Wall clock time and date at job start Tue Mar 31 2020 21:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00058 * 2 1 4 4 C 1.53001 * 109.47217 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47497 * 180.02562 * 4 3 2 6 6 O 1.21288 * 119.99508 * 359.97438 * 5 4 3 7 7 N 1.34775 * 120.00217 * 180.02562 * 5 4 3 8 8 C 1.46928 * 120.62932 * 359.97291 * 7 5 4 9 9 C 1.53187 * 108.77625 * 126.41524 * 8 7 5 10 10 C 1.53046 * 109.31363 * 54.63376 * 9 8 7 11 11 C 1.53046 * 109.53579 * 298.63645 * 10 9 8 12 12 H 1.08995 * 109.49499 * 301.40973 * 11 10 9 13 13 N 1.46498 * 109.49451 * 181.31303 * 11 10 9 14 14 C 1.35314 * 125.87152 * 274.71645 * 13 11 10 15 15 C 1.35351 * 106.17564 * 179.90769 * 14 13 11 16 16 C 1.50702 * 126.74829 * 180.12261 * 15 14 13 17 17 N 1.46504 * 109.46995 * 95.24566 * 16 15 14 18 18 C 1.36933 * 120.00045 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99791 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99953 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00387 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 120.00148 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46800 * 89.99814 * 22 20 18 24 24 H 1.48497 * 109.47393 * 210.00147 * 22 20 18 25 25 H 1.48505 * 109.46559 * 329.99915 * 22 20 18 26 26 N 1.33772 * 106.49573 * 0.34776 * 15 14 13 27 27 N 1.28629 * 108.88650 * 359.77900 * 26 15 14 28 28 C 1.46921 * 120.63131 * 179.97438 * 7 5 4 29 29 H 1.08997 * 109.47691 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47151 * 300.00202 * 1 2 3 31 31 H 1.09004 * 109.47092 * 59.99465 * 1 2 3 32 32 H 1.09003 * 109.47499 * 60.00014 * 3 2 1 33 33 H 1.08995 * 109.47314 * 300.00185 * 3 2 1 34 34 H 1.09001 * 109.47130 * 60.00052 * 4 3 2 35 35 H 1.09003 * 109.47096 * 300.00131 * 4 3 2 36 36 H 1.09000 * 109.58351 * 246.20638 * 8 7 5 37 37 H 1.09002 * 109.58642 * 6.48295 * 8 7 5 38 38 H 1.09001 * 109.49833 * 294.68424 * 9 8 7 39 39 H 1.08996 * 109.49835 * 174.58430 * 9 8 7 40 40 H 1.08993 * 109.46296 * 178.61734 * 10 9 8 41 41 H 1.09000 * 109.45696 * 58.65290 * 10 9 8 42 42 H 1.08002 * 126.90793 * 0.02562 * 14 13 11 43 43 H 1.09001 * 109.47001 * 215.23959 * 16 15 14 44 44 H 1.08992 * 109.47299 * 335.24664 * 16 15 14 45 45 H 0.97000 * 120.00176 * 359.97438 * 17 16 15 46 46 H 0.96999 * 120.00738 * 180.02562 * 21 20 18 47 47 H 1.08996 * 109.58905 * 113.79723 * 28 7 5 48 48 H 1.09001 * 109.70481 * 353.44076 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1485 2.5613 0.0013 6 8 3.4356 3.5425 0.0008 7 7 5.4889 2.7021 0.0014 8 6 6.3655 1.5230 0.0015 9 6 7.3507 1.6409 -1.1656 10 6 8.0928 2.9759 -1.0686 11 6 7.0894 4.1275 -1.1652 12 1 6.5465 4.0587 -2.1078 13 7 7.8039 5.4049 -1.1037 14 6 8.1685 6.0560 0.0251 15 6 8.8010 7.1830 -0.3772 16 6 9.3997 8.2458 0.5078 17 7 10.8290 7.9811 0.6902 18 6 11.5877 8.8205 1.4615 19 1 11.1324 9.6774 1.9356 20 6 12.9421 8.5700 1.6340 21 7 13.4972 7.5260 1.0558 22 14 13.9771 9.7146 2.6867 23 1 13.9638 9.2403 4.0938 24 1 15.3733 9.7252 2.1810 25 1 13.4168 11.0884 2.6220 26 7 8.7858 7.1702 -1.7148 27 7 8.1879 6.1037 -2.1142 28 6 6.1012 4.0376 0.0014 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6886 1.8463 -0.8899 34 1 3.8575 0.6435 -0.8891 35 1 3.8568 0.6438 0.8909 36 1 6.9159 1.4770 0.9412 37 1 5.7646 0.6210 -0.1145 38 1 6.8052 1.5956 -2.1082 39 1 8.0682 0.8217 -1.1202 40 1 8.8121 3.0517 -1.8840 41 1 8.6180 3.0309 -0.1150 42 1 7.9920 5.7391 1.0424 43 1 9.2676 9.2227 0.0426 44 1 8.9015 8.2345 1.4771 45 1 11.2379 7.2113 0.2648 46 1 14.4435 7.3507 1.1766 47 1 6.6301 4.1971 0.9411 48 1 5.3277 4.7966 -0.1158 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185856590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:26 Heat of formation + Delta-G solvation = 8.067731 kcal Electronic energy + Delta-G solvation = -28828.426538 eV Core-core repulsion = 24727.303920 eV Total energy + Delta-G solvation = -4101.122618 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.34723 -41.46278 -39.18100 -38.51920 -36.86069 -35.69636 -33.82072 -33.41554 -32.97688 -31.64626 -31.00705 -27.88784 -27.60463 -26.62410 -25.55821 -24.79557 -24.13023 -23.07872 -22.26070 -21.61061 -19.96219 -19.36968 -18.77230 -18.06309 -17.47954 -17.35048 -17.14906 -16.68426 -16.59197 -16.20752 -16.04805 -15.72601 -15.58920 -15.51629 -15.26566 -14.94337 -14.56311 -14.39933 -14.35140 -13.90094 -13.78558 -13.72213 -13.08098 -12.89521 -12.76936 -12.70590 -12.55229 -12.42768 -12.33933 -12.23547 -12.10058 -12.08731 -11.97970 -11.87092 -11.81675 -11.09462 -10.99435 -10.95223 -10.68736 -10.25405 -9.89165 -9.01726 -7.92762 -5.23238 0.56398 1.09965 1.43315 1.46240 1.51403 1.52917 1.61739 1.83335 2.59957 2.78438 3.07759 3.35623 3.37994 3.47147 3.60998 3.66516 3.87200 3.88895 4.00335 4.00679 4.02993 4.16262 4.22206 4.29389 4.39290 4.43454 4.49664 4.50883 4.51452 4.55783 4.62160 4.72362 4.79723 4.81225 4.85368 4.86313 4.95028 4.97109 5.11065 5.15778 5.21441 5.28481 5.51607 5.63670 6.11356 6.19142 6.26692 6.96363 7.33778 7.47474 8.04374 8.31066 9.31043 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022194 B = 0.001918 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.308797 B =14592.518613 C =14635.976984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.074 3.926 4 C -0.129 4.129 5 C 0.521 3.479 6 O -0.583 6.583 7 N -0.603 5.603 8 C 0.095 3.905 9 C -0.121 4.121 10 C -0.130 4.130 11 C 0.134 3.866 12 H 0.113 0.887 13 N -0.278 5.278 14 C -0.021 4.021 15 C -0.034 4.034 16 C 0.235 3.765 17 N -0.738 5.738 18 C -0.245 4.245 19 H 0.084 0.916 20 C -0.076 4.076 21 N -0.972 5.972 22 Si 0.979 3.021 23 H -0.282 1.282 24 H -0.298 1.298 25 H -0.269 1.269 26 N -0.297 5.297 27 N -0.112 5.112 28 C 0.110 3.890 29 H 0.103 0.897 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.094 0.906 37 H 0.125 0.875 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.224 0.776 43 H 0.028 0.972 44 H 0.063 0.937 45 H 0.371 0.629 46 H 0.251 0.749 47 H 0.098 0.902 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.690 -23.388 -0.459 34.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C -0.003 4.003 4 C -0.168 4.168 5 C 0.311 3.689 6 O -0.463 6.463 7 N -0.336 5.336 8 C -0.025 4.025 9 C -0.160 4.160 10 C -0.169 4.169 11 C 0.032 3.968 12 H 0.131 0.869 13 N -0.072 5.072 14 C -0.172 4.172 15 C -0.173 4.173 16 C 0.107 3.893 17 N -0.381 5.381 18 C -0.377 4.377 19 H 0.102 0.898 20 C -0.268 4.268 21 N -0.622 5.622 22 Si 0.808 3.192 23 H -0.209 1.209 24 H -0.225 1.225 25 H -0.194 1.194 26 N -0.163 5.163 27 N -0.090 5.090 28 C -0.015 4.015 29 H 0.121 0.879 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.112 0.888 37 H 0.143 0.857 38 H 0.097 0.903 39 H 0.132 0.868 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.240 0.760 43 H 0.046 0.954 44 H 0.081 0.919 45 H 0.202 0.798 46 H 0.059 0.941 47 H 0.116 0.884 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -24.929 -22.810 -1.922 33.844 hybrid contribution 0.803 0.889 1.065 1.603 sum -24.126 -21.922 -0.857 32.609 Atomic orbital electron populations 1.22932 0.79356 1.04056 1.00691 1.87759 1.21470 1.27778 1.95621 1.22133 0.92967 0.84255 1.00952 1.21498 0.94186 0.93130 1.08000 1.20997 0.81561 0.91918 0.74428 1.90741 1.61439 1.42563 1.51559 1.48046 1.05627 1.06820 1.73088 1.22278 0.92847 0.87362 1.00061 1.21911 0.98863 0.95707 0.99515 1.22015 0.97183 0.93610 1.04115 1.22235 0.93593 0.78221 1.02777 0.86921 1.47582 1.37385 1.17907 1.04310 1.23712 1.03854 0.94440 0.95218 1.22303 1.04134 0.99618 0.91222 1.18972 0.83930 0.92088 0.94271 1.42485 1.04261 1.31614 1.59697 1.19702 0.91167 1.05379 1.21418 0.89830 1.25626 0.98154 1.00148 1.02869 1.69850 1.11482 1.31010 1.49875 0.85058 0.77428 0.78646 0.78098 1.20896 1.22504 1.19377 1.75026 1.15696 1.13172 1.12455 1.78173 1.15190 1.01072 1.14606 1.21654 0.95798 0.86715 0.97315 0.87855 0.93499 0.93566 0.93338 0.93455 0.85367 0.85325 0.88814 0.85692 0.90316 0.86837 0.91542 0.90035 0.75951 0.95377 0.91900 0.79776 0.94068 0.88373 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.41 -5.39 10.70 -148.98 -1.59 -6.98 16 3 C 0.07 0.97 5.23 71.98 0.38 1.34 16 4 C -0.13 -1.06 4.42 29.85 0.13 -0.93 16 5 C 0.52 7.73 7.70 87.66 0.67 8.41 16 6 O -0.58 -14.29 15.40 -3.06 -0.05 -14.34 16 7 N -0.60 -6.81 2.97 -819.00 -2.43 -9.24 16 8 C 0.10 0.37 6.34 86.36 0.55 0.92 16 9 C -0.12 -0.69 6.08 30.67 0.19 -0.50 16 10 C -0.13 -1.81 5.49 30.63 0.17 -1.64 16 11 C 0.13 2.43 3.28 45.06 0.15 2.58 16 12 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 13 N -0.28 -7.77 3.26 -326.86 -1.07 -8.84 16 14 C -0.02 -0.60 10.60 83.49 0.89 0.28 16 15 C -0.03 -1.33 6.62 41.60 0.28 -1.05 16 16 C 0.24 10.07 6.82 85.63 0.58 10.66 16 17 N -0.74 -39.27 5.59 -347.18 -1.94 -41.22 16 18 C -0.25 -13.92 9.99 84.03 0.84 -13.08 16 19 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 20 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 21 N -0.97 -60.77 13.06 21.65 0.28 -60.48 16 22 Si 0.98 46.51 29.55 68.60 2.03 48.53 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 N -0.30 -12.71 12.41 -48.60 -0.60 -13.31 16 27 N -0.11 -4.13 13.16 37.02 0.49 -3.64 16 28 C 0.11 1.72 5.45 86.35 0.47 2.19 16 29 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.37 8.14 -2.39 -0.02 0.36 16 31 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.05 0.72 8.10 -2.39 -0.02 0.70 16 33 H 0.05 0.71 8.10 -2.39 -0.02 0.69 16 34 H 0.13 0.51 7.69 -2.39 -0.02 0.49 16 35 H 0.13 0.51 7.94 -2.39 -0.02 0.49 16 36 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.13 -0.18 5.93 -2.39 -0.01 -0.19 16 38 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.22 4.66 7.17 -2.91 -0.02 4.64 16 43 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.37 21.53 7.66 -92.71 -0.71 20.82 16 46 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 47 H 0.10 1.29 6.91 -2.39 -0.02 1.27 16 48 H 0.08 1.76 7.01 -2.39 -0.02 1.74 16 Total: -1.00 -82.93 394.17 2.37 -80.56 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.26 Total: 22.27 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 7.00 Total: 6.69 kcal Atomic # 7 Polarization: -131.45 SS G_CDS: -5.27 Total: -136.73 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -1.64 Total: -21.32 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.53 kcal Total: -82.93 2.37 -80.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185856590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.627 kcal (2) G-P(sol) polarization free energy of solvation -82.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds