 10 C -0.134 4.134 11 C 0.138 3.862 12 H 0.113 0.887 13 N -0.294 5.294 14 C -0.046 4.046 15 C -0.002 4.002 16 C 0.232 3.768 17 N -0.725 5.725 18 C -0.239 4.239 19 H 0.073 0.927 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.281 1.281 26 N -0.253 5.253 27 N -0.094 5.094 28 C 0.104 3.896 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.187 0.813 43 H 0.039 0.961 44 H 0.038 0.962 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.085 0.915 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.883 -21.200 -1.883 31.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.003 4.003 4 C -0.178 4.178 5 C 0.312 3.688 6 O -0.411 6.411 7 N -0.343 5.343 8 C -0.023 4.023 9 C -0.169 4.169 10 C -0.173 4.173 11 C 0.034 3.966 12 H 0.131 0.869 13 N -0.088 5.088 14 C -0.196 4.196 15 C -0.140 4.140 16 C 0.103 3.897 17 N -0.370 5.370 18 C -0.370 4.370 19 H 0.091 0.909 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.740 3.260 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.207 1.207 26 N -0.120 5.120 27 N -0.072 5.072 28 C -0.020 4.020 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.204 0.796 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.219 0.781 46 H 0.064 0.936 47 H 0.103 0.897 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -24.082 -20.600 -3.330 31.865 hybrid contribution 0.689 0.287 1.549 1.719 sum -23.393 -20.312 -1.782 31.032 Atomic orbital electron populations 1.22751 0.80340 1.02877 1.00345 1.87789 1.20273 1.27820 1.95599 1.22172 0.91680 0.84416 1.01983 1.21502 0.95637 0.94772 1.05860 1.20472 0.81483 0.91389 0.75492 1.90754 1.60264 1.40836 1.49248 1.47963 1.05618 1.06721 1.73994 1.21976 0.92940 0.87716 0.99715 1.21905 0.98590 0.97418 0.98961 1.21995 0.97742 0.92655 1.04865 1.21827 0.93028 0.79657 1.02058 0.86858 1.47221 1.38959 1.17368 1.05277 1.23320 1.06429 0.96180 0.93692 1.22463 1.01828 0.98188 0.91539 1.18955 0.86158 0.91782 0.92811 1.42299 1.02288 1.32361 1.60078 1.19242 0.90605 1.05187 1.21984 0.90876 1.24750 0.96799 0.98359 1.01014 1.69679 1.11543 1.28968 1.47897 0.86157 0.79825 0.80204 0.79801 1.21772 1.21807 1.20662 1.75100 1.14028 1.11541 1.11336 1.78281 1.14444 1.01027 1.13466 1.21814 0.96755 0.85867 0.97517 0.89414 0.93834 0.93852 0.92248 0.92270 0.87659 0.87652 0.90195 0.88672 0.90689 0.89036 0.89749 0.90040 0.79634 0.94288 0.94455 0.78123 0.93557 0.89662 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.40 -2.96 10.70 -35.23 -0.38 -3.33 16 3 C 0.07 0.53 5.23 37.16 0.19 0.72 16 4 C -0.14 -0.76 4.42 -27.88 -0.12 -0.88 16 5 C 0.52 4.35 7.70 -10.99 -0.08 4.26 16 6 O -0.53 -6.59 15.40 5.55 0.09 -6.50 16 7 N -0.61 -4.21 2.97 -172.80 -0.51 -4.73 16 8 C 0.10 0.40 6.34 -3.71 -0.02 0.37 16 9 C -0.13 -0.59 6.08 -26.61 -0.16 -0.75 16 10 C -0.13 -1.06 5.49 -26.68 -0.15 -1.20 16 11 C 0.14 1.34 3.28 -67.83 -0.22 1.12 16 12 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 13 N -0.29 -4.19 3.26 -54.66 -0.18 -4.36 16 14 C -0.05 -0.70 10.60 -17.05 -0.18 -0.88 16 15 C 0.00 -0.05 6.62 -82.78 -0.55 -0.59 16 16 C 0.23 4.95 6.82 -5.19 -0.04 4.92 16 17 N -0.73 -19.11 5.59 -61.09 -0.34 -19.45 16 18 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 19 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -28.73 13.06 55.49 0.72 -28.01 16 22 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 N -0.25 -5.26 12.41 33.29 0.41 -4.85 16 27 N -0.09 -1.70 13.16 60.35 0.79 -0.90 16 28 C 0.10 0.90 5.45 -3.73 -0.02 0.88 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 33 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 34 H 0.11 0.42 7.69 -51.93 -0.40 0.02 16 35 H 0.11 0.42 7.94 -51.93 -0.41 0.01 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.10 0.18 5.93 -51.93 -0.31 -0.12 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.19 2.20 7.17 -52.49 -0.38 1.83 16 43 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.39 10.92 7.66 -40.82 -0.31 10.60 16 46 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 47 H 0.09 0.67 6.91 -51.93 -0.36 0.31 16 48 H 0.11 1.13 7.01 -51.93 -0.36 0.77 16 LS Contribution 394.17 15.07 5.94 5.94 Total: -1.00 -36.92 394.17 -6.53 -43.45 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -7.57 Total: 3.35 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -0.49 Total: 1.82 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: 0.90 Total: -62.30 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.29 Total: -9.83 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.92 -6.53 -43.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185856590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.116 kcal (2) G-P(sol) polarization free energy of solvation -36.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds